Wall clock time and date at job start Mon Mar 30 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45208 * 109.46513 * 2 1 4 4 C 1.34632 * 116.99497 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00754 * 0.27100 * 4 3 2 6 6 N 1.34784 * 119.99600 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99893 * 359.97438 * 6 4 3 8 8 C 1.46499 * 119.99971 * 179.97438 * 6 4 3 9 9 C 1.53002 * 109.47216 * 59.99659 * 8 6 4 10 10 C 1.52992 * 109.47454 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47194 * 60.00149 * 10 9 8 12 12 C 1.50700 * 109.47219 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99750 * 120.00546 * 12 11 10 14 14 C 1.37869 * 120.00102 * 299.99864 * 12 11 10 15 15 N 1.31519 * 120.00062 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00371 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46971 * 60.00093 * 16 14 12 18 18 H 1.48492 * 109.47470 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47080 * 300.00296 * 16 14 12 20 20 C 1.53005 * 109.47295 * 300.00091 * 11 10 9 21 21 C 1.53003 * 109.47078 * 300.00178 * 8 6 4 22 22 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47350 * 299.99691 * 1 2 3 24 24 H 1.08998 * 109.47261 * 60.00003 * 1 2 3 25 25 H 1.09003 * 109.47196 * 240.00592 * 2 1 3 26 26 H 1.08995 * 109.47536 * 119.99552 * 2 1 3 27 27 H 1.08996 * 109.47008 * 90.00348 * 7 6 4 28 28 H 1.08997 * 109.46865 * 210.00034 * 7 6 4 29 29 H 1.08998 * 109.47058 * 329.99547 * 7 6 4 30 30 H 1.08996 * 109.47576 * 179.97438 * 8 6 4 31 31 H 1.08998 * 109.47251 * 300.00062 * 9 8 6 32 32 H 1.09002 * 109.46768 * 59.99877 * 9 8 6 33 33 H 1.09006 * 109.47559 * 300.00248 * 10 9 8 34 34 H 1.08995 * 109.47858 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47094 * 60.00195 * 11 10 9 36 36 H 0.96995 * 119.99942 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47134 * 300.00079 * 20 11 10 38 38 H 1.08990 * 109.47185 * 179.97438 * 20 11 10 39 39 H 1.09000 * 109.47321 * 299.99647 * 21 8 6 40 40 H 1.08998 * 109.47453 * 59.99899 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3487 1.5455 -0.0005 5 8 4.0890 0.5820 -0.0060 6 7 3.8637 2.7911 0.0000 7 6 2.9712 3.9528 0.0005 8 6 5.3161 2.9831 -0.0001 9 6 5.9162 2.3354 -1.2496 10 6 7.4330 2.5354 -1.2493 11 6 8.0328 1.8863 -0.0004 12 6 9.5268 2.0839 0.0002 13 1 10.0006 2.6176 0.8108 14 6 10.2887 1.5831 -1.0340 15 7 9.7117 0.9335 -2.0213 16 14 12.1408 1.8274 -1.0330 17 1 12.7225 1.1968 0.1792 18 1 12.7235 1.1998 -2.2461 19 1 12.4485 3.2802 -1.0314 20 6 7.4328 2.5340 1.2492 21 6 5.9163 2.3344 1.2489 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5137 0.8900 27 1 2.7500 4.2405 1.0283 28 1 3.4556 4.7833 -0.5130 29 1 2.0441 3.6989 -0.5134 30 1 5.5416 4.0495 -0.0001 31 1 5.6907 1.2690 -1.2500 32 1 5.4885 2.7975 -2.1394 33 1 7.6589 3.6018 -1.2487 34 1 7.8605 2.0744 -2.1397 35 1 7.8069 0.8200 -0.0010 36 1 10.2478 0.5816 -2.7490 37 1 7.6586 3.6003 1.2499 38 1 7.8597 2.0713 2.1389 39 1 5.4889 2.7958 2.1391 40 1 5.6909 1.2680 1.2485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259022184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:36 Heat of formation + Delta-G solvation = -97.581655 kcal Electronic energy + Delta-G solvation = -19960.556397 eV Core-core repulsion = 16967.847400 eV Total energy + Delta-G solvation = -2992.708997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44692 -38.07606 -35.97804 -35.01147 -32.49671 -31.56304 -29.72636 -29.04272 -26.47180 -24.83646 -23.18470 -21.73549 -21.51310 -19.99090 -18.91925 -17.36811 -16.52702 -16.44542 -16.20556 -14.97971 -14.61421 -14.46601 -13.72870 -13.50281 -13.26641 -12.90379 -12.82868 -12.64098 -12.46574 -12.08751 -11.98670 -11.62960 -11.60828 -11.28550 -11.08105 -10.79002 -10.60317 -10.47241 -10.38235 -9.99903 -9.93514 -9.71856 -9.19684 -8.92510 -8.63957 -8.31653 -8.17297 -5.88246 -3.94750 2.35598 3.11607 3.37181 3.41854 3.44279 4.02324 4.51195 4.87842 4.92332 5.15187 5.23759 5.33459 5.41034 5.42527 5.53271 5.66869 5.69946 5.74431 5.81704 5.86283 6.13924 6.26267 6.39692 6.48299 6.51490 6.59624 6.82061 6.85916 6.88943 7.12798 7.25341 7.39744 7.57979 7.70413 7.84228 8.15473 8.26145 8.56455 8.60515 9.09751 9.69276 11.17178 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039201 B = 0.004791 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.089374 B = 5842.415688 C = 6102.738697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 O -0.378 6.378 4 C 0.643 3.357 5 O -0.555 6.555 6 N -0.596 5.596 7 C 0.085 3.915 8 C 0.169 3.831 9 C -0.134 4.134 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.513 4.513 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.103 4.103 21 C -0.132 4.132 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.094 0.906 35 H 0.028 0.972 36 H 0.259 0.741 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 3.500 3.137 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.006 3.994 3 O -0.293 6.293 4 C 0.397 3.603 5 O -0.443 6.443 6 N -0.336 5.336 7 C -0.058 4.058 8 C 0.068 3.932 9 C -0.172 4.172 10 C -0.141 4.141 11 C 0.029 3.971 12 C -0.551 4.551 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.141 4.141 21 C -0.171 4.171 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.981 3.062 2.961 17.507 hybrid contribution 0.969 0.138 -0.061 0.981 sum -16.012 3.199 2.900 16.584 Atomic orbital electron populations 1.21806 0.92952 1.02800 1.03226 1.22868 0.94405 0.79341 1.02802 1.86207 1.23011 1.32648 1.87401 1.18116 0.80714 0.84495 0.76953 1.91003 1.59059 1.39453 1.54737 1.47081 1.07669 1.02813 1.76086 1.21725 0.94210 0.88260 1.01601 1.21323 0.74208 0.99960 0.97681 1.22099 0.98898 1.02177 0.94009 1.21568 0.89693 0.98985 1.03902 1.18662 0.93867 0.95544 0.88990 1.21207 0.92036 1.35263 1.06613 0.92892 1.24970 0.98148 0.95180 0.95707 1.69882 1.35091 1.37293 1.10591 0.86723 0.86108 0.78244 0.77257 1.20393 1.21405 1.20408 1.21569 0.91763 1.00086 1.00677 1.22002 0.97638 1.02525 0.94908 0.90245 0.91688 0.91665 0.91252 0.91328 0.92947 0.91002 0.90951 0.89567 0.90333 0.94214 0.95003 0.88815 0.95372 0.93094 0.93574 0.93229 0.93943 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.08 0.95 6.19 37.16 0.23 1.18 16 3 O -0.38 -5.45 9.05 -40.30 -0.36 -5.82 16 4 C 0.64 11.21 7.82 54.06 0.42 11.64 16 5 O -0.55 -11.58 12.34 -19.28 -0.24 -11.81 16 6 N -0.60 -9.47 2.82 -179.74 -0.51 -9.98 16 7 C 0.09 0.96 10.41 59.85 0.62 1.59 16 8 C 0.17 3.02 2.55 -67.93 -0.17 2.85 16 9 C -0.13 -2.79 5.13 -26.73 -0.14 -2.93 16 10 C -0.10 -2.49 4.98 -26.74 -0.13 -2.62 16 11 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 12 C -0.51 -14.39 8.56 -34.44 -0.29 -14.69 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -26.08 11.32 55.43 0.63 -25.46 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.10 -2.22 5.14 -26.75 -0.14 -2.36 16 21 C -0.13 -2.56 5.13 -26.75 -0.14 -2.69 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 29 H 0.07 0.75 7.37 -51.93 -0.38 0.37 16 30 H 0.09 1.40 7.79 -51.93 -0.40 0.99 16 31 H 0.08 1.85 6.16 -51.93 -0.32 1.53 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.74 6.17 -51.93 -0.32 1.42 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -31.40 315.22 -7.16 -38.56 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.77 Total: -0.70 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 0.36 Total: -6.19 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.12 Total: -35.43 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.60 Total: -17.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.40 -7.16 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259022184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.018 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds