Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34636 * 117.00007 * 2 1 4 4 O 1.21511 * 119.99996 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99648 * 180.02562 * 3 2 1 6 6 C 1.47417 * 125.65101 * 355.29478 * 5 3 2 7 7 C 1.54915 * 104.83225 * 204.16773 * 6 5 3 8 8 C 1.55149 * 101.58058 * 322.98816 * 7 6 5 9 9 H 1.09007 * 110.72527 * 276.96117 * 8 7 6 10 10 C 1.50697 * 110.72202 * 153.86561 * 8 7 6 11 11 H 1.07994 * 120.00220 * 241.45500 * 10 8 7 12 12 C 1.37884 * 119.99828 * 61.45223 * 10 8 7 13 13 N 1.31511 * 119.99758 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99875 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46906 * 60.00666 * 14 12 10 16 16 H 1.48496 * 109.47279 * 300.00309 * 14 12 10 17 17 H 1.48497 * 109.46685 * 180.02562 * 14 12 10 18 18 C 1.47017 * 125.64432 * 175.33936 * 5 3 2 19 19 H 1.08999 * 109.88543 * 59.48654 * 18 5 3 20 20 C 1.52999 * 109.88359 * 298.31928 * 18 5 3 21 21 C 1.52998 * 109.47188 * 177.77675 * 20 18 5 22 22 C 1.53007 * 109.47248 * 174.16400 * 21 20 18 23 23 C 1.53002 * 109.47380 * 294.16393 * 21 20 18 24 24 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47091 * 299.99951 * 1 2 3 26 26 H 1.09001 * 109.46972 * 60.00177 * 1 2 3 27 27 H 1.09000 * 110.37243 * 85.32618 * 6 5 3 28 28 H 1.09006 * 110.37016 * 323.00492 * 6 5 3 29 29 H 1.09010 * 111.00065 * 204.91717 * 7 6 5 30 30 H 1.08991 * 111.03962 * 81.07919 * 7 6 5 31 31 H 0.97002 * 120.00206 * 359.97438 * 13 12 10 32 32 H 1.09003 * 109.47053 * 297.77428 * 20 18 5 33 33 H 1.08994 * 109.46995 * 57.77662 * 20 18 5 34 34 H 1.09008 * 109.47330 * 54.16755 * 21 20 18 35 35 H 1.08995 * 109.46985 * 60.00089 * 22 21 20 36 36 H 1.08998 * 109.47038 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.46885 * 300.00235 * 22 21 20 38 38 H 1.08997 * 109.46726 * 55.14072 * 23 21 20 39 39 H 1.08993 * 109.47158 * 175.14455 * 23 21 20 40 40 H 1.09006 * 109.46838 * 295.14564 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.3297 0.1227 0.0971 7 6 5.6421 0.7148 0.6689 8 6 5.6901 2.0988 -0.0307 9 1 6.1141 2.0109 -1.0310 10 6 6.4751 3.0861 0.7940 11 1 5.9948 3.9766 1.1718 12 6 7.8064 2.8526 1.0662 13 7 8.3914 1.7685 0.6056 14 14 8.7796 4.0768 2.0878 15 1 8.1568 4.2075 3.4295 16 1 8.7783 5.3984 1.4106 17 1 10.1775 3.5979 2.2350 18 6 4.2025 2.5040 -0.0977 19 1 3.9610 3.1664 0.7336 20 6 3.9135 3.2052 -1.4265 21 6 4.7011 4.5151 -1.4938 22 6 4.5276 5.1441 -2.8778 23 6 4.1796 5.4793 -0.4264 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.5056 -0.3076 -0.8887 28 1 3.9267 -0.6304 0.7743 29 1 6.5008 0.1049 0.3878 30 1 5.5822 0.8261 1.7514 31 1 7.8861 1.1330 0.0748 32 1 4.2130 2.5584 -2.2512 33 1 2.8472 3.4182 -1.5005 34 1 5.7576 4.3135 -1.3163 35 1 3.4713 5.3458 -3.0553 36 1 5.0883 6.0775 -2.9255 37 1 4.8991 4.4572 -3.6382 38 1 4.2233 4.9979 0.5505 39 1 4.7959 6.3782 -0.4165 40 1 3.1479 5.7486 -0.6530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257732656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -100.086252 kcal Electronic energy + Delta-G solvation = -20449.444396 eV Core-core repulsion = 17456.626791 eV Total energy + Delta-G solvation = -2992.817605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21408 -38.33216 -35.80321 -35.30803 -33.38022 -30.27336 -29.53490 -27.35179 -26.64251 -25.79020 -23.55475 -22.57717 -20.53384 -19.81831 -18.80596 -17.67308 -16.85111 -16.42000 -16.22179 -15.08935 -14.48063 -14.03140 -13.79684 -13.41538 -13.31833 -13.02352 -12.58050 -12.48267 -12.21627 -11.94804 -11.82248 -11.62766 -11.31832 -11.17654 -10.93128 -10.75279 -10.54792 -10.40203 -10.18175 -10.12828 -10.12051 -9.90444 -9.86394 -9.35835 -8.59070 -8.42967 -8.13353 -6.38493 -4.12726 2.53257 3.21028 3.42591 3.42885 3.61298 4.38314 4.48813 5.22430 5.28197 5.28911 5.38918 5.44958 5.50932 5.54365 5.60917 5.71032 5.82110 6.02037 6.05083 6.13189 6.15488 6.28628 6.32429 6.39021 6.45477 6.51400 6.56213 6.69062 6.76924 6.85498 6.90706 7.00435 7.09203 7.19702 7.47881 8.00739 8.10252 8.38335 8.68861 8.80854 9.57319 10.98063 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.007726 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.854102 B = 3623.284976 C = 4516.591454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.376 6.376 3 C 0.656 3.344 4 O -0.580 6.580 5 N -0.593 5.593 6 C 0.100 3.900 7 C -0.128 4.128 8 C 0.038 3.962 9 H 0.035 0.965 10 C -0.587 4.587 11 H 0.057 0.943 12 C 0.025 3.975 13 N -0.911 5.911 14 Si 1.063 2.937 15 H -0.288 1.288 16 H -0.287 1.287 17 H -0.283 1.283 18 C 0.161 3.839 19 H 0.077 0.923 20 C -0.116 4.116 21 C -0.095 4.095 22 C -0.142 4.142 23 C -0.140 4.140 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.272 0.728 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -1.463 -2.864 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.290 6.290 3 C 0.410 3.590 4 O -0.470 6.470 5 N -0.332 5.332 6 C -0.023 4.023 7 C -0.167 4.167 8 C 0.019 3.981 9 H 0.053 0.947 10 C -0.625 4.625 11 H 0.075 0.925 12 C -0.180 4.180 13 N -0.547 5.547 14 Si 0.892 3.108 15 H -0.215 1.215 16 H -0.213 1.213 17 H -0.209 1.209 18 C 0.061 3.939 19 H 0.095 0.905 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.200 4.200 23 C -0.197 4.197 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.243 -0.894 -2.228 8.586 hybrid contribution -1.815 -0.411 -0.656 1.973 sum -10.058 -1.304 -2.884 10.544 Atomic orbital electron populations 1.23074 0.75429 1.02802 1.02378 1.86256 1.23361 1.31851 1.87514 1.17688 0.82480 0.81795 0.77005 1.90940 1.64127 1.34822 1.57120 1.47585 1.00972 1.11096 1.73538 1.22456 0.91261 0.88271 1.00266 1.23064 0.93580 0.99229 1.00853 1.19944 0.88521 0.92852 0.96769 0.94739 1.21826 0.97097 1.07665 1.35922 0.92518 1.25701 0.95471 0.99292 0.97536 1.70827 1.40119 1.10510 1.33268 0.83607 0.76226 0.75040 0.75943 1.21486 1.21346 1.20887 1.22014 0.91668 0.82997 0.97213 0.90482 1.21888 1.00064 0.96526 0.96955 1.21079 1.02365 0.93875 0.94014 1.21829 1.00641 1.00204 0.97316 1.21809 0.99372 0.98759 0.99799 0.88496 0.92199 0.92237 0.92296 0.91639 0.90546 0.91346 0.91570 0.92959 0.92162 0.88407 0.93627 0.93095 0.93306 0.91898 0.93432 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.56 101.05 1.07 1.77 16 2 O -0.38 -6.29 10.14 -40.31 -0.41 -6.69 16 3 C 0.66 12.97 8.36 54.06 0.45 13.42 16 4 O -0.58 -12.60 15.31 -19.28 -0.30 -12.90 16 5 N -0.59 -11.84 3.06 -168.75 -0.52 -12.36 16 6 C 0.10 1.83 6.91 -2.53 -0.02 1.81 16 7 C -0.13 -2.71 5.67 -24.58 -0.14 -2.85 16 8 C 0.04 0.87 1.34 -89.94 -0.12 0.75 16 9 H 0.03 0.83 7.73 -51.92 -0.40 0.43 16 10 C -0.59 -14.78 7.19 -34.44 -0.25 -15.02 16 11 H 0.06 1.44 6.54 -52.49 -0.34 1.09 16 12 C 0.02 0.65 5.33 -17.82 -0.10 0.56 16 13 N -0.91 -25.21 13.42 55.43 0.74 -24.47 16 14 Si 1.06 23.83 29.90 -169.99 -5.08 18.75 16 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.16 3.40 2.33 -66.95 -0.16 3.24 16 19 H 0.08 1.77 5.91 -51.93 -0.31 1.46 16 20 C -0.12 -2.25 4.11 -26.73 -0.11 -2.36 16 21 C -0.09 -1.73 2.64 -90.62 -0.24 -1.97 16 22 C -0.14 -2.21 9.19 37.16 0.34 -1.87 16 23 C -0.14 -2.49 9.02 37.16 0.34 -2.15 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 29 H 0.08 1.64 6.46 -51.92 -0.34 1.30 16 30 H 0.07 1.53 8.04 -51.93 -0.42 1.12 16 31 H 0.27 7.34 5.31 -40.82 -0.22 7.12 16 32 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.06 1.21 6.94 -51.93 -0.36 0.85 16 34 H 0.10 2.04 6.29 -51.92 -0.33 1.71 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.22 5.36 -51.93 -0.28 0.94 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -28.81 313.85 -6.19 -34.99 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.43 Total: 2.62 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 1.07 Total: -4.66 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.23 Total: -36.83 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.70 Total: -19.59 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.08 Total: 18.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.81 -6.19 -34.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257732656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.094 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds