Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34627 * 117.00389 * 2 1 4 4 O 1.21514 * 120.00170 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00572 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.62670 * 5.66603 * 5 3 2 7 7 C 1.53185 * 108.77739 * 126.41099 * 6 5 3 8 8 C 1.53041 * 109.31341 * 54.63384 * 7 6 5 9 9 C 1.53033 * 109.53779 * 298.63778 * 8 7 6 10 10 H 1.09003 * 109.49834 * 301.37768 * 9 8 7 11 11 C 1.50707 * 109.50037 * 181.31483 * 9 8 7 12 12 H 1.07992 * 119.99902 * 246.09156 * 11 9 8 13 13 C 1.37873 * 119.99843 * 66.09142 * 11 9 8 14 14 N 1.31515 * 120.00278 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99841 * 179.72710 * 13 11 9 16 16 H 1.48495 * 109.46995 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47078 * 120.00137 * 15 13 11 18 18 H 1.48496 * 109.47119 * 239.99520 * 15 13 11 19 19 C 1.46924 * 120.63289 * 185.68746 * 5 3 2 20 20 H 1.08997 * 109.58670 * 113.79964 * 19 5 3 21 21 C 1.52997 * 109.58722 * 353.37331 * 19 5 3 22 22 C 1.53001 * 109.47106 * 172.84655 * 21 19 5 23 23 C 1.53004 * 109.47155 * 292.83941 * 21 19 5 24 24 H 1.09002 * 109.46943 * 60.00214 * 1 2 3 25 25 H 1.09000 * 109.47549 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47255 * 300.00670 * 1 2 3 27 27 H 1.09007 * 109.59148 * 6.62222 * 6 5 3 28 28 H 1.09003 * 109.58900 * 246.19997 * 6 5 3 29 29 H 1.09000 * 109.50094 * 294.68372 * 7 6 5 30 30 H 1.09006 * 109.50085 * 174.58258 * 7 6 5 31 31 H 1.08994 * 109.46275 * 178.61279 * 8 7 6 32 32 H 1.09008 * 109.44622 * 58.64663 * 8 7 6 33 33 H 0.97004 * 120.00572 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47265 * 52.83976 * 21 19 5 35 35 H 1.08994 * 109.47808 * 69.58672 * 22 21 19 36 36 H 1.09006 * 109.46786 * 189.59367 * 22 21 19 37 37 H 1.09003 * 109.46789 * 309.58299 * 22 21 19 38 38 H 1.09004 * 109.47076 * 57.79212 * 23 21 19 39 39 H 1.09001 * 109.47206 * 177.78786 * 23 21 19 40 40 H 1.09000 * 109.47480 * 297.79291 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2226 0.0529 -0.1237 7 6 5.2069 0.2339 -1.2834 8 6 6.0186 1.5125 -1.0636 9 6 5.0768 2.7183 -1.0368 10 1 4.5267 2.7713 -1.9763 11 6 5.8800 3.9801 -0.8525 12 1 5.7747 4.5599 0.0525 13 6 6.7493 4.3942 -1.8393 14 7 6.8780 3.6878 -2.9412 15 14 7.7393 5.9622 -1.6142 16 1 7.4112 6.5703 -0.2999 17 1 9.1890 5.6437 -1.6637 18 1 7.4054 6.9185 -2.7000 19 6 4.0909 2.5656 0.1258 20 1 4.6320 2.6038 1.0712 21 6 3.0597 3.6947 0.0757 22 6 3.7466 5.0267 0.3838 23 6 2.4355 3.7538 -1.3200 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.5749 -0.8007 -0.3240 28 1 4.7745 -0.1138 0.8013 29 1 4.6552 0.3098 -2.2205 30 1 5.8807 -0.6220 -1.3258 31 1 6.7369 1.6307 -1.8748 32 1 6.5505 1.4460 -0.1144 33 1 7.4893 3.9793 -3.6357 34 1 2.2805 3.5082 0.8146 35 1 4.4038 5.2965 -0.4428 36 1 2.9922 5.8023 0.5164 37 1 4.3329 4.9302 1.2976 38 1 1.9801 2.7918 -1.5554 39 1 1.6730 4.5323 -1.3444 40 1 3.2086 3.9792 -2.0546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257737355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = -62.889720 kcal Electronic energy + Delta-G solvation = -21176.785235 eV Core-core repulsion = 18185.580593 eV Total energy + Delta-G solvation = -2991.204642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07058 -39.55624 -37.43278 -36.00516 -34.76712 -33.05270 -30.59892 -28.66402 -28.14422 -26.93410 -25.73073 -23.68021 -22.33002 -21.34841 -20.29700 -18.70703 -18.18977 -17.61980 -17.31470 -16.55516 -15.93430 -15.69118 -15.24009 -15.14859 -14.93696 -14.41656 -14.30681 -13.81897 -13.61607 -13.25580 -12.98820 -12.92132 -12.80341 -12.66550 -12.36699 -12.16288 -12.06262 -11.75757 -11.70983 -11.55014 -11.32365 -11.20683 -10.88972 -10.56078 -10.34294 -10.03956 -9.30965 -8.00851 -6.04286 1.35486 1.43141 1.48206 1.56521 1.87840 2.50193 3.09688 3.29688 4.07351 4.18118 4.24624 4.27771 4.43581 4.44984 4.49437 4.54811 4.72460 4.78066 4.79469 4.88760 4.97202 5.01926 5.08444 5.12217 5.24035 5.26606 5.36678 5.38779 5.48689 5.59963 5.63411 5.71621 5.77234 5.96108 6.08682 6.17713 6.46763 6.59315 7.01271 7.41813 7.56756 9.06603 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.007853 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.637110 B = 3564.435804 C = 4165.144811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.380 6.380 3 C 0.629 3.371 4 O -0.574 6.574 5 N -0.589 5.589 6 C 0.118 3.882 7 C -0.126 4.126 8 C -0.108 4.108 9 C 0.045 3.955 10 H 0.008 0.992 11 C -0.509 4.509 12 H 0.079 0.921 13 C 0.014 3.986 14 N -0.920 5.920 15 Si 0.938 3.062 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.290 1.290 19 C 0.173 3.827 20 H 0.064 0.936 21 C -0.071 4.071 22 C -0.157 4.157 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.134 0.866 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 -8.123 6.369 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.295 6.295 3 C 0.385 3.615 4 O -0.466 6.466 5 N -0.328 5.328 6 C -0.003 4.003 7 C -0.165 4.165 8 C -0.146 4.146 9 C 0.026 3.974 10 H 0.026 0.974 11 C -0.547 4.547 12 H 0.097 0.903 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.765 3.235 16 H -0.186 1.186 17 H -0.212 1.212 18 H -0.217 1.217 19 C 0.072 3.928 20 H 0.082 0.918 21 C -0.089 4.089 22 C -0.214 4.214 23 C -0.168 4.168 24 H 0.073 0.927 25 H 0.152 0.848 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.249 -7.863 6.221 12.983 hybrid contribution 0.664 1.029 -0.466 1.311 sum -7.586 -6.833 5.754 11.719 Atomic orbital electron populations 1.23391 0.73420 1.05199 1.02202 1.86228 1.25297 1.30801 1.87136 1.18335 0.83666 0.82110 0.77421 1.91005 1.66067 1.33638 1.55870 1.47268 1.01703 1.09964 1.73830 1.21817 0.93633 0.85741 0.99146 1.21903 0.98082 0.99047 0.97423 1.21482 0.98879 0.94147 1.00129 1.19016 0.91924 0.93819 0.92620 0.97354 1.21771 1.21378 1.08085 1.03480 0.90329 1.25560 0.98120 0.99303 0.95362 1.70066 1.38143 1.39912 1.07970 0.85804 0.78631 0.80842 0.78238 1.18583 1.21226 1.21678 1.21514 0.92557 0.79596 0.99118 0.91836 1.21382 0.95490 0.93560 0.98493 1.22416 1.00134 0.96542 1.02319 1.21921 0.97979 1.00560 0.96350 0.92735 0.84817 0.92127 0.88167 0.90087 0.94099 0.89549 0.93035 0.94127 0.93576 0.89873 0.90377 0.93915 0.93418 0.92797 0.94550 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.08 10.56 113.37 1.20 2.27 16 2 O -0.38 -11.05 9.23 -55.36 -0.51 -11.56 16 3 C 0.63 22.48 7.41 129.79 0.96 23.44 16 4 O -0.57 -22.51 9.36 19.80 0.19 -22.32 16 5 N -0.59 -21.44 2.94 -925.26 -2.72 -24.16 16 6 C 0.12 3.59 6.43 86.36 0.56 4.15 16 7 C -0.13 -4.39 6.08 30.67 0.19 -4.21 16 8 C -0.11 -4.74 5.01 30.62 0.15 -4.59 16 9 C 0.05 2.15 1.22 -11.46 -0.01 2.13 16 10 H 0.01 0.46 6.06 -2.39 -0.01 0.45 16 11 C -0.51 -25.91 5.98 25.60 0.15 -25.75 16 12 H 0.08 3.87 4.96 -2.91 -0.01 3.86 16 13 C 0.01 0.77 5.32 84.65 0.45 1.22 16 14 N -0.92 -52.12 11.78 21.45 0.25 -51.87 16 15 Si 0.94 42.67 29.54 68.60 2.03 44.70 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 19 C 0.17 7.13 2.29 44.98 0.10 7.23 16 20 H 0.06 2.59 8.08 -2.39 -0.02 2.57 16 21 C -0.07 -2.92 2.16 -10.79 -0.02 -2.94 16 22 C -0.16 -6.29 7.55 71.98 0.54 -5.75 16 23 C -0.11 -4.83 7.36 71.98 0.53 -4.30 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 2.62 6.97 -2.38 -0.02 2.60 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.05 2.61 6.54 -2.39 -0.02 2.60 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.08 3.45 5.86 -10.11 -0.06 3.39 16 35 H 0.08 3.56 5.07 -2.39 -0.01 3.55 16 36 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.80 7.59 -2.39 -0.02 1.78 16 38 H 0.05 2.38 5.05 -11.88 -0.06 2.32 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.02 1.15 6.34 -2.39 -0.02 1.13 16 Total: -1.00 -60.47 295.66 4.96 -55.51 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.93 Total: 16.79 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 4.80 Total: -7.09 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.47 Total: -76.02 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.33 Total: -33.88 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.47 4.96 -55.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257737355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.384 kcal (2) G-P(sol) polarization free energy of solvation -60.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds