Wall clock time and date at job start Mon Mar 30 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34635 * 116.99828 * 2 1 4 4 O 1.21513 * 120.00372 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63028 * 0.04561 * 5 3 2 7 7 C 1.53199 * 108.77743 * 233.58948 * 6 5 3 8 8 C 1.53041 * 109.30909 * 305.36616 * 7 6 5 9 9 C 1.53070 * 109.66200 * 61.29809 * 8 7 6 10 10 H 1.09006 * 109.62228 * 178.82986 * 9 8 7 11 11 C 1.50692 * 109.39109 * 58.72113 * 9 8 7 12 12 H 1.08001 * 120.00706 * 247.43433 * 11 9 8 13 13 C 1.37883 * 119.99764 * 67.43921 * 11 9 8 14 14 N 1.31508 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99826 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46973 * 89.99903 * 15 13 11 17 17 H 1.48501 * 109.47209 * 209.99471 * 15 13 11 18 18 H 1.48494 * 109.47356 * 329.99866 * 15 13 11 19 19 C 1.46929 * 120.63435 * 180.02562 * 5 3 2 20 20 H 1.09002 * 109.58617 * 246.34356 * 19 5 3 21 21 C 1.53000 * 109.58425 * 6.62566 * 19 5 3 22 22 C 1.53001 * 109.47134 * 60.76233 * 21 19 5 23 23 C 1.52998 * 109.47081 * 180.76428 * 21 19 5 24 24 H 1.09000 * 109.47022 * 300.00235 * 1 2 3 25 25 H 1.09001 * 109.47330 * 60.00353 * 1 2 3 26 26 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.58713 * 353.37200 * 6 5 3 28 28 H 1.08999 * 109.58769 * 113.80149 * 6 5 3 29 29 H 1.08999 * 109.49445 * 65.31004 * 7 6 5 30 30 H 1.08989 * 109.50301 * 185.37988 * 7 6 5 31 31 H 1.08996 * 109.45974 * 181.38635 * 8 7 6 32 32 H 1.09005 * 109.46040 * 301.35669 * 8 7 6 33 33 H 0.96996 * 120.00184 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47190 * 300.76421 * 21 19 5 35 35 H 1.08999 * 109.47234 * 318.14833 * 22 21 19 36 36 H 1.08999 * 109.46977 * 78.15169 * 22 21 19 37 37 H 1.09000 * 109.46853 * 198.15041 * 22 21 19 38 38 H 1.09003 * 109.47179 * 64.79942 * 23 21 19 39 39 H 1.09003 * 109.47276 * 184.79453 * 23 21 19 40 40 H 1.08999 * 109.47409 * 304.79778 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2229 0.0469 -0.0021 7 6 5.2133 0.1120 1.1648 8 6 6.0241 1.4064 1.0688 9 6 5.0846 2.6110 1.1650 10 1 5.6648 3.5325 1.1174 11 6 4.3327 2.5561 2.4698 12 1 3.2667 2.3825 2.4720 13 6 5.0056 2.7276 3.6609 14 7 6.3036 2.9385 3.6584 15 14 4.0734 2.6602 5.2783 16 1 4.0508 1.2622 5.7788 17 1 4.7469 3.5317 6.2745 18 1 2.6816 3.1331 5.0676 19 6 4.0906 2.5719 0.0000 20 1 4.6247 2.7051 -0.9408 21 6 3.0599 3.6902 0.1675 22 6 2.3299 3.5155 1.5007 23 6 3.7701 5.0453 0.1486 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5760 -0.8224 0.1158 28 1 4.7699 -0.0269 -0.9420 29 1 4.6665 0.0944 2.1075 30 1 5.8866 -0.7438 1.1188 31 1 6.7467 1.4436 1.8840 32 1 6.5510 1.4350 0.1150 33 1 6.7771 3.0587 4.4964 34 1 2.3398 3.6461 -0.6496 35 1 2.1020 2.4608 1.6547 36 1 2.9645 3.8724 2.3119 37 1 1.4031 4.0890 1.4853 38 1 4.2187 5.2068 -0.8316 39 1 3.0487 5.8365 0.3528 40 1 4.5489 5.0580 0.9112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257737357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:17 Heat of formation + Delta-G solvation = -19.363755 kcal Electronic energy + Delta-G solvation = -21613.874912 eV Core-core repulsion = 18624.557698 eV Total energy + Delta-G solvation = -2989.317215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64615 -38.08300 -35.87376 -34.24165 -32.91210 -31.15121 -28.80503 -27.37472 -27.05709 -24.80366 -24.17959 -22.05191 -20.70809 -19.72232 -18.65912 -16.97915 -16.28402 -16.08166 -15.80082 -14.69861 -14.31716 -13.93192 -13.78531 -13.66801 -13.19316 -12.76395 -12.44407 -12.09535 -11.90509 -11.76380 -11.64218 -11.56070 -11.06513 -10.93048 -10.62542 -10.56876 -10.40060 -10.06635 -9.86553 -9.79562 -9.47559 -9.23760 -9.10945 -8.77431 -8.23865 -7.90641 -7.63518 -5.93001 -3.84734 2.80868 3.33301 3.41322 3.45879 3.48913 4.48433 4.53092 5.38482 5.39535 5.46530 5.60110 5.69663 5.78480 5.85793 5.99778 6.04617 6.16918 6.25264 6.43125 6.44762 6.54140 6.63230 6.68956 6.83393 6.86115 7.00937 7.09069 7.17951 7.27967 7.34841 7.37212 7.49780 7.73108 7.82035 7.93418 8.13922 8.17195 8.50233 8.99185 9.08973 9.69438 11.16302 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.009872 C = 0.009803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.884384 B = 2835.537845 C = 2855.681475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.382 6.382 3 C 0.634 3.366 4 O -0.559 6.559 5 N -0.566 5.566 6 C 0.118 3.882 7 C -0.121 4.121 8 C -0.107 4.107 9 C 0.036 3.964 10 H 0.049 0.951 11 C -0.512 4.512 12 H 0.096 0.904 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.876 3.124 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.273 1.273 19 C 0.167 3.833 20 H 0.048 0.952 21 C -0.071 4.071 22 C -0.114 4.114 23 C -0.149 4.149 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.017 0.983 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.006 0.994 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 -4.851 -7.206 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.297 6.297 3 C 0.389 3.611 4 O -0.449 6.449 5 N -0.305 5.305 6 C -0.005 4.005 7 C -0.159 4.159 8 C -0.146 4.146 9 C 0.017 3.983 10 H 0.066 0.934 11 C -0.550 4.550 12 H 0.113 0.887 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.705 3.295 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.198 1.198 19 C 0.067 3.933 20 H 0.066 0.934 21 C -0.090 4.090 22 C -0.170 4.170 23 C -0.207 4.207 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.025 0.975 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.516 -4.529 -7.082 10.054 hybrid contribution -0.468 -0.135 0.999 1.111 sum -5.983 -4.664 -6.084 9.724 Atomic orbital electron populations 1.22993 0.75951 1.02423 1.02189 1.86225 1.22972 1.32755 1.87720 1.18123 0.83761 0.81434 0.77797 1.91083 1.65533 1.32727 1.55516 1.46891 1.00971 1.08773 1.73853 1.21652 0.93898 0.86063 0.98873 1.21785 0.97356 0.98224 0.98573 1.21504 0.98913 0.95014 0.99129 1.19182 0.91999 0.95041 0.92091 0.93359 1.22271 0.96784 1.46193 0.89745 0.88667 1.24891 0.94626 0.96193 0.98524 1.69919 1.07118 1.50361 1.26170 0.86832 0.80387 0.77734 0.84586 1.21065 1.21556 1.19814 1.21610 0.93569 0.79424 0.98731 0.93408 1.21349 0.95194 0.92200 1.00207 1.22771 0.96729 1.00228 0.97315 1.21964 1.00782 0.97219 1.00685 0.92286 0.92515 0.88925 0.90578 0.92701 0.90436 0.93418 0.89927 0.96402 0.93413 0.90786 0.92544 0.89845 0.97469 0.94595 0.93822 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -6.55 9.20 -40.31 -0.37 -6.92 16 3 C 0.63 12.54 6.91 54.05 0.37 12.92 16 4 O -0.56 -11.87 9.65 -19.28 -0.19 -12.05 16 5 N -0.57 -11.12 2.55 -170.96 -0.44 -11.55 16 6 C 0.12 2.04 6.45 -3.71 -0.02 2.02 16 7 C -0.12 -2.33 5.85 -26.61 -0.16 -2.49 16 8 C -0.11 -2.32 5.26 -26.67 -0.14 -2.46 16 9 C 0.04 0.82 1.61 -91.64 -0.15 0.67 16 10 H 0.05 1.22 6.66 -51.93 -0.35 0.87 16 11 C -0.51 -12.80 4.01 -34.44 -0.14 -12.94 16 12 H 0.10 2.45 3.34 -57.81 -0.19 2.26 16 13 C 0.06 1.51 5.34 -17.82 -0.10 1.42 16 14 N -0.90 -24.57 11.88 55.43 0.66 -23.91 16 15 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.17 3.45 2.61 -67.60 -0.18 3.27 16 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.07 -1.47 2.17 -90.62 -0.20 -1.67 16 22 C -0.11 -2.58 5.52 37.16 0.21 -2.38 16 23 C -0.15 -2.84 8.92 37.16 0.33 -2.50 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.22 6.93 -51.93 -0.36 0.86 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.70 7.14 -51.93 -0.37 1.33 16 30 H 0.05 0.80 8.14 -51.94 -0.42 0.38 16 31 H 0.08 2.02 6.71 -51.93 -0.35 1.68 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.07 1.58 6.20 -51.93 -0.32 1.26 16 35 H 0.06 1.34 3.46 -51.93 -0.18 1.17 16 36 H 0.08 2.04 5.24 -51.93 -0.27 1.77 16 37 H 0.01 0.14 8.12 -51.93 -0.42 -0.28 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.47 6.36 -51.93 -0.33 1.14 16 LS Contribution 291.06 15.07 4.39 4.39 Total: -1.00 -27.94 291.06 -6.15 -34.09 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.08 Total: 2.21 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 0.90 Total: -2.30 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.22 Total: -35.46 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.56 Total: -18.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.94 -6.15 -34.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257737357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.722 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds