Wall clock time and date at job start Mon Mar 30 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34631 * 116.99973 * 2 1 4 4 O 1.21511 * 120.00184 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99681 * 180.02562 * 3 2 1 6 6 C 1.47419 * 125.64845 * 355.22649 * 5 3 2 7 7 C 1.54909 * 104.83281 * 155.83984 * 6 5 3 8 8 C 1.55163 * 101.61619 * 36.98768 * 7 6 5 9 9 H 1.09002 * 110.71724 * 206.15189 * 8 7 6 10 10 C 1.50701 * 110.71509 * 82.88123 * 8 7 6 11 11 H 1.07995 * 120.00655 * 294.47284 * 10 8 7 12 12 C 1.37883 * 119.99548 * 114.48084 * 10 8 7 13 13 N 1.31511 * 119.99942 * 177.24777 * 12 10 8 14 14 Si 1.86796 * 120.00134 * 357.24038 * 12 10 8 15 15 H 1.48506 * 109.46921 * 87.92633 * 14 12 10 16 16 H 1.48503 * 109.47305 * 207.92700 * 14 12 10 17 17 H 1.48496 * 109.47342 * 327.93113 * 14 12 10 18 18 C 1.47024 * 125.64607 * 175.19015 * 5 3 2 19 19 H 1.09003 * 109.87797 * 300.50567 * 18 5 3 20 20 C 1.53000 * 109.88314 * 61.51772 * 18 5 3 21 21 C 1.52998 * 109.46753 * 185.90491 * 20 18 5 22 22 C 1.53001 * 109.47367 * 65.46011 * 21 20 18 23 23 C 1.53006 * 109.46902 * 185.45763 * 21 20 18 24 24 H 1.08996 * 109.46948 * 59.99324 * 1 2 3 25 25 H 1.09003 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46562 * 299.99758 * 1 2 3 27 27 H 1.09000 * 110.36903 * 36.99776 * 6 5 3 28 28 H 1.09002 * 110.45852 * 274.72393 * 6 5 3 29 29 H 1.08995 * 111.00874 * 155.08489 * 7 6 5 30 30 H 1.09007 * 111.00207 * 278.89830 * 7 6 5 31 31 H 0.96999 * 120.00690 * 179.97438 * 13 12 10 32 32 H 1.08990 * 109.47203 * 305.90404 * 20 18 5 33 33 H 1.08999 * 109.46654 * 65.90771 * 20 18 5 34 34 H 1.09001 * 109.47431 * 305.45325 * 21 20 18 35 35 H 1.08992 * 109.47391 * 53.73175 * 22 21 20 36 36 H 1.08998 * 109.47234 * 173.73678 * 22 21 20 37 37 H 1.09005 * 109.46790 * 293.73697 * 22 21 20 38 38 H 1.08997 * 109.47006 * 60.00198 * 23 21 20 39 39 H 1.09001 * 109.47110 * 180.02562 * 23 21 20 40 40 H 1.09001 * 109.46719 * 299.99997 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4093 1.2700 -0.0005 6 6 4.3297 0.1228 0.0986 7 6 5.6470 0.6139 -0.5521 8 6 5.6909 2.0943 -0.0895 9 1 6.2638 2.7007 -0.7912 10 6 6.2626 2.2017 1.3007 11 1 5.7297 1.7763 2.1381 12 6 7.4661 2.8432 1.5035 13 7 7.9387 2.9845 2.7226 14 14 8.4254 3.5115 0.0466 15 1 7.9723 4.8938 -0.2524 16 1 9.8743 3.5251 0.3722 17 1 8.1924 2.6471 -1.1381 18 6 4.2026 2.5038 -0.1008 19 1 3.9681 3.0207 -1.0313 20 6 3.9007 3.4149 1.0907 21 6 4.6163 4.7541 0.9028 22 6 4.0288 5.4807 -0.3087 23 6 4.4267 5.6136 2.1544 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 3.9316 -0.7315 -0.4490 28 1 4.4979 -0.1417 1.1426 29 1 6.5030 0.0590 -0.1682 30 1 5.5952 0.5455 -1.6388 31 1 8.7855 3.4355 2.8653 32 1 2.8259 3.5833 1.1561 33 1 4.2508 2.9413 2.0080 34 1 5.6797 4.5782 0.7406 35 1 2.9474 5.5579 -0.1969 36 1 4.4593 6.4798 -0.3771 37 1 4.2613 4.9220 -1.2153 38 1 4.8452 5.0960 3.0174 39 1 4.9361 6.5679 2.0203 40 1 3.3633 5.7894 2.3166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257732655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:07 Heat of formation + Delta-G solvation = -107.367435 kcal Electronic energy + Delta-G solvation = -20704.711540 eV Core-core repulsion = 17711.578200 eV Total energy + Delta-G solvation = -2993.133341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.65551 -39.82334 -37.18195 -36.68645 -34.72602 -32.65913 -30.94724 -28.67461 -27.99900 -27.30037 -25.80783 -23.92344 -21.86975 -21.12860 -20.38839 -19.07933 -18.70996 -17.84897 -17.46284 -16.43894 -15.99972 -15.86114 -15.29929 -14.88534 -14.67027 -14.52242 -14.31821 -14.07363 -13.71091 -13.44078 -13.07391 -13.01905 -12.90425 -12.68472 -12.66413 -12.49477 -11.88967 -11.79022 -11.73681 -11.69535 -11.57729 -11.49193 -11.28930 -10.94812 -10.75100 -10.56559 -9.60004 -8.15830 -6.15189 1.21552 1.41361 1.44601 1.50918 1.77560 2.42362 3.09467 3.18088 3.88988 4.08090 4.13363 4.23094 4.30313 4.34284 4.38614 4.39564 4.54108 4.64973 4.65615 4.69300 4.83829 4.85980 4.96668 5.02356 5.09770 5.13692 5.14257 5.22523 5.23463 5.26536 5.39772 5.52209 5.54145 5.67605 5.77811 5.82331 6.42526 6.59551 6.85557 7.27244 7.45572 8.99839 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.008421 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.330359 B = 3324.053038 C = 4000.993830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.376 6.376 3 C 0.655 3.345 4 O -0.604 6.604 5 N -0.595 5.595 6 C 0.117 3.883 7 C -0.129 4.129 8 C 0.003 3.997 9 H 0.058 0.942 10 C -0.474 4.474 11 H 0.038 0.962 12 C 0.030 3.970 13 N -0.942 5.942 14 Si 0.914 3.086 15 H -0.266 1.266 16 H -0.297 1.297 17 H -0.241 1.241 18 C 0.160 3.840 19 H 0.064 0.936 20 C -0.092 4.092 21 C -0.092 4.092 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.262 0.738 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.058 0.942 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 -3.310 -8.189 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.290 6.290 3 C 0.410 3.590 4 O -0.497 6.497 5 N -0.334 5.334 6 C -0.004 4.004 7 C -0.167 4.167 8 C -0.016 4.016 9 H 0.076 0.924 10 C -0.512 4.512 11 H 0.056 0.944 12 C -0.167 4.167 13 N -0.582 5.582 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.224 1.224 17 H -0.165 1.165 18 C 0.058 3.942 19 H 0.082 0.918 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.197 4.197 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.183 -2.994 -8.089 12.598 hybrid contribution 0.555 0.435 0.127 0.716 sum -8.629 -2.558 -7.961 12.016 Atomic orbital electron populations 1.23473 0.72975 1.05519 1.02385 1.86253 1.25667 1.30009 1.87030 1.17770 0.82352 0.82322 0.76592 1.90910 1.64683 1.35879 1.58192 1.47461 1.01388 1.11028 1.73534 1.22263 0.89280 0.88103 1.00799 1.22988 0.96395 0.97832 0.99534 1.20324 0.90577 0.94352 0.96354 0.92413 1.20677 1.04231 1.34467 0.91844 0.94391 1.25610 0.98131 0.95899 0.97092 1.70017 1.21053 1.44771 1.22367 0.86252 0.77717 0.80263 0.81839 1.19125 1.22376 1.16468 1.21940 0.91605 0.83107 0.97530 0.91795 1.21600 0.97810 0.95317 0.98270 1.21012 1.00399 0.94131 0.95579 1.21847 1.00549 1.00045 0.97265 1.21673 1.00935 0.99115 0.97287 0.91939 0.84409 0.92563 0.88949 0.92644 0.90001 0.90438 0.92916 0.93797 0.93267 0.91686 0.92894 0.91906 0.92910 0.94797 0.92259 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.09 10.56 113.37 1.20 2.29 16 2 O -0.38 -11.68 10.07 -55.40 -0.56 -12.24 16 3 C 0.65 24.82 8.43 129.79 1.09 25.91 16 4 O -0.60 -25.57 14.91 19.81 0.30 -25.27 16 5 N -0.59 -22.67 3.07 -918.13 -2.81 -25.49 16 6 C 0.12 3.98 6.76 86.86 0.59 4.57 16 7 C -0.13 -4.48 6.57 31.99 0.21 -4.27 16 8 C 0.00 0.14 2.20 -10.33 -0.02 0.12 16 9 H 0.06 2.37 4.90 -2.39 -0.01 2.35 16 10 C -0.47 -23.83 5.99 25.60 0.15 -23.67 16 11 H 0.04 2.19 7.14 -2.91 -0.02 2.17 16 12 C 0.03 1.60 4.86 84.66 0.41 2.01 16 13 N -0.94 -54.73 13.96 21.45 0.30 -54.43 16 14 Si 0.91 40.30 26.04 68.60 1.79 42.09 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.24 -9.62 6.65 99.48 0.66 -8.96 16 18 C 0.16 6.43 2.72 45.36 0.12 6.55 16 19 H 0.06 2.48 6.45 -2.39 -0.02 2.47 16 20 C -0.09 -3.93 3.80 30.59 0.12 -3.81 16 21 C -0.09 -3.68 2.65 -10.79 -0.03 -3.71 16 22 C -0.14 -4.67 8.82 71.98 0.63 -4.03 16 23 C -0.13 -4.98 9.19 71.98 0.66 -4.32 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 2.60 7.99 -2.39 -0.02 2.58 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 2.87 8.03 -2.39 -0.02 2.85 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.04 1.93 6.53 -2.39 -0.02 1.91 16 33 H 0.05 2.43 6.04 -2.39 -0.01 2.41 16 34 H 0.06 2.91 4.92 -2.39 -0.01 2.90 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.70 6.75 -2.38 -0.02 1.68 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -62.64 309.93 5.11 -57.53 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.97 Total: 20.18 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.14 Total: -2.36 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.52 Total: -79.92 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.26 Total: -37.51 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.79 Total: 42.09 kcal Total: -62.64 5.11 -57.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257732655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.841 kcal (2) G-P(sol) polarization free energy of solvation -62.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds