Wall clock time and date at job start Mon Mar 30 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34643 * 116.99880 * 2 1 4 4 O 1.21505 * 120.00011 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99632 * 179.97438 * 3 2 1 6 6 C 1.47420 * 125.65113 * 354.95746 * 5 3 2 7 7 C 1.54904 * 104.83607 * 155.83256 * 6 5 3 8 8 C 1.55550 * 101.59564 * 37.04305 * 7 6 5 9 9 H 1.08998 * 110.78385 * 82.76329 * 8 7 6 10 10 C 1.50704 * 110.83376 * 206.15315 * 8 7 6 11 11 H 1.07999 * 120.00113 * 113.36633 * 10 8 7 12 12 C 1.37873 * 120.00030 * 293.36707 * 10 8 7 13 13 N 1.31517 * 120.00169 * 359.97438 * 12 10 8 14 14 Si 1.86808 * 120.00089 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47111 * 59.99954 * 14 12 10 16 16 H 1.48496 * 109.46998 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47140 * 300.00150 * 14 12 10 18 18 C 1.47016 * 125.64546 * 174.90935 * 5 3 2 19 19 H 1.09000 * 109.88485 * 300.51578 * 18 5 3 20 20 C 1.53002 * 109.88448 * 61.52876 * 18 5 3 21 21 C 1.53001 * 109.47104 * 58.85331 * 20 18 5 22 22 C 1.52999 * 109.46895 * 168.43879 * 21 20 18 23 23 C 1.53003 * 109.46965 * 288.43854 * 21 20 18 24 24 H 1.08991 * 109.47164 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46929 * 300.00611 * 1 2 3 26 26 H 1.09003 * 109.46593 * 59.99878 * 1 2 3 27 27 H 1.08997 * 110.36434 * 274.67314 * 6 5 3 28 28 H 1.09002 * 110.37165 * 36.88257 * 6 5 3 29 29 H 1.09001 * 111.00940 * 155.08105 * 7 6 5 30 30 H 1.09002 * 111.00710 * 278.89740 * 7 6 5 31 31 H 0.96996 * 119.99926 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47623 * 178.85930 * 20 18 5 33 33 H 1.09004 * 109.46953 * 298.85479 * 20 18 5 34 34 H 1.09002 * 109.47219 * 48.43533 * 21 20 18 35 35 H 1.09000 * 109.47738 * 60.00266 * 22 21 20 36 36 H 1.08999 * 109.47093 * 179.97438 * 22 21 20 37 37 H 1.08993 * 109.47445 * 299.99678 * 22 21 20 38 38 H 1.08997 * 109.47497 * 68.98924 * 23 21 20 39 39 H 1.09001 * 109.46755 * 188.99357 * 23 21 20 40 40 H 1.09004 * 109.46790 * 308.98559 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.3296 0.1235 0.1064 7 6 5.6475 0.6112 -0.5455 8 6 5.6914 2.0972 -0.0880 9 1 6.1020 2.1801 0.9183 10 6 6.4837 2.9339 -1.0593 11 1 5.9890 3.6932 -1.6466 12 6 7.8402 2.7299 -1.1981 13 7 8.4428 1.8055 -0.4825 14 14 8.8222 3.7665 -2.4026 15 1 8.7114 5.1991 -2.0277 16 1 10.2479 3.3530 -2.3637 17 1 8.2878 3.5710 -3.7742 18 6 4.2026 2.5033 -0.1054 19 1 3.9690 3.0154 -1.0388 20 6 3.8996 3.4206 1.0811 21 6 4.2277 2.6919 2.3858 22 6 4.2031 3.6885 3.5465 23 6 3.1893 1.5957 2.6327 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 4.4963 -0.1338 1.1524 28 1 3.9311 -0.7342 -0.4355 29 1 6.5032 0.0583 -0.1578 30 1 5.5968 0.5371 -1.6318 31 1 9.3970 1.6618 -0.5804 32 1 4.5060 4.3233 1.0066 33 1 2.8436 3.6905 1.0713 34 1 5.2187 2.2438 2.3125 35 1 3.2122 4.1365 3.6199 36 1 4.4364 3.1693 4.4761 37 1 4.9428 4.4694 3.3707 38 1 3.3140 0.8040 1.8939 39 1 3.3262 1.1843 3.6328 40 1 2.1880 2.0179 2.5474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257732654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:06 Heat of formation + Delta-G solvation = -80.387971 kcal Electronic energy + Delta-G solvation = -20757.918647 eV Core-core repulsion = 17765.955224 eV Total energy + Delta-G solvation = -2991.963423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38766 -38.33001 -35.67853 -34.74917 -33.10198 -30.62536 -29.63584 -27.39454 -26.62376 -25.94776 -23.50412 -22.31273 -20.52038 -20.18409 -18.66113 -17.25447 -16.89916 -16.20671 -15.98645 -14.77551 -14.61215 -14.44285 -13.75190 -13.33810 -13.12716 -12.95000 -12.64116 -12.57314 -12.16992 -11.87703 -11.63528 -11.38426 -11.30085 -11.04776 -10.97629 -10.80701 -10.52003 -10.45075 -10.30355 -10.18734 -10.05681 -9.88808 -9.63566 -9.20296 -8.86107 -8.45362 -7.95767 -6.11166 -4.13840 2.62492 3.29038 3.31452 3.33834 3.37179 4.37601 4.50509 5.21930 5.27768 5.33790 5.37717 5.48439 5.51001 5.56406 5.67439 5.90592 5.98522 6.01898 6.07269 6.19073 6.23617 6.28216 6.32285 6.43900 6.50169 6.60704 6.69375 6.71975 6.81160 6.92561 7.05455 7.11998 7.16092 7.44128 7.72230 7.89244 8.13166 8.27904 8.78094 8.87623 9.50599 10.98678 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.007194 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.919143 B = 3891.198063 C = 4410.429124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.376 6.376 3 C 0.659 3.341 4 O -0.581 6.581 5 N -0.586 5.586 6 C 0.092 3.908 7 C -0.113 4.113 8 C 0.051 3.949 9 H 0.056 0.944 10 C -0.514 4.514 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.156 3.844 19 H 0.069 0.931 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.142 4.142 23 C -0.161 4.161 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -3.716 3.912 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.291 6.291 3 C 0.414 3.586 4 O -0.472 6.472 5 N -0.326 5.326 6 C -0.030 4.030 7 C -0.152 4.152 8 C 0.032 3.968 9 H 0.073 0.927 10 C -0.553 4.553 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.055 3.945 19 H 0.087 0.913 20 C -0.159 4.159 21 C -0.114 4.114 22 C -0.200 4.200 23 C -0.218 4.218 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.533 -3.519 3.942 10.900 hybrid contribution 0.364 0.510 -0.653 0.905 sum -9.169 -3.010 3.289 10.195 Atomic orbital electron populations 1.23052 0.75605 1.02710 1.02293 1.86259 1.23216 1.32009 1.87590 1.17604 0.82515 0.81709 0.76777 1.90923 1.64178 1.34807 1.57247 1.47619 1.00818 1.11103 1.73047 1.22622 0.91675 0.88180 1.00523 1.22868 0.93070 0.99707 0.99554 1.19946 0.86701 0.91675 0.98506 0.92664 1.20967 0.92722 1.18882 1.22698 0.92377 1.24915 0.97626 0.95191 0.95779 1.69924 1.10392 1.32199 1.40016 0.86651 0.78929 0.80763 0.81646 1.20187 1.21303 1.20268 1.22040 0.92602 0.82459 0.97355 0.91341 1.21932 1.01591 0.98511 0.93902 1.21137 1.00144 0.95703 0.94383 1.21820 1.01004 0.99257 0.97886 1.22361 0.98694 0.99894 1.00833 0.88597 0.92302 0.92285 0.91800 0.91868 0.89949 0.92195 0.92810 0.90959 0.91671 0.89939 0.93550 0.93501 0.92779 0.90732 0.94280 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.56 101.05 1.07 1.78 16 2 O -0.38 -6.21 10.06 -40.33 -0.41 -6.62 16 3 C 0.66 12.67 6.11 54.06 0.33 13.00 16 4 O -0.58 -12.33 14.88 -19.28 -0.29 -12.62 16 5 N -0.59 -11.34 1.66 -168.76 -0.28 -11.62 16 6 C 0.09 1.66 6.19 -2.53 -0.02 1.65 16 7 C -0.11 -2.40 5.98 -24.37 -0.15 -2.55 16 8 C 0.05 1.15 2.10 -89.72 -0.19 0.96 16 9 H 0.06 1.34 5.64 -51.93 -0.29 1.05 16 10 C -0.51 -13.20 8.48 -34.44 -0.29 -13.49 16 11 H 0.06 1.50 7.53 -52.49 -0.40 1.10 16 12 C 0.07 1.76 5.36 -17.82 -0.10 1.66 16 13 N -0.89 -23.81 12.53 55.43 0.69 -23.11 16 14 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.16 3.26 2.77 -66.95 -0.19 3.08 16 19 H 0.07 1.55 7.63 -51.93 -0.40 1.15 16 20 C -0.12 -2.34 4.52 -26.73 -0.12 -2.46 16 21 C -0.10 -1.68 2.76 -90.62 -0.25 -1.93 16 22 C -0.14 -2.18 9.15 37.16 0.34 -1.84 16 23 C -0.16 -2.71 7.65 37.16 0.28 -2.43 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.10 6.64 -51.93 -0.34 0.75 16 28 H 0.06 1.05 7.99 -51.93 -0.41 0.63 16 29 H 0.08 1.83 7.80 -51.93 -0.40 1.42 16 30 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 33 H 0.06 1.31 6.58 -51.93 -0.34 0.97 16 34 H 0.08 1.58 5.72 -51.93 -0.30 1.29 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.31 2.63 -51.93 -0.14 1.17 16 39 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.04 0.79 7.57 -51.93 -0.39 0.39 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -27.93 308.75 -6.26 -34.19 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.35 Total: 2.27 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.73 Total: -2.57 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.41 Total: -34.73 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.69 Total: -19.24 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.93 -6.26 -34.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257732654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.196 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds