Wall clock time and date at job start Mon Mar 30 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45208 * 109.46513 * 2 1 4 4 C 1.34632 * 116.99497 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00754 * 0.27100 * 4 3 2 6 6 N 1.34784 * 119.99600 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99893 * 359.97438 * 6 4 3 8 8 C 1.46499 * 119.99971 * 179.97438 * 6 4 3 9 9 C 1.53002 * 109.47216 * 59.99659 * 8 6 4 10 10 C 1.52992 * 109.47454 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47194 * 60.00149 * 10 9 8 12 12 C 1.50700 * 109.47219 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99750 * 120.00546 * 12 11 10 14 14 C 1.37869 * 120.00102 * 299.99864 * 12 11 10 15 15 N 1.31519 * 120.00062 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00371 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46971 * 60.00093 * 16 14 12 18 18 H 1.48492 * 109.47470 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47080 * 300.00296 * 16 14 12 20 20 C 1.53005 * 109.47295 * 300.00091 * 11 10 9 21 21 C 1.53003 * 109.47078 * 300.00178 * 8 6 4 22 22 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47350 * 299.99691 * 1 2 3 24 24 H 1.08998 * 109.47261 * 60.00003 * 1 2 3 25 25 H 1.09003 * 109.47196 * 240.00592 * 2 1 3 26 26 H 1.08995 * 109.47536 * 119.99552 * 2 1 3 27 27 H 1.08996 * 109.47008 * 90.00348 * 7 6 4 28 28 H 1.08997 * 109.46865 * 210.00034 * 7 6 4 29 29 H 1.08998 * 109.47058 * 329.99547 * 7 6 4 30 30 H 1.08996 * 109.47576 * 179.97438 * 8 6 4 31 31 H 1.08998 * 109.47251 * 300.00062 * 9 8 6 32 32 H 1.09002 * 109.46768 * 59.99877 * 9 8 6 33 33 H 1.09006 * 109.47559 * 300.00248 * 10 9 8 34 34 H 1.08995 * 109.47858 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47094 * 60.00195 * 11 10 9 36 36 H 0.96995 * 119.99942 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47134 * 300.00079 * 20 11 10 38 38 H 1.08990 * 109.47185 * 179.97438 * 20 11 10 39 39 H 1.09000 * 109.47321 * 299.99647 * 21 8 6 40 40 H 1.08998 * 109.47453 * 59.99899 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3487 1.5455 -0.0005 5 8 4.0890 0.5820 -0.0060 6 7 3.8637 2.7911 0.0000 7 6 2.9712 3.9528 0.0005 8 6 5.3161 2.9831 -0.0001 9 6 5.9162 2.3354 -1.2496 10 6 7.4330 2.5354 -1.2493 11 6 8.0328 1.8863 -0.0004 12 6 9.5268 2.0839 0.0002 13 1 10.0006 2.6176 0.8108 14 6 10.2887 1.5831 -1.0340 15 7 9.7117 0.9335 -2.0213 16 14 12.1408 1.8274 -1.0330 17 1 12.7225 1.1968 0.1792 18 1 12.7235 1.1998 -2.2461 19 1 12.4485 3.2802 -1.0314 20 6 7.4328 2.5340 1.2492 21 6 5.9163 2.3344 1.2489 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5137 0.8900 27 1 2.7500 4.2405 1.0283 28 1 3.4556 4.7833 -0.5130 29 1 2.0441 3.6989 -0.5134 30 1 5.5416 4.0495 -0.0001 31 1 5.6907 1.2690 -1.2500 32 1 5.4885 2.7975 -2.1394 33 1 7.6589 3.6018 -1.2487 34 1 7.8605 2.0744 -2.1397 35 1 7.8069 0.8200 -0.0010 36 1 10.2478 0.5816 -2.7490 37 1 7.6586 3.6003 1.2499 38 1 7.8597 2.0713 2.1389 39 1 5.4889 2.7958 2.1391 40 1 5.6909 1.2680 1.2485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259022184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:36 Heat of formation + Delta-G solvation = -116.320320 kcal Electronic energy + Delta-G solvation = -19961.368966 eV Core-core repulsion = 16967.847400 eV Total energy + Delta-G solvation = -2993.521567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76363 -39.54340 -37.44046 -36.44511 -34.43608 -32.51054 -31.46564 -30.77640 -27.62366 -26.64952 -24.33412 -23.31708 -23.10485 -21.37516 -20.68984 -18.66282 -18.37873 -17.77546 -17.67949 -16.59552 -16.20384 -15.58598 -15.27184 -15.01276 -14.74674 -14.42426 -14.11136 -13.91746 -13.54821 -13.45143 -13.32089 -12.99578 -12.91935 -12.86714 -12.63182 -12.50667 -12.40396 -12.16596 -11.85897 -11.78204 -11.48044 -11.41967 -10.95081 -10.77443 -10.62148 -10.36035 -9.65990 -8.04174 -6.19764 1.16631 1.42476 1.44446 1.51986 1.78192 2.45607 2.92805 3.21650 3.85776 4.01779 4.04376 4.12207 4.23976 4.38190 4.39136 4.52596 4.63679 4.71174 4.73967 4.75926 4.80439 4.88999 4.94548 4.95300 4.99647 5.14048 5.16637 5.25168 5.37920 5.40789 5.52609 5.59159 5.67939 5.70653 6.05554 6.23031 6.38252 6.43557 6.93973 7.30597 7.48633 8.99769 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039201 B = 0.004791 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.089374 B = 5842.415688 C = 6102.738697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 O -0.369 6.369 4 C 0.637 3.363 5 O -0.600 6.600 6 N -0.594 5.594 7 C 0.080 3.920 8 C 0.176 3.824 9 C -0.123 4.123 10 C -0.093 4.093 11 C 0.044 3.956 12 C -0.534 4.534 13 H 0.056 0.944 14 C 0.009 3.991 15 N -0.920 5.920 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.094 4.094 21 C -0.124 4.124 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.055 0.945 35 H -0.023 1.023 36 H 0.259 0.741 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.404 5.704 3.889 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 O -0.283 6.283 4 C 0.392 3.608 5 O -0.491 6.491 6 N -0.333 5.333 7 C -0.062 4.062 8 C 0.075 3.925 9 C -0.161 4.161 10 C -0.132 4.132 11 C 0.026 3.974 12 C -0.572 4.572 13 H 0.074 0.926 14 C -0.189 4.189 15 N -0.560 5.560 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.133 4.133 21 C -0.162 4.162 22 H 0.119 0.881 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.074 0.926 35 H -0.005 1.005 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.232 5.296 3.725 19.348 hybrid contribution 1.293 -0.614 -0.302 1.463 sum -16.939 4.683 3.424 17.905 Atomic orbital electron populations 1.21807 0.89524 1.04464 1.03865 1.23190 0.96938 0.78144 1.02059 1.86228 1.21065 1.34098 1.86901 1.18399 0.81373 0.84562 0.76507 1.90994 1.60278 1.41142 1.56640 1.47066 1.07324 1.03661 1.75276 1.22040 0.93852 0.86907 1.03360 1.21116 0.75505 1.00967 0.94922 1.21892 0.96883 1.00597 0.96758 1.21326 0.91817 0.98734 1.01335 1.18623 0.93628 0.93126 0.92029 1.21614 0.93486 1.35395 1.06744 0.92572 1.25809 1.02948 0.94847 0.95305 1.70062 1.36735 1.38042 1.11141 0.85654 0.80286 0.78700 0.77253 1.19872 1.21212 1.19107 1.21420 0.93257 1.00482 0.98095 1.21864 0.96110 1.01114 0.97097 0.88060 0.90896 0.91080 0.92312 0.91979 0.91048 0.88860 0.89991 0.86303 0.93808 0.92627 0.93918 0.92622 1.00459 0.93236 0.91705 0.93698 0.90932 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.07 1.64 6.19 71.98 0.45 2.09 16 3 O -0.37 -10.23 9.05 -55.42 -0.50 -10.73 16 4 C 0.64 21.94 7.82 129.79 1.01 22.95 16 5 O -0.60 -25.96 12.34 19.81 0.24 -25.72 16 6 N -0.59 -17.61 2.82 -952.96 -2.69 -20.30 16 7 C 0.08 1.49 10.41 127.77 1.33 2.82 16 8 C 0.18 6.00 2.55 44.99 0.11 6.12 16 9 C -0.12 -5.18 5.13 30.59 0.16 -5.02 16 10 C -0.09 -4.61 4.98 30.59 0.15 -4.46 16 11 C 0.04 2.36 2.10 -11.54 -0.02 2.34 16 12 C -0.53 -30.50 8.56 25.60 0.22 -30.28 16 13 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 14 C 0.01 0.52 5.30 84.65 0.45 0.97 16 15 N -0.92 -55.86 11.32 21.45 0.24 -55.62 16 16 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.09 -4.04 5.14 30.58 0.16 -3.88 16 21 C -0.12 -4.66 5.13 30.58 0.16 -4.50 16 22 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.38 7.92 -2.39 -0.02 1.36 16 29 H 0.08 1.40 7.37 -2.39 -0.02 1.39 16 30 H 0.12 3.36 7.79 -2.39 -0.02 3.34 16 31 H 0.04 2.16 6.16 -2.39 -0.01 2.14 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 35 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 2.16 6.17 -2.39 -0.01 2.15 16 Total: -1.00 -71.48 315.22 5.23 -66.25 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.00 Total: 11.38 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.91 Total: -12.06 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.45 Total: -75.92 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.26 Total: -36.45 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.48 5.23 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259022184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.073 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds