Wall clock time and date at job start Mon Mar 30 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34634 * 116.99742 * 2 1 4 4 O 1.21509 * 120.00322 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00219 * 179.97438 * 3 2 1 6 6 C 1.47431 * 125.64640 * 354.87220 * 5 3 2 7 7 C 1.54912 * 104.83274 * 155.89077 * 6 5 3 8 8 C 1.55160 * 101.58189 * 37.00875 * 7 6 5 9 9 H 1.08999 * 110.72108 * 82.85906 * 8 7 6 10 10 C 1.50696 * 110.87060 * 206.06772 * 8 7 6 11 11 H 1.07993 * 120.00330 * 118.54784 * 10 8 7 12 12 C 1.37879 * 119.99566 * 298.54287 * 10 8 7 13 13 N 1.31515 * 119.99947 * 180.02562 * 12 10 8 14 14 Si 1.86801 * 120.00248 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47488 * 89.99660 * 14 12 10 16 16 H 1.48498 * 109.47025 * 209.99834 * 14 12 10 17 17 H 1.48501 * 109.46716 * 329.99466 * 14 12 10 18 18 C 1.47021 * 125.65077 * 174.89336 * 5 3 2 19 19 H 1.08994 * 109.88530 * 61.46499 * 18 5 3 20 20 C 1.53007 * 109.88113 * 300.45476 * 18 5 3 21 21 C 1.52995 * 109.46936 * 298.54022 * 20 18 5 22 22 C 1.53002 * 109.47147 * 68.46569 * 21 20 18 23 23 C 1.53003 * 109.46829 * 188.46272 * 21 20 18 24 24 H 1.09004 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46904 * 299.99326 * 1 2 3 26 26 H 1.09000 * 109.47413 * 59.99922 * 1 2 3 27 27 H 1.09007 * 110.36061 * 274.72878 * 6 5 3 28 28 H 1.09001 * 110.36767 * 37.04956 * 6 5 3 29 29 H 1.08992 * 110.99943 * 155.08316 * 7 6 5 30 30 H 1.09000 * 110.99840 * 278.93357 * 7 6 5 31 31 H 0.97000 * 120.00481 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.46766 * 58.53907 * 20 18 5 33 33 H 1.09001 * 109.47152 * 178.54032 * 20 18 5 34 34 H 1.08997 * 109.47715 * 308.46251 * 21 20 18 35 35 H 1.09000 * 109.46908 * 171.06456 * 22 21 20 36 36 H 1.08997 * 109.47066 * 291.06764 * 22 21 20 37 37 H 1.09004 * 109.46940 * 51.06770 * 22 21 20 38 38 H 1.09002 * 109.46938 * 60.00249 * 23 21 20 39 39 H 1.09001 * 109.47114 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.47250 * 300.00008 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.3296 0.1237 0.1082 7 6 5.6480 0.6111 -0.5430 8 6 5.6904 2.0940 -0.0884 9 1 6.1016 2.1774 0.9176 10 6 6.4848 2.9303 -1.0582 11 1 6.0090 3.7438 -1.5855 12 6 7.8192 2.6569 -1.2720 13 7 8.5127 3.3870 -2.1179 14 14 8.6420 1.2493 -0.3603 15 1 8.5146 0.0022 -1.1562 16 1 10.0794 1.5633 -0.1588 17 1 7.9862 1.0637 0.9591 18 6 4.2025 2.5035 -0.1057 19 1 3.9858 3.1576 0.7387 20 6 3.8756 3.2211 -1.4169 21 6 4.2408 2.3186 -2.5971 22 6 3.2928 1.1182 -2.6336 23 6 4.1140 3.1083 -3.9014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 4.4954 -0.1326 1.1547 28 1 3.9326 -0.7339 -0.4350 29 1 6.5033 0.0586 -0.1541 30 1 5.5979 0.5367 -1.6293 31 1 9.4514 3.1944 -2.2687 32 1 2.8103 3.4496 -1.4502 33 1 4.4478 4.1469 -1.4769 34 1 5.2665 1.9681 -2.4828 35 1 3.4470 0.5614 -3.5578 36 1 3.4944 0.4699 -1.7808 37 1 2.2615 1.4682 -2.5880 38 1 4.7894 3.9635 -3.8754 39 1 4.3746 2.4654 -4.7422 40 1 3.0883 3.4587 -4.0158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257732653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:04 Heat of formation + Delta-G solvation = -60.126477 kcal Electronic energy + Delta-G solvation = -21241.149928 eV Core-core repulsion = 18250.065109 eV Total energy + Delta-G solvation = -2991.084819 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62310 -38.69755 -35.81887 -34.41580 -33.06213 -31.03942 -29.95547 -27.56453 -26.37024 -25.76899 -23.87929 -22.42488 -20.61774 -19.81240 -18.60478 -17.38525 -17.20251 -16.48192 -16.14257 -15.02459 -14.60403 -14.27808 -13.82470 -13.25915 -13.09501 -12.98660 -12.78625 -12.45391 -12.37997 -11.85806 -11.74491 -11.55893 -11.53306 -11.07190 -10.92994 -10.60910 -10.51487 -10.32840 -10.15805 -9.97869 -9.91817 -9.86788 -9.53807 -9.28387 -8.84865 -8.59121 -8.04704 -6.13339 -4.11530 2.51419 3.21866 3.22872 3.31585 3.33970 4.33312 4.36651 5.11994 5.22409 5.29049 5.33974 5.43445 5.55629 5.65638 5.72811 5.83814 5.85151 5.93057 6.11114 6.23960 6.29566 6.32536 6.48531 6.49745 6.56051 6.59690 6.68751 6.70897 6.74183 6.84441 7.01894 7.05494 7.18236 7.34696 7.58838 7.67565 7.98264 8.43448 8.68766 8.91638 9.46109 10.97443 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026727 B = 0.008502 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.397094 B = 3292.360804 C = 3819.627263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.376 6.376 3 C 0.662 3.338 4 O -0.577 6.577 5 N -0.589 5.589 6 C 0.101 3.899 7 C -0.150 4.150 8 C 0.013 3.987 9 H 0.042 0.958 10 C -0.511 4.511 11 H 0.096 0.904 12 C 0.076 3.924 13 N -0.893 5.893 14 Si 0.872 3.128 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.265 1.265 18 C 0.167 3.833 19 H 0.063 0.937 20 C -0.107 4.107 21 C -0.105 4.105 22 C -0.160 4.160 23 C -0.137 4.137 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 -7.596 2.459 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.290 6.290 3 C 0.417 3.583 4 O -0.467 6.467 5 N -0.329 5.329 6 C -0.021 4.021 7 C -0.188 4.188 8 C -0.006 4.006 9 H 0.060 0.940 10 C -0.549 4.549 11 H 0.114 0.886 12 C -0.127 4.127 13 N -0.530 5.530 14 Si 0.701 3.299 15 H -0.203 1.203 16 H -0.222 1.222 17 H -0.190 1.190 18 C 0.067 3.933 19 H 0.081 0.919 20 C -0.145 4.145 21 C -0.123 4.123 22 C -0.217 4.217 23 C -0.195 4.195 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.012 -7.276 2.380 12.604 hybrid contribution 0.332 -0.823 0.424 0.984 sum -9.680 -8.099 2.805 12.930 Atomic orbital electron populations 1.23070 0.75427 1.02786 1.02385 1.86244 1.23351 1.31879 1.87545 1.17528 0.82316 0.81784 0.76659 1.90946 1.64056 1.34846 1.56889 1.47579 1.00983 1.10745 1.73579 1.22353 0.90802 0.88697 1.00234 1.23510 0.94004 0.99323 1.01929 1.20284 0.90223 0.91813 0.98308 0.93958 1.21124 0.94017 1.16123 1.23590 0.88621 1.24937 0.97064 0.96004 0.94669 1.69869 1.08840 1.39412 1.34904 0.87052 0.78491 0.83147 0.81184 1.20308 1.22160 1.19027 1.21675 0.90906 0.83055 0.97703 0.91885 1.21802 0.99778 0.99335 0.93619 1.21520 1.02929 0.94531 0.93337 1.22410 0.98646 0.99425 1.01248 1.21747 0.99869 1.00349 0.97513 0.88531 0.92268 0.92170 0.92004 0.91023 0.91869 0.89293 0.92555 0.93079 0.89929 0.85923 0.94559 0.91023 0.94799 0.92515 0.93959 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 10.56 101.05 1.07 1.75 16 2 O -0.38 -5.92 10.07 -40.31 -0.41 -6.33 16 3 C 0.66 12.29 6.10 54.06 0.33 12.62 16 4 O -0.58 -12.07 15.19 -19.28 -0.29 -12.36 16 5 N -0.59 -10.81 1.67 -168.74 -0.28 -11.09 16 6 C 0.10 1.68 5.77 -2.52 -0.01 1.66 16 7 C -0.15 -2.84 4.44 -24.58 -0.11 -2.95 16 8 C 0.01 0.28 2.15 -89.93 -0.19 0.09 16 9 H 0.04 0.91 7.37 -51.93 -0.38 0.53 16 10 C -0.51 -12.54 6.51 -34.44 -0.22 -12.77 16 11 H 0.10 2.52 5.10 -52.49 -0.27 2.25 16 12 C 0.08 1.97 5.46 -17.82 -0.10 1.87 16 13 N -0.89 -25.14 13.96 55.43 0.77 -24.36 16 14 Si 0.87 19.85 24.51 -169.99 -4.17 15.68 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.27 -5.74 6.46 56.52 0.37 -5.38 16 18 C 0.17 3.33 3.23 -66.95 -0.22 3.12 16 19 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 20 C -0.11 -2.17 3.93 -26.73 -0.10 -2.27 16 21 C -0.11 -2.07 1.81 -90.62 -0.16 -2.23 16 22 C -0.16 -2.89 7.06 37.16 0.26 -2.63 16 23 C -0.14 -2.54 9.17 37.16 0.34 -2.20 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.07 7.28 -51.93 -0.38 0.70 16 29 H 0.06 1.19 5.14 -51.93 -0.27 0.92 16 30 H 0.09 1.75 5.15 -51.93 -0.27 1.48 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.05 1.06 6.75 -51.93 -0.35 0.71 16 33 H 0.08 1.76 6.23 -51.93 -0.32 1.43 16 34 H 0.12 2.70 3.46 -51.93 -0.18 2.52 16 35 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.07 1.27 2.60 -51.93 -0.14 1.14 16 37 H 0.03 0.63 7.45 -51.93 -0.39 0.24 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -28.33 290.36 -5.03 -33.36 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.91 Total: 4.66 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 0.88 Total: -3.95 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.49 Total: -35.45 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.70 Total: -18.69 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.17 Total: 15.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.33 -5.03 -33.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257732653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.762 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds