Wall clock time and date at job start Mon Mar 30 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48496 * 109.47092 * 94.92813 * 3 2 1 5 5 H 1.48505 * 109.47088 * 214.92691 * 3 2 1 6 6 H 1.48502 * 109.47122 * 334.92485 * 3 2 1 7 7 C 1.37884 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 359.22692 * 7 2 1 9 9 C 1.50693 * 119.99584 * 179.22317 * 7 2 1 10 10 H 1.09002 * 109.95253 * 25.12587 * 9 7 2 11 11 C 1.55177 * 109.96144 * 263.87372 * 9 7 2 12 12 S 1.83544 * 102.21524 * 198.76279 * 11 9 7 13 13 C 1.82729 * 97.34819 * 22.84844 * 12 11 9 14 14 C 1.53762 * 105.04723 * 2.16178 * 13 12 11 15 15 C 1.52382 * 109.88827 * 243.38377 * 13 12 11 16 16 C 1.53095 * 109.56969 * 296.64528 * 15 13 12 17 17 C 1.53001 * 109.40294 * 300.98275 * 16 15 13 18 18 C 1.53004 * 109.54319 * 60.52756 * 17 16 15 19 19 H 1.08996 * 109.47893 * 59.46786 * 18 17 16 20 20 C 1.53004 * 109.48217 * 179.50584 * 18 17 16 21 21 N 1.46901 * 109.46813 * 294.99999 * 20 18 17 22 22 C 1.52368 * 109.91401 * 120.98788 * 13 12 11 23 23 H 0.96991 * 119.99928 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.85930 * 316.94466 * 11 9 7 25 25 H 1.09007 * 110.85173 * 80.58396 * 11 9 7 26 26 H 1.09004 * 109.61828 * 212.44609 * 14 13 12 27 27 H 1.09005 * 109.61943 * 92.25397 * 14 13 12 28 28 H 1.08999 * 109.45145 * 56.68066 * 15 13 12 29 29 H 1.09001 * 109.45198 * 176.63405 * 15 13 12 30 30 H 1.08999 * 109.48469 * 60.96599 * 16 15 13 31 31 H 1.09005 * 109.48295 * 181.00446 * 16 15 13 32 32 H 1.09003 * 109.46127 * 180.54970 * 17 16 15 33 33 H 1.09005 * 109.46347 * 300.51518 * 17 16 15 34 34 H 1.09002 * 109.46966 * 54.99621 * 20 18 17 35 35 H 1.08997 * 109.46936 * 174.99677 * 20 18 17 36 36 H 1.00901 * 110.99466 * 179.97438 * 21 20 18 37 37 H 1.00903 * 111.00125 * 303.94857 * 21 20 18 38 38 H 1.09002 * 109.45181 * 183.38684 * 22 13 12 39 39 H 1.08991 * 109.45336 * 303.32736 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6008 1.9863 1.3949 5 1 3.4908 1.4725 -0.8016 6 1 1.3984 2.6805 -0.5934 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0136 9 6 3.5114 -1.1941 -0.0172 10 1 3.8884 -0.2633 0.4068 11 6 4.0241 -1.3602 -1.4723 12 16 5.7564 -1.9090 -1.2135 13 6 5.5409 -2.5748 0.4745 14 6 4.0465 -2.3928 0.7876 15 6 6.3908 -1.7794 1.4579 16 6 7.8720 -1.9497 1.1101 17 6 8.2409 -3.4333 1.1704 18 6 7.3979 -4.2119 0.1584 19 1 7.5832 -3.8246 -0.8434 20 6 7.7767 -5.6934 0.2111 21 7 9.1673 -5.8593 -0.2322 22 6 5.9144 -4.0517 0.5014 23 1 -0.4849 0.8400 0.0004 24 1 3.4509 -2.1216 -2.0013 25 1 3.9937 -0.4098 -2.0053 26 1 3.9161 -2.2056 1.8535 27 1 3.5015 -3.2943 0.5075 28 1 6.1228 -0.7245 1.3987 29 1 6.2115 -2.1433 2.4696 30 1 8.0554 -1.5699 0.1051 31 1 8.4794 -1.3947 1.8251 32 1 9.2977 -3.5547 0.9325 33 1 8.0484 -3.8150 2.1731 34 1 7.6752 -6.0581 1.2333 35 1 7.1161 -6.2608 -0.4444 36 1 9.4418 -6.8299 -0.2060 37 1 9.3022 -5.4698 -1.1532 38 1 5.7262 -4.4557 1.4962 39 1 5.3125 -4.5917 -0.2293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259314015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:29 Heat of formation + Delta-G solvation = -38.171042 kcal Electronic energy + Delta-G solvation = -17713.862912 eV Core-core repulsion = 15166.483024 eV Total energy + Delta-G solvation = -2547.379889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.98138 -35.83298 -34.13003 -32.18165 -30.62237 -29.97226 -25.59216 -25.25022 -24.54715 -21.87566 -20.79520 -19.75711 -19.11526 -17.12938 -15.95202 -15.72728 -14.70658 -14.61452 -14.45816 -14.26489 -13.94869 -13.67702 -12.93677 -12.71983 -12.58860 -12.41065 -12.00916 -11.81042 -11.61452 -11.07662 -10.95118 -10.79968 -10.77575 -10.58877 -10.40043 -10.25573 -9.96971 -9.75179 -9.52075 -9.31375 -8.90615 -8.77073 -8.62975 -7.05308 -6.20855 -4.21631 2.56600 3.15306 3.24054 3.31076 3.34241 4.31430 4.43480 4.81009 4.90895 4.99003 5.11068 5.29042 5.41873 5.52418 5.54895 5.68092 5.74627 5.77203 5.85237 5.94126 5.96522 6.07226 6.15494 6.22398 6.30538 6.41043 6.43698 6.48802 6.51775 6.57575 6.64060 6.67941 7.00249 7.02091 7.16136 7.29877 7.56193 8.36896 8.83119 9.40790 10.91539 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.005964 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.225899 B = 4693.509239 C = 4857.259762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.262 1.262 6 H -0.287 1.287 7 C -0.509 4.509 8 H 0.076 0.924 9 C 0.017 3.983 10 H 0.043 0.957 11 C -0.054 4.054 12 S -0.344 6.344 13 C -0.001 4.001 14 C -0.108 4.108 15 C -0.096 4.096 16 C -0.122 4.122 17 C -0.101 4.101 18 C -0.086 4.086 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.850 5.850 22 C -0.088 4.088 23 H 0.266 0.734 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.337 0.663 37 H 0.340 0.660 38 H 0.066 0.934 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.953 -7.712 1.291 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.214 1.214 7 C -0.548 4.548 8 H 0.094 0.906 9 C -0.004 4.004 10 H 0.061 0.939 11 C -0.202 4.202 12 S -0.116 6.116 13 C -0.111 4.111 14 C -0.146 4.146 15 C -0.136 4.136 16 C -0.160 4.160 17 C -0.139 4.139 18 C -0.105 4.105 19 H 0.096 0.904 20 C -0.064 4.064 21 N -0.379 5.379 22 C -0.128 4.128 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.931 -7.076 1.178 17.471 hybrid contribution -1.194 0.318 -0.157 1.246 sum 14.736 -6.757 1.022 16.244 Atomic orbital electron populations 1.69888 1.06334 1.27289 1.49518 1.25082 0.94732 0.99085 0.93918 0.86895 0.80352 0.83549 0.79072 1.19964 1.18674 1.21360 1.20863 0.87809 0.94709 1.51450 0.90580 1.20100 0.97320 0.94508 0.88450 0.93853 1.24969 0.88821 1.02555 1.03857 1.86897 1.21844 1.80245 1.22582 1.22859 0.99075 0.96470 0.92665 1.22393 0.90019 1.00792 1.01419 1.21536 0.94383 1.00188 0.97443 1.21623 0.95741 0.96531 1.02097 1.21441 0.99737 0.94384 0.98341 1.21221 0.94681 0.93964 1.00595 0.90380 1.21840 0.88078 0.96531 0.99991 1.58714 1.23191 1.22797 1.33190 1.21507 0.95554 0.94103 1.01606 0.92391 0.90008 0.90011 0.91138 0.91513 0.91339 0.91747 0.91155 0.92430 0.91354 0.92769 0.91316 0.95655 0.85151 0.84801 0.91593 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.08 5.47 -17.81 -0.10 1.98 16 3 Si 0.87 20.94 26.91 -169.99 -4.57 16.36 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.26 -6.08 6.55 56.52 0.37 -5.71 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -13.59 8.89 -34.44 -0.31 -13.90 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.02 0.38 2.11 -90.11 -0.19 0.19 16 10 H 0.04 1.01 5.53 -51.93 -0.29 0.72 16 11 C -0.05 -1.14 6.74 38.31 0.26 -0.88 16 12 S -0.34 -6.34 19.60 -107.50 -2.11 -8.45 16 13 C 0.00 -0.02 0.70 -90.86 -0.06 -0.08 16 14 C -0.11 -2.07 4.81 -25.83 -0.12 -2.19 16 15 C -0.10 -1.47 4.64 -27.00 -0.13 -1.59 16 16 C -0.12 -1.66 5.74 -26.68 -0.15 -1.81 16 17 C -0.10 -1.26 5.08 -26.73 -0.14 -1.39 16 18 C -0.09 -1.08 2.14 -90.56 -0.19 -1.27 16 19 H 0.08 1.11 7.13 -51.93 -0.37 0.74 16 20 C 0.07 0.71 6.18 -3.82 -0.02 0.68 16 21 N -0.85 -8.04 9.07 -10.37 -0.09 -8.13 16 22 C -0.09 -1.24 3.91 -27.00 -0.11 -1.35 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 25 H 0.08 1.76 7.73 -51.93 -0.40 1.36 16 26 H 0.07 1.32 7.88 -51.93 -0.41 0.91 16 27 H 0.07 1.30 7.78 -51.93 -0.40 0.90 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.85 7.74 -51.93 -0.40 0.44 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.34 2.55 9.08 -39.29 -0.36 2.19 16 37 H 0.34 3.05 8.99 -39.29 -0.35 2.70 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -28.04 305.26 -9.41 -37.44 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.74 Total: 5.41 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.26 Total: -21.62 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.68 Total: -33.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.57 Total: 16.36 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -2.11 Total: -8.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.04 -9.41 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259314015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.727 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds