Wall clock time and date at job start Mon Mar 30 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34635 * 116.99828 * 2 1 4 4 O 1.21513 * 120.00372 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63028 * 0.04561 * 5 3 2 7 7 C 1.53199 * 108.77743 * 233.58948 * 6 5 3 8 8 C 1.53041 * 109.30909 * 305.36616 * 7 6 5 9 9 C 1.53070 * 109.66200 * 61.29809 * 8 7 6 10 10 H 1.09006 * 109.62228 * 178.82986 * 9 8 7 11 11 C 1.50692 * 109.39109 * 58.72113 * 9 8 7 12 12 H 1.08001 * 120.00706 * 247.43433 * 11 9 8 13 13 C 1.37883 * 119.99764 * 67.43921 * 11 9 8 14 14 N 1.31508 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99826 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46973 * 89.99903 * 15 13 11 17 17 H 1.48501 * 109.47209 * 209.99471 * 15 13 11 18 18 H 1.48494 * 109.47356 * 329.99866 * 15 13 11 19 19 C 1.46929 * 120.63435 * 180.02562 * 5 3 2 20 20 H 1.09002 * 109.58617 * 246.34356 * 19 5 3 21 21 C 1.53000 * 109.58425 * 6.62566 * 19 5 3 22 22 C 1.53001 * 109.47134 * 60.76233 * 21 19 5 23 23 C 1.52998 * 109.47081 * 180.76428 * 21 19 5 24 24 H 1.09000 * 109.47022 * 300.00235 * 1 2 3 25 25 H 1.09001 * 109.47330 * 60.00353 * 1 2 3 26 26 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.58713 * 353.37200 * 6 5 3 28 28 H 1.08999 * 109.58769 * 113.80149 * 6 5 3 29 29 H 1.08999 * 109.49445 * 65.31004 * 7 6 5 30 30 H 1.08989 * 109.50301 * 185.37988 * 7 6 5 31 31 H 1.08996 * 109.45974 * 181.38635 * 8 7 6 32 32 H 1.09005 * 109.46040 * 301.35669 * 8 7 6 33 33 H 0.96996 * 120.00184 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47190 * 300.76421 * 21 19 5 35 35 H 1.08999 * 109.47234 * 318.14833 * 22 21 19 36 36 H 1.08999 * 109.46977 * 78.15169 * 22 21 19 37 37 H 1.09000 * 109.46853 * 198.15041 * 22 21 19 38 38 H 1.09003 * 109.47179 * 64.79942 * 23 21 19 39 39 H 1.09003 * 109.47276 * 184.79453 * 23 21 19 40 40 H 1.08999 * 109.47409 * 304.79778 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2229 0.0469 -0.0021 7 6 5.2133 0.1120 1.1648 8 6 6.0241 1.4064 1.0688 9 6 5.0846 2.6110 1.1650 10 1 5.6648 3.5325 1.1174 11 6 4.3327 2.5561 2.4698 12 1 3.2667 2.3825 2.4720 13 6 5.0056 2.7276 3.6609 14 7 6.3036 2.9385 3.6584 15 14 4.0734 2.6602 5.2783 16 1 4.0508 1.2622 5.7788 17 1 4.7469 3.5317 6.2745 18 1 2.6816 3.1331 5.0676 19 6 4.0906 2.5719 0.0000 20 1 4.6247 2.7051 -0.9408 21 6 3.0599 3.6902 0.1675 22 6 2.3299 3.5155 1.5007 23 6 3.7701 5.0453 0.1486 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5760 -0.8224 0.1158 28 1 4.7699 -0.0269 -0.9420 29 1 4.6665 0.0944 2.1075 30 1 5.8866 -0.7438 1.1188 31 1 6.7467 1.4436 1.8840 32 1 6.5510 1.4350 0.1150 33 1 6.7771 3.0587 4.4964 34 1 2.3398 3.6461 -0.6496 35 1 2.1020 2.4608 1.6547 36 1 2.9645 3.8724 2.3119 37 1 1.4031 4.0890 1.4853 38 1 4.2187 5.2068 -0.8316 39 1 3.0487 5.8365 0.3528 40 1 4.5489 5.0580 0.9112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257737357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:16 Heat of formation + Delta-G solvation = -35.049027 kcal Electronic energy + Delta-G solvation = -21614.555077 eV Core-core repulsion = 18624.557698 eV Total energy + Delta-G solvation = -2989.997379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.19049 -39.58881 -37.38264 -35.84132 -34.70919 -32.91417 -30.45244 -28.94776 -28.47906 -26.56138 -25.70084 -23.76691 -22.23182 -21.37780 -20.29085 -18.45992 -18.01443 -17.52706 -17.48229 -16.53600 -15.93905 -15.56525 -15.26074 -15.05212 -14.86864 -14.30961 -14.05360 -13.69270 -13.60887 -13.40164 -13.22133 -12.88251 -12.82476 -12.72499 -12.48834 -12.11607 -11.98973 -11.76184 -11.51008 -11.45880 -11.15490 -11.07530 -10.78386 -10.46388 -10.19344 -9.76353 -9.25428 -7.96071 -5.88793 1.37553 1.42323 1.42920 1.49284 1.99089 2.50947 3.15820 3.36097 4.11846 4.20623 4.33102 4.37648 4.44458 4.45876 4.53792 4.60780 4.72150 4.76980 4.77973 4.90864 4.98113 5.05065 5.11700 5.17387 5.34915 5.35864 5.38877 5.49681 5.52301 5.62772 5.70949 5.77515 5.84358 5.97993 6.12848 6.21941 6.55087 6.66112 7.09101 7.50108 7.65772 9.12442 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.009872 C = 0.009803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.884384 B = 2835.537845 C = 2855.681475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.383 6.383 3 C 0.631 3.369 4 O -0.580 6.580 5 N -0.574 5.574 6 C 0.120 3.880 7 C -0.114 4.114 8 C -0.104 4.104 9 C 0.036 3.964 10 H 0.021 0.979 11 C -0.495 4.495 12 H 0.089 0.911 13 C 0.014 3.986 14 N -0.922 5.922 15 Si 0.918 3.082 16 H -0.283 1.283 17 H -0.293 1.293 18 H -0.275 1.275 19 C 0.171 3.829 20 H 0.067 0.933 21 C -0.068 4.068 22 C -0.099 4.099 23 C -0.142 4.142 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.133 0.867 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.251 0.749 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.005 0.995 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -6.108 -8.789 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.297 6.297 3 C 0.386 3.614 4 O -0.472 6.472 5 N -0.312 5.312 6 C -0.001 4.001 7 C -0.153 4.153 8 C -0.143 4.143 9 C 0.017 3.983 10 H 0.039 0.961 11 C -0.533 4.533 12 H 0.107 0.893 13 C -0.182 4.182 14 N -0.564 5.564 15 Si 0.746 3.254 16 H -0.210 1.210 17 H -0.219 1.219 18 H -0.200 1.200 19 C 0.070 3.930 20 H 0.085 0.915 21 C -0.086 4.086 22 C -0.155 4.155 23 C -0.200 4.200 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.151 0.849 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.398 -5.812 -8.665 12.239 hybrid contribution -0.280 0.233 1.462 1.506 sum -6.678 -5.579 -7.203 11.296 Atomic orbital electron populations 1.23353 0.73682 1.05055 1.02023 1.86220 1.25109 1.31097 1.87277 1.18232 0.83789 0.81968 0.77367 1.91053 1.66004 1.33702 1.56422 1.46950 1.01404 1.09020 1.73838 1.21783 0.93602 0.85682 0.99074 1.21682 0.97680 0.97874 0.98019 1.21385 0.98337 0.95692 0.98853 1.19099 0.92446 0.94544 0.92245 0.96075 1.22430 0.96410 1.43840 0.90660 0.89339 1.25372 0.95133 0.97078 1.00661 1.70025 1.07974 1.52322 1.26118 0.86168 0.79323 0.77453 0.82416 1.20954 1.21933 1.20003 1.21443 0.93093 0.80169 0.98294 0.91547 1.21299 0.95219 0.93191 0.98902 1.22557 0.96293 0.99096 0.97599 1.21882 1.00184 0.96711 1.01226 0.93224 0.91960 0.84919 0.88905 0.89887 0.93682 0.90703 0.93301 0.94306 0.93956 0.90666 0.93750 0.92439 0.97564 0.92220 0.92942 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.24 10.56 113.37 1.20 2.43 16 2 O -0.38 -12.11 9.20 -55.44 -0.51 -12.62 16 3 C 0.63 23.73 6.91 129.79 0.90 24.63 16 4 O -0.58 -23.83 9.65 19.80 0.19 -23.63 16 5 N -0.57 -21.27 2.55 -925.22 -2.36 -23.63 16 6 C 0.12 3.79 6.45 86.36 0.56 4.34 16 7 C -0.11 -4.18 5.85 30.67 0.18 -4.00 16 8 C -0.10 -4.43 5.26 30.63 0.16 -4.27 16 9 C 0.04 1.63 1.61 -11.46 -0.02 1.61 16 10 H 0.02 1.09 6.66 -2.38 -0.02 1.07 16 11 C -0.50 -25.05 4.01 25.60 0.10 -24.94 16 12 H 0.09 4.60 3.34 -7.91 -0.03 4.57 16 13 C 0.01 0.75 5.34 84.66 0.45 1.21 16 14 N -0.92 -51.90 11.88 21.45 0.25 -51.65 16 15 Si 0.92 44.02 29.54 68.60 2.03 46.05 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 18 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 19 C 0.17 6.79 2.61 44.97 0.12 6.91 16 20 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 21 C -0.07 -2.73 2.17 -10.79 -0.02 -2.75 16 22 C -0.10 -4.47 5.52 71.98 0.40 -4.07 16 23 C -0.14 -5.28 8.92 71.98 0.64 -4.64 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.64 6.93 -2.39 -0.02 2.62 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.04 1.93 7.14 -2.39 -0.02 1.92 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 2.41 6.71 -2.39 -0.02 2.39 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.08 3.08 6.20 -2.39 -0.01 3.06 16 35 H 0.04 2.10 3.46 -2.45 -0.01 2.09 16 36 H 0.06 2.85 5.24 -2.39 -0.01 2.84 16 37 H 0.01 0.24 8.12 -2.39 -0.02 0.22 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.91 6.36 -2.39 -0.02 1.90 16 Total: -1.00 -60.47 291.06 5.28 -55.19 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.01 Total: 13.83 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.66 Total: -3.55 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -2.10 Total: -75.27 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.32 Total: -36.25 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -60.47 5.28 -55.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257737357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.144 kcal (2) G-P(sol) polarization free energy of solvation -60.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds