Wall clock time and date at job start Mon Mar 30 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34643 * 116.99880 * 2 1 4 4 O 1.21505 * 120.00011 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99632 * 179.97438 * 3 2 1 6 6 C 1.47420 * 125.65113 * 354.95746 * 5 3 2 7 7 C 1.54904 * 104.83607 * 155.83256 * 6 5 3 8 8 C 1.55550 * 101.59564 * 37.04305 * 7 6 5 9 9 H 1.08998 * 110.78385 * 82.76329 * 8 7 6 10 10 C 1.50704 * 110.83376 * 206.15315 * 8 7 6 11 11 H 1.07999 * 120.00113 * 113.36633 * 10 8 7 12 12 C 1.37873 * 120.00030 * 293.36707 * 10 8 7 13 13 N 1.31517 * 120.00169 * 359.97438 * 12 10 8 14 14 Si 1.86808 * 120.00089 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47111 * 59.99954 * 14 12 10 16 16 H 1.48496 * 109.46998 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47140 * 300.00150 * 14 12 10 18 18 C 1.47016 * 125.64546 * 174.90935 * 5 3 2 19 19 H 1.09000 * 109.88485 * 300.51578 * 18 5 3 20 20 C 1.53002 * 109.88448 * 61.52876 * 18 5 3 21 21 C 1.53001 * 109.47104 * 58.85331 * 20 18 5 22 22 C 1.52999 * 109.46895 * 168.43879 * 21 20 18 23 23 C 1.53003 * 109.46965 * 288.43854 * 21 20 18 24 24 H 1.08991 * 109.47164 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46929 * 300.00611 * 1 2 3 26 26 H 1.09003 * 109.46593 * 59.99878 * 1 2 3 27 27 H 1.08997 * 110.36434 * 274.67314 * 6 5 3 28 28 H 1.09002 * 110.37165 * 36.88257 * 6 5 3 29 29 H 1.09001 * 111.00940 * 155.08105 * 7 6 5 30 30 H 1.09002 * 111.00710 * 278.89740 * 7 6 5 31 31 H 0.96996 * 119.99926 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47623 * 178.85930 * 20 18 5 33 33 H 1.09004 * 109.46953 * 298.85479 * 20 18 5 34 34 H 1.09002 * 109.47219 * 48.43533 * 21 20 18 35 35 H 1.09000 * 109.47738 * 60.00266 * 22 21 20 36 36 H 1.08999 * 109.47093 * 179.97438 * 22 21 20 37 37 H 1.08993 * 109.47445 * 299.99678 * 22 21 20 38 38 H 1.08997 * 109.47497 * 68.98924 * 23 21 20 39 39 H 1.09001 * 109.46755 * 188.99357 * 23 21 20 40 40 H 1.09004 * 109.46790 * 308.98559 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.3296 0.1235 0.1064 7 6 5.6475 0.6112 -0.5455 8 6 5.6914 2.0972 -0.0880 9 1 6.1020 2.1801 0.9183 10 6 6.4837 2.9339 -1.0593 11 1 5.9890 3.6932 -1.6466 12 6 7.8402 2.7299 -1.1981 13 7 8.4428 1.8055 -0.4825 14 14 8.8222 3.7665 -2.4026 15 1 8.7114 5.1991 -2.0277 16 1 10.2479 3.3530 -2.3637 17 1 8.2878 3.5710 -3.7742 18 6 4.2026 2.5033 -0.1054 19 1 3.9690 3.0154 -1.0388 20 6 3.8996 3.4206 1.0811 21 6 4.2277 2.6919 2.3858 22 6 4.2031 3.6885 3.5465 23 6 3.1893 1.5957 2.6327 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 4.4963 -0.1338 1.1524 28 1 3.9311 -0.7342 -0.4355 29 1 6.5032 0.0583 -0.1578 30 1 5.5968 0.5371 -1.6318 31 1 9.3970 1.6618 -0.5804 32 1 4.5060 4.3233 1.0066 33 1 2.8436 3.6905 1.0713 34 1 5.2187 2.2438 2.3125 35 1 3.2122 4.1365 3.6199 36 1 4.4364 3.1693 4.4761 37 1 4.9428 4.4694 3.3707 38 1 3.3140 0.8040 1.8939 39 1 3.3262 1.1843 3.6328 40 1 2.1880 2.0179 2.5474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257732654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:05 Heat of formation + Delta-G solvation = -94.675018 kcal Electronic energy + Delta-G solvation = -20758.538180 eV Core-core repulsion = 17765.955224 eV Total energy + Delta-G solvation = -2992.582956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.89766 -39.82141 -37.14147 -36.21238 -34.98228 -32.37011 -31.21322 -28.62228 -27.94132 -27.58349 -25.22042 -23.86570 -22.18640 -21.62872 -20.23274 -18.86855 -18.49780 -17.76898 -17.45490 -16.51310 -16.29033 -15.86910 -15.10883 -14.81724 -14.51383 -14.47137 -14.33594 -13.97475 -13.65047 -13.24416 -13.07403 -12.96056 -12.85785 -12.78282 -12.61841 -12.42088 -12.23491 -11.93817 -11.73325 -11.67240 -11.56313 -11.43200 -11.30656 -10.98864 -10.67168 -10.41615 -9.52198 -8.11698 -6.19125 1.22932 1.45585 1.46812 1.53661 1.81081 2.46231 3.11746 3.21155 3.89139 4.00741 4.09034 4.17293 4.32576 4.38728 4.40144 4.43987 4.52590 4.66704 4.70985 4.73328 4.80601 4.81640 4.87604 4.99005 5.05492 5.10240 5.26676 5.27904 5.29833 5.38343 5.43176 5.52890 5.59992 5.61820 5.81270 5.98479 6.34188 6.60619 6.86092 7.29832 7.47409 8.97228 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.007194 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.919143 B = 3891.198063 C = 4410.429124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.376 6.376 3 C 0.662 3.338 4 O -0.605 6.605 5 N -0.589 5.589 6 C 0.104 3.896 7 C -0.106 4.106 8 C 0.050 3.950 9 H 0.042 0.958 10 C -0.531 4.531 11 H 0.049 0.951 12 C 0.027 3.973 13 N -0.909 5.909 14 Si 0.946 3.054 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.276 1.276 18 C 0.163 3.837 19 H 0.044 0.956 20 C -0.114 4.114 21 C -0.093 4.093 22 C -0.138 4.138 23 C -0.152 4.152 24 H 0.138 0.862 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 -4.496 4.514 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.290 6.290 3 C 0.417 3.583 4 O -0.497 6.497 5 N -0.328 5.328 6 C -0.017 4.017 7 C -0.145 4.145 8 C 0.032 3.968 9 H 0.060 0.940 10 C -0.569 4.569 11 H 0.067 0.933 12 C -0.174 4.174 13 N -0.548 5.548 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.201 1.201 18 C 0.062 3.938 19 H 0.062 0.938 20 C -0.152 4.152 21 C -0.112 4.112 22 C -0.195 4.195 23 C -0.209 4.209 24 H 0.156 0.844 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.387 -4.319 4.544 12.133 hybrid contribution 0.550 0.729 -0.857 1.252 sum -9.837 -3.590 3.687 11.102 Atomic orbital electron populations 1.23467 0.73059 1.05497 1.02362 1.86264 1.25592 1.30074 1.87065 1.17611 0.82202 0.82254 0.76212 1.90906 1.64645 1.35941 1.58226 1.47504 1.01296 1.10710 1.73307 1.22555 0.89669 0.88154 1.01371 1.22657 0.94554 0.98604 0.98685 1.19807 0.87493 0.92493 0.97045 0.94045 1.21259 0.93417 1.19128 1.23146 0.93317 1.25526 0.98453 0.96190 0.97182 1.70008 1.10526 1.33195 1.41053 0.85796 0.77740 0.79437 0.79775 1.19939 1.20870 1.20132 1.21733 0.91790 0.83324 0.96973 0.93792 1.21844 1.00792 0.98111 0.94449 1.21088 0.99442 0.96379 0.94256 1.21773 1.01414 0.98766 0.97552 1.22257 0.97667 0.99202 1.01814 0.84449 0.92123 0.92416 0.90284 0.89720 0.91125 0.93705 0.92817 0.91737 0.92404 0.91560 0.92892 0.91724 0.92955 0.91407 0.92236 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.08 10.56 113.37 1.20 2.28 16 2 O -0.38 -11.54 10.06 -55.52 -0.56 -12.10 16 3 C 0.66 24.66 6.11 129.79 0.79 25.46 16 4 O -0.60 -25.29 14.88 19.82 0.29 -25.00 16 5 N -0.59 -22.38 1.66 -918.24 -1.52 -23.90 16 6 C 0.10 3.63 6.19 86.85 0.54 4.16 16 7 C -0.11 -4.52 5.98 32.12 0.19 -4.33 16 8 C 0.05 2.34 2.10 -10.21 -0.02 2.32 16 9 H 0.04 2.06 5.64 -2.39 -0.01 2.04 16 10 C -0.53 -27.81 8.48 25.60 0.22 -27.60 16 11 H 0.05 2.58 7.53 -2.91 -0.02 2.55 16 12 C 0.03 1.40 5.36 84.65 0.45 1.86 16 13 N -0.91 -49.16 12.53 21.45 0.27 -48.89 16 14 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 C 0.16 6.93 2.77 45.34 0.13 7.05 16 19 H 0.04 2.06 7.63 -2.39 -0.02 2.04 16 20 C -0.11 -4.42 4.52 30.60 0.14 -4.28 16 21 C -0.09 -3.21 2.76 -10.79 -0.03 -3.24 16 22 C -0.14 -4.01 9.15 71.98 0.66 -3.35 16 23 C -0.15 -4.86 7.65 71.98 0.55 -4.31 16 24 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 2.56 6.64 -2.39 -0.02 2.54 16 28 H 0.08 2.62 7.99 -2.39 -0.02 2.60 16 29 H 0.07 3.16 7.80 -2.39 -0.02 3.14 16 30 H 0.04 2.01 8.05 -2.39 -0.02 1.99 16 31 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.06 2.56 8.10 -2.39 -0.02 2.54 16 33 H 0.06 2.33 6.58 -2.38 -0.02 2.31 16 34 H 0.07 2.52 5.72 -2.39 -0.01 2.51 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 2.25 2.63 -2.39 -0.01 2.24 16 39 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 40 H 0.03 1.19 7.57 -2.38 -0.02 1.18 16 Total: -1.00 -59.40 308.75 6.34 -53.06 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.01 Total: 16.68 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 4.81 Total: -3.99 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.26 Total: -72.80 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.26 Total: -37.10 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -59.40 6.34 -53.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257732654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.616 kcal (2) G-P(sol) polarization free energy of solvation -59.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds