Wall clock time and date at job start Mon Mar 30 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99516 * 2 1 4 4 H 1.48496 * 109.47443 * 269.99732 * 3 2 1 5 5 H 1.48498 * 109.47433 * 30.00752 * 3 2 1 6 6 H 1.48506 * 109.46600 * 150.00284 * 3 2 1 7 7 C 1.37876 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00277 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99728 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.97720 * 59.76811 * 9 7 2 11 11 C 1.55170 * 109.95829 * 298.54351 * 9 7 2 12 12 S 1.83544 * 102.21807 * 198.76959 * 11 9 7 13 13 C 1.82738 * 97.34735 * 22.84398 * 12 11 9 14 14 C 1.53764 * 105.04919 * 2.15682 * 13 12 11 15 15 C 1.52368 * 109.90480 * 120.97325 * 13 12 11 16 16 C 1.53098 * 109.56567 * 180.16802 * 15 13 12 17 17 C 1.53008 * 109.42926 * 301.01227 * 16 15 13 18 18 C 1.53016 * 109.54368 * 60.48186 * 17 16 15 19 19 H 1.09004 * 109.47972 * 59.49952 * 18 17 16 20 20 C 1.52993 * 109.47860 * 179.52070 * 18 17 16 21 21 N 1.46906 * 109.47378 * 294.97305 * 20 18 17 22 22 C 1.52370 * 109.88826 * 243.36155 * 13 12 11 23 23 H 0.97006 * 120.00374 * 359.97438 * 1 2 3 24 24 H 1.08995 * 110.85832 * 80.58935 * 11 9 7 25 25 H 1.09001 * 110.85734 * 316.94820 * 11 9 7 26 26 H 1.08995 * 109.61917 * 92.26671 * 14 13 12 27 27 H 1.08999 * 109.61358 * 212.46739 * 14 13 12 28 28 H 1.08997 * 109.46015 * 300.20671 * 15 13 12 29 29 H 1.09002 * 109.45235 * 60.14345 * 15 13 12 30 30 H 1.08998 * 109.48131 * 60.99127 * 16 15 13 31 31 H 1.09001 * 109.48143 * 181.02263 * 16 15 13 32 32 H 1.09000 * 109.44499 * 300.47266 * 17 16 15 33 33 H 1.09001 * 109.46909 * 180.51285 * 17 16 15 34 34 H 1.09004 * 109.46862 * 174.97408 * 20 18 17 35 35 H 1.09000 * 109.47250 * 54.97431 * 20 18 17 36 36 H 1.00902 * 110.99567 * 179.97438 * 21 20 18 37 37 H 1.00901 * 111.00013 * 303.95621 * 21 20 18 38 38 H 1.09003 * 109.45698 * 59.77918 * 22 13 12 39 39 H 1.09000 * 109.44565 * 299.82602 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8842 -0.6783 0.8840 11 6 4.0406 -0.4968 -1.2824 12 16 5.7696 -1.1063 -1.3705 13 6 5.5348 -2.6201 -0.3742 14 6 4.0371 -2.6410 -0.0268 15 6 5.9072 -3.8464 -1.1982 16 6 5.7037 -5.1099 -0.3579 17 6 6.5737 -5.0312 0.8983 18 6 6.1683 -3.8098 1.7261 19 1 5.1186 -3.8938 2.0077 20 6 7.0309 -3.7394 2.9877 21 7 6.7447 -4.8995 3.8422 22 6 6.3742 -2.5407 0.8950 23 1 -0.4851 0.8401 0.0004 24 1 4.0165 0.5874 -1.1724 25 1 3.4731 -0.8117 -2.1581 26 1 3.4949 -3.2140 -0.7789 27 1 3.8949 -3.0994 0.9519 28 1 5.2747 -3.8940 -2.0846 29 1 6.9519 -3.7764 -1.5014 30 1 4.6556 -5.1898 -0.0695 31 1 5.9878 -5.9849 -0.9425 32 1 7.6210 -4.9426 0.6095 33 1 6.4362 -5.9346 1.4926 34 1 6.8043 -2.8225 3.5320 35 1 8.0845 -3.7451 2.7082 36 1 7.3028 -4.8762 4.6824 37 1 5.7614 -4.9528 4.0621 38 1 6.0695 -1.6715 1.4781 39 1 7.4270 -2.4480 0.6286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259314034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:34 Heat of formation + Delta-G solvation = -31.504561 kcal Electronic energy + Delta-G solvation = -17904.268683 eV Core-core repulsion = 15357.177874 eV Total energy + Delta-G solvation = -2547.090808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.28694 -35.63935 -34.18924 -32.05651 -30.55004 -30.07251 -25.82720 -25.27224 -24.54766 -22.22142 -20.89471 -20.25498 -18.18149 -16.83818 -16.34780 -15.65466 -14.86367 -14.69012 -14.58181 -14.26232 -13.99568 -13.69107 -13.22642 -12.79642 -12.60964 -12.14118 -12.01397 -11.76158 -11.60010 -11.48913 -11.10121 -10.85613 -10.80681 -10.62486 -10.20110 -10.14523 -9.88896 -9.72095 -9.55060 -9.39197 -8.96304 -8.74292 -8.65476 -7.13136 -6.21592 -4.22286 2.48105 3.07817 3.18482 3.30562 3.31703 4.28853 4.48743 4.76100 4.87762 5.08255 5.15463 5.20016 5.36401 5.41179 5.55488 5.65134 5.67484 5.74356 5.76650 5.89615 5.90967 6.05126 6.12282 6.18959 6.26752 6.35968 6.37465 6.39381 6.48711 6.54307 6.61802 6.64023 6.90913 7.03276 7.26618 7.33203 7.54815 8.35282 8.81393 9.39467 10.90953 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.007061 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.108997 B = 3964.700402 C = 4301.412925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.511 4.511 8 H 0.078 0.922 9 C 0.014 3.986 10 H 0.040 0.960 11 C -0.058 4.058 12 S -0.354 6.354 13 C 0.003 3.997 14 C -0.102 4.102 15 C -0.092 4.092 16 C -0.119 4.119 17 C -0.102 4.102 18 C -0.085 4.085 19 H 0.076 0.924 20 C 0.066 3.934 21 N -0.850 5.850 22 C -0.088 4.088 23 H 0.266 0.734 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.337 0.663 37 H 0.341 0.659 38 H 0.069 0.931 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.811 -7.689 3.506 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.550 4.550 8 H 0.096 0.904 9 C -0.006 4.006 10 H 0.058 0.942 11 C -0.205 4.205 12 S -0.122 6.122 13 C -0.107 4.107 14 C -0.140 4.140 15 C -0.132 4.132 16 C -0.158 4.158 17 C -0.140 4.140 18 C -0.106 4.106 19 H 0.094 0.906 20 C -0.065 4.065 21 N -0.379 5.379 22 C -0.128 4.128 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.903 -7.475 2.287 15.950 hybrid contribution -0.971 1.468 1.083 2.067 sum 12.932 -6.008 3.370 14.652 Atomic orbital electron populations 1.69876 1.06229 1.27196 1.49734 1.24990 0.94687 0.98915 0.94106 0.87049 0.80339 0.83962 0.78685 1.20140 1.21666 1.18595 1.20877 0.87742 0.94758 1.51634 0.90358 1.20187 0.97474 0.91115 0.91869 0.94165 1.25086 0.89069 1.01879 1.04510 1.87019 1.21918 1.31702 1.71568 1.22824 0.99340 0.92919 0.95600 1.22346 0.90111 0.99411 1.02141 1.21532 1.01473 0.92480 0.97692 1.21635 1.00748 0.96936 0.96520 1.21453 0.98925 0.97999 0.95583 1.21294 1.00024 0.95171 0.94095 0.90560 1.21830 0.99977 0.90899 0.93798 1.58724 1.11585 1.44808 1.22818 1.21534 0.99285 0.97436 0.94507 0.92389 0.90467 0.89352 0.91289 0.90853 0.91315 0.92067 0.91526 0.92144 0.92694 0.91078 0.95510 0.91285 0.85092 0.84684 0.91249 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 3 Si 0.87 21.15 24.36 -169.99 -4.14 17.01 16 4 H -0.28 -6.56 7.06 56.52 0.40 -6.16 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.15 6.48 56.52 0.37 -5.79 16 7 C -0.51 -13.69 9.12 -34.44 -0.31 -14.00 16 8 H 0.08 2.26 8.00 -52.49 -0.42 1.84 16 9 C 0.01 0.31 2.05 -90.11 -0.18 0.13 16 10 H 0.04 0.95 7.20 -51.92 -0.37 0.57 16 11 C -0.06 -1.27 5.69 38.31 0.22 -1.05 16 12 S -0.35 -6.85 22.05 -107.50 -2.37 -9.22 16 13 C 0.00 0.04 0.72 -90.87 -0.07 -0.02 16 14 C -0.10 -1.93 3.71 -25.82 -0.10 -2.02 16 15 C -0.09 -1.34 4.64 -27.00 -0.13 -1.46 16 16 C -0.12 -1.49 5.75 -26.68 -0.15 -1.64 16 17 C -0.10 -1.21 5.08 -26.72 -0.14 -1.35 16 18 C -0.09 -1.07 2.14 -90.56 -0.19 -1.26 16 19 H 0.08 1.04 6.31 -51.93 -0.33 0.71 16 20 C 0.07 0.72 6.18 -3.82 -0.02 0.70 16 21 N -0.85 -8.20 9.07 -10.37 -0.09 -8.29 16 22 C -0.09 -1.29 4.05 -27.00 -0.11 -1.40 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.08 1.75 4.59 -51.93 -0.24 1.51 16 25 H 0.09 1.97 8.10 -51.93 -0.42 1.55 16 26 H 0.07 1.35 7.74 -51.93 -0.40 0.95 16 27 H 0.07 1.33 5.96 -51.93 -0.31 1.02 16 28 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.88 7.44 -51.93 -0.39 0.50 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.84 7.74 -51.93 -0.40 0.43 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.34 2.65 9.08 -39.29 -0.36 2.29 16 37 H 0.34 3.14 8.99 -39.29 -0.35 2.79 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -28.36 299.19 -9.15 -37.51 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.54 Total: 5.54 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.28 Total: -21.37 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.68 Total: -33.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.14 Total: 17.01 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -2.37 Total: -9.22 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.36 -9.15 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259314034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.001 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds