Wall clock time and date at job start Mon Mar 30 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48496 * 109.47092 * 94.92813 * 3 2 1 5 5 H 1.48505 * 109.47088 * 214.92691 * 3 2 1 6 6 H 1.48502 * 109.47122 * 334.92485 * 3 2 1 7 7 C 1.37884 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 359.22692 * 7 2 1 9 9 C 1.50693 * 119.99584 * 179.22317 * 7 2 1 10 10 H 1.09002 * 109.95253 * 25.12587 * 9 7 2 11 11 C 1.55177 * 109.96144 * 263.87372 * 9 7 2 12 12 S 1.83544 * 102.21524 * 198.76279 * 11 9 7 13 13 C 1.82729 * 97.34819 * 22.84844 * 12 11 9 14 14 C 1.53762 * 105.04723 * 2.16178 * 13 12 11 15 15 C 1.52382 * 109.88827 * 243.38377 * 13 12 11 16 16 C 1.53095 * 109.56969 * 296.64528 * 15 13 12 17 17 C 1.53001 * 109.40294 * 300.98275 * 16 15 13 18 18 C 1.53004 * 109.54319 * 60.52756 * 17 16 15 19 19 H 1.08996 * 109.47893 * 59.46786 * 18 17 16 20 20 C 1.53004 * 109.48217 * 179.50584 * 18 17 16 21 21 N 1.46901 * 109.46813 * 294.99999 * 20 18 17 22 22 C 1.52368 * 109.91401 * 120.98788 * 13 12 11 23 23 H 0.96991 * 119.99928 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.85930 * 316.94466 * 11 9 7 25 25 H 1.09007 * 110.85173 * 80.58396 * 11 9 7 26 26 H 1.09004 * 109.61828 * 212.44609 * 14 13 12 27 27 H 1.09005 * 109.61943 * 92.25397 * 14 13 12 28 28 H 1.08999 * 109.45145 * 56.68066 * 15 13 12 29 29 H 1.09001 * 109.45198 * 176.63405 * 15 13 12 30 30 H 1.08999 * 109.48469 * 60.96599 * 16 15 13 31 31 H 1.09005 * 109.48295 * 181.00446 * 16 15 13 32 32 H 1.09003 * 109.46127 * 180.54970 * 17 16 15 33 33 H 1.09005 * 109.46347 * 300.51518 * 17 16 15 34 34 H 1.09002 * 109.46966 * 54.99621 * 20 18 17 35 35 H 1.08997 * 109.46936 * 174.99677 * 20 18 17 36 36 H 1.00901 * 110.99466 * 179.97438 * 21 20 18 37 37 H 1.00903 * 111.00125 * 303.94857 * 21 20 18 38 38 H 1.09002 * 109.45181 * 183.38684 * 22 13 12 39 39 H 1.08991 * 109.45336 * 303.32736 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6008 1.9863 1.3949 5 1 3.4908 1.4725 -0.8016 6 1 1.3984 2.6805 -0.5934 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0136 9 6 3.5114 -1.1941 -0.0172 10 1 3.8884 -0.2633 0.4068 11 6 4.0241 -1.3602 -1.4723 12 16 5.7564 -1.9090 -1.2135 13 6 5.5409 -2.5748 0.4745 14 6 4.0465 -2.3928 0.7876 15 6 6.3908 -1.7794 1.4579 16 6 7.8720 -1.9497 1.1101 17 6 8.2409 -3.4333 1.1704 18 6 7.3979 -4.2119 0.1584 19 1 7.5832 -3.8246 -0.8434 20 6 7.7767 -5.6934 0.2111 21 7 9.1673 -5.8593 -0.2322 22 6 5.9144 -4.0517 0.5014 23 1 -0.4849 0.8400 0.0004 24 1 3.4509 -2.1216 -2.0013 25 1 3.9937 -0.4098 -2.0053 26 1 3.9161 -2.2056 1.8535 27 1 3.5015 -3.2943 0.5075 28 1 6.1228 -0.7245 1.3987 29 1 6.2115 -2.1433 2.4696 30 1 8.0554 -1.5699 0.1051 31 1 8.4794 -1.3947 1.8251 32 1 9.2977 -3.5547 0.9325 33 1 8.0484 -3.8150 2.1731 34 1 7.6752 -6.0581 1.2333 35 1 7.1161 -6.2608 -0.4444 36 1 9.4418 -6.8299 -0.2060 37 1 9.3022 -5.4698 -1.1532 38 1 5.7262 -4.4557 1.4962 39 1 5.3125 -4.5917 -0.2293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259314015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:29 Heat of formation + Delta-G solvation = -54.891932 kcal Electronic energy + Delta-G solvation = -17714.587985 eV Core-core repulsion = 15166.483024 eV Total energy + Delta-G solvation = -2548.104961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15813 -37.29968 -35.35182 -34.04496 -31.83152 -31.21521 -27.46586 -26.81174 -25.53568 -23.05173 -22.18628 -20.98858 -20.58388 -19.17720 -17.18790 -16.82588 -16.26267 -15.93652 -15.60164 -15.55668 -15.26640 -14.91959 -14.68753 -14.30178 -14.00426 -13.64941 -13.38013 -13.03688 -12.89229 -12.78676 -12.58956 -12.29145 -12.19096 -11.87356 -11.76875 -11.70450 -11.53978 -11.25388 -10.97845 -10.87025 -10.76455 -10.41754 -9.51739 -8.55173 -8.35389 -6.39993 1.07922 1.30823 1.34309 1.44124 1.59555 2.29438 3.00200 3.52141 3.71782 3.83373 3.91272 4.14083 4.16496 4.33560 4.37773 4.44729 4.47223 4.57982 4.63837 4.71436 4.73399 4.82543 4.84873 4.88886 4.93712 5.05370 5.11929 5.28132 5.30571 5.34542 5.38181 5.49886 5.50566 5.55497 5.63921 6.22779 6.27378 6.65312 6.65730 7.25610 8.80753 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.005964 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.225899 B = 4693.509239 C = 4857.259762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.250 1.250 6 H -0.287 1.287 7 C -0.510 4.510 8 H 0.038 0.962 9 C 0.015 3.985 10 H 0.041 0.959 11 C -0.061 4.061 12 S -0.326 6.326 13 C 0.006 3.994 14 C -0.104 4.104 15 C -0.098 4.098 16 C -0.117 4.117 17 C -0.095 4.095 18 C -0.079 4.079 19 H 0.062 0.938 20 C 0.072 3.928 21 N -0.852 5.852 22 C -0.086 4.086 23 H 0.268 0.732 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.349 0.651 37 H 0.343 0.657 38 H 0.083 0.917 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.750 -8.014 2.122 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.174 1.174 6 H -0.213 1.213 7 C -0.549 4.549 8 H 0.056 0.944 9 C -0.005 4.005 10 H 0.059 0.941 11 C -0.209 4.209 12 S -0.097 6.097 13 C -0.104 4.104 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.155 4.155 17 C -0.132 4.132 18 C -0.098 4.098 19 H 0.080 0.920 20 C -0.059 4.059 21 N -0.383 5.383 22 C -0.126 4.126 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.101 0.899 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.751 -7.399 2.009 20.258 hybrid contribution -2.059 0.306 -0.407 2.121 sum 16.692 -7.093 1.601 18.207 Atomic orbital electron populations 1.70024 1.08124 1.28262 1.51727 1.25874 0.95377 1.02715 0.93801 0.85911 0.79356 0.79113 0.79690 1.18833 1.17393 1.21258 1.21066 0.90179 0.93181 1.50459 0.94388 1.20058 0.94588 0.95877 0.89989 0.94077 1.24659 0.91475 1.02278 1.02501 1.86855 1.18448 1.80200 1.24208 1.22973 0.97276 0.98484 0.91623 1.22293 0.91978 0.98892 1.01146 1.21571 0.95216 0.99052 0.97862 1.21586 0.94650 0.97644 1.01630 1.21394 0.99787 0.93357 0.98695 1.21131 0.93483 0.95482 0.99740 0.92012 1.21725 0.88770 0.94919 1.00484 1.58687 1.22250 1.23889 1.33450 1.21500 0.96650 0.91991 1.02431 0.92302 0.90951 0.90583 0.90571 0.92338 0.92779 0.89951 0.92690 0.90706 0.90927 0.91729 0.90651 0.95719 0.83797 0.84505 0.89901 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 2 C 0.02 1.18 5.47 84.66 0.46 1.64 16 3 Si 0.94 43.30 26.91 68.60 1.85 45.15 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.25 -10.98 6.55 99.48 0.65 -10.33 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.51 -27.98 8.89 25.60 0.23 -27.75 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 9 C 0.02 0.68 2.11 -10.47 -0.02 0.66 16 10 H 0.04 1.87 5.53 -2.39 -0.01 1.86 16 11 C -0.06 -2.56 6.74 72.73 0.49 -2.07 16 12 S -0.33 -11.57 19.60 -56.49 -1.11 -12.68 16 13 C 0.01 0.18 0.70 -10.95 -0.01 0.18 16 14 C -0.10 -3.95 4.81 31.18 0.15 -3.80 16 15 C -0.10 -2.71 4.64 30.42 0.14 -2.57 16 16 C -0.12 -2.82 5.74 30.63 0.18 -2.64 16 17 C -0.09 -2.02 5.08 30.60 0.16 -1.86 16 18 C -0.08 -1.78 2.14 -10.76 -0.02 -1.80 16 19 H 0.06 1.61 7.13 -2.39 -0.02 1.60 16 20 C 0.07 1.33 6.18 86.30 0.53 1.86 16 21 N -0.85 -13.67 9.07 -186.71 -1.69 -15.37 16 22 C -0.09 -2.23 3.91 30.42 0.12 -2.11 16 23 H 0.27 15.28 8.31 -92.72 -0.77 14.51 16 24 H 0.07 3.13 8.10 -2.39 -0.02 3.11 16 25 H 0.08 3.25 7.73 -2.38 -0.02 3.23 16 26 H 0.08 2.77 7.88 -2.39 -0.02 2.75 16 27 H 0.06 2.28 7.78 -2.38 -0.02 2.27 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.50 7.13 -2.39 -0.02 1.48 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.53 7.74 -2.39 -0.02 1.52 16 33 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.35 4.28 9.08 -89.69 -0.81 3.46 16 37 H 0.34 5.29 8.99 -89.69 -0.81 4.49 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 Total: -1.00 -60.78 305.26 1.10 -59.68 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.65 Total: 20.51 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 2.40 Total: -40.27 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.39 Total: -72.40 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.85 Total: 45.15 kcal Atomic # 16 Polarization: -11.57 SS G_CDS: -1.11 Total: -12.68 kcal Total: -60.78 1.10 -59.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259314015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.790 kcal (2) G-P(sol) polarization free energy of solvation -60.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds