Wall clock time and date at job start Mon Mar 30 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99516 * 2 1 4 4 H 1.48496 * 109.47443 * 269.99732 * 3 2 1 5 5 H 1.48498 * 109.47433 * 30.00752 * 3 2 1 6 6 H 1.48506 * 109.46600 * 150.00284 * 3 2 1 7 7 C 1.37876 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00277 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99728 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.97720 * 59.76811 * 9 7 2 11 11 C 1.55170 * 109.95829 * 298.54351 * 9 7 2 12 12 S 1.83544 * 102.21807 * 198.76959 * 11 9 7 13 13 C 1.82738 * 97.34735 * 22.84398 * 12 11 9 14 14 C 1.53764 * 105.04919 * 2.15682 * 13 12 11 15 15 C 1.52368 * 109.90480 * 120.97325 * 13 12 11 16 16 C 1.53098 * 109.56567 * 180.16802 * 15 13 12 17 17 C 1.53008 * 109.42926 * 301.01227 * 16 15 13 18 18 C 1.53016 * 109.54368 * 60.48186 * 17 16 15 19 19 H 1.09004 * 109.47972 * 59.49952 * 18 17 16 20 20 C 1.52993 * 109.47860 * 179.52070 * 18 17 16 21 21 N 1.46906 * 109.47378 * 294.97305 * 20 18 17 22 22 C 1.52370 * 109.88826 * 243.36155 * 13 12 11 23 23 H 0.97006 * 120.00374 * 359.97438 * 1 2 3 24 24 H 1.08995 * 110.85832 * 80.58935 * 11 9 7 25 25 H 1.09001 * 110.85734 * 316.94820 * 11 9 7 26 26 H 1.08995 * 109.61917 * 92.26671 * 14 13 12 27 27 H 1.08999 * 109.61358 * 212.46739 * 14 13 12 28 28 H 1.08997 * 109.46015 * 300.20671 * 15 13 12 29 29 H 1.09002 * 109.45235 * 60.14345 * 15 13 12 30 30 H 1.08998 * 109.48131 * 60.99127 * 16 15 13 31 31 H 1.09001 * 109.48143 * 181.02263 * 16 15 13 32 32 H 1.09000 * 109.44499 * 300.47266 * 17 16 15 33 33 H 1.09001 * 109.46909 * 180.51285 * 17 16 15 34 34 H 1.09004 * 109.46862 * 174.97408 * 20 18 17 35 35 H 1.09000 * 109.47250 * 54.97431 * 20 18 17 36 36 H 1.00902 * 110.99567 * 179.97438 * 21 20 18 37 37 H 1.00901 * 111.00013 * 303.95621 * 21 20 18 38 38 H 1.09003 * 109.45698 * 59.77918 * 22 13 12 39 39 H 1.09000 * 109.44565 * 299.82602 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8842 -0.6783 0.8840 11 6 4.0406 -0.4968 -1.2824 12 16 5.7696 -1.1063 -1.3705 13 6 5.5348 -2.6201 -0.3742 14 6 4.0371 -2.6410 -0.0268 15 6 5.9072 -3.8464 -1.1982 16 6 5.7037 -5.1099 -0.3579 17 6 6.5737 -5.0312 0.8983 18 6 6.1683 -3.8098 1.7261 19 1 5.1186 -3.8938 2.0077 20 6 7.0309 -3.7394 2.9877 21 7 6.7447 -4.8995 3.8422 22 6 6.3742 -2.5407 0.8950 23 1 -0.4851 0.8401 0.0004 24 1 4.0165 0.5874 -1.1724 25 1 3.4731 -0.8117 -2.1581 26 1 3.4949 -3.2140 -0.7789 27 1 3.8949 -3.0994 0.9519 28 1 5.2747 -3.8940 -2.0846 29 1 6.9519 -3.7764 -1.5014 30 1 4.6556 -5.1898 -0.0695 31 1 5.9878 -5.9849 -0.9425 32 1 7.6210 -4.9426 0.6095 33 1 6.4362 -5.9346 1.4926 34 1 6.8043 -2.8225 3.5320 35 1 8.0845 -3.7451 2.7082 36 1 7.3028 -4.8762 4.6824 37 1 5.7614 -4.9528 4.0621 38 1 6.0695 -1.6715 1.4781 39 1 7.4270 -2.4480 0.6286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259314034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:34 Heat of formation + Delta-G solvation = -49.124587 kcal Electronic energy + Delta-G solvation = -17905.032744 eV Core-core repulsion = 15357.177874 eV Total energy + Delta-G solvation = -2547.854870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49163 -37.11484 -35.44084 -33.94421 -31.71731 -31.29692 -27.49150 -27.15529 -25.52421 -23.40276 -21.97207 -21.94202 -19.52100 -18.84905 -17.74388 -16.73392 -16.40185 -16.12392 -15.60414 -15.55971 -15.40722 -14.98106 -14.83927 -14.46435 -14.00336 -13.50621 -13.23359 -13.01359 -12.99305 -12.86526 -12.75683 -12.59465 -12.16308 -11.91735 -11.76080 -11.59439 -11.38970 -11.11796 -11.07831 -10.97510 -10.86288 -10.49536 -9.51755 -8.68830 -8.38400 -6.42781 0.94573 1.24212 1.29834 1.37222 1.48590 2.23958 2.95993 3.55211 3.65763 3.80604 3.92535 4.06886 4.09477 4.20159 4.30581 4.36240 4.44346 4.52275 4.59141 4.63176 4.67805 4.75348 4.83015 4.86723 4.92593 5.06569 5.11031 5.23199 5.28568 5.33006 5.37745 5.49536 5.51235 5.52266 5.64056 6.19457 6.27295 6.62782 6.65497 7.22437 8.77726 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.007061 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.108997 B = 3964.700402 C = 4301.412925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.025 3.975 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.512 4.512 8 H 0.044 0.956 9 C 0.014 3.986 10 H 0.035 0.965 11 C -0.063 4.063 12 S -0.347 6.347 13 C 0.011 3.989 14 C -0.094 4.094 15 C -0.090 4.090 16 C -0.115 4.115 17 C -0.095 4.095 18 C -0.080 4.080 19 H 0.063 0.937 20 C 0.071 3.929 21 N -0.851 5.851 22 C -0.084 4.084 23 H 0.268 0.732 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.349 0.651 37 H 0.343 0.657 38 H 0.055 0.945 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.406 -8.332 3.907 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.174 4.174 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.173 1.173 7 C -0.551 4.551 8 H 0.062 0.938 9 C -0.006 4.006 10 H 0.053 0.947 11 C -0.211 4.211 12 S -0.115 6.115 13 C -0.098 4.098 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.132 4.132 18 C -0.101 4.101 19 H 0.082 0.918 20 C -0.060 4.060 21 N -0.382 5.382 22 C -0.124 4.124 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.073 0.927 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.517 -8.132 2.696 18.607 hybrid contribution -1.787 1.560 0.968 2.563 sum 14.730 -6.571 3.664 16.540 Atomic orbital electron populations 1.70004 1.07925 1.28181 1.51737 1.25731 0.95298 1.02365 0.93967 0.86128 0.79496 0.79843 0.79184 1.19247 1.21490 1.17296 1.21103 0.90081 0.93382 1.50569 0.93780 1.20110 0.94791 0.93631 0.92105 0.94691 1.24786 0.91435 1.01509 1.03402 1.86966 1.18943 1.33182 1.72435 1.22976 0.97778 0.92513 0.96514 1.22222 0.91806 0.96853 1.02398 1.21529 1.01858 0.92180 0.97330 1.21621 1.00420 0.96544 0.96825 1.21402 0.99129 0.97685 0.95010 1.21229 0.99724 0.94381 0.94740 0.91834 1.21725 0.99877 0.91257 0.93149 1.58700 1.12046 1.43967 1.23469 1.21510 0.99324 0.98105 0.93488 0.92250 0.91000 0.90368 0.92306 0.90087 0.92170 0.90915 0.92549 0.90119 0.91797 0.90458 0.95895 0.90567 0.83779 0.84439 0.92656 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 2 C 0.03 1.43 5.45 84.65 0.46 1.90 16 3 Si 0.93 43.84 24.36 68.60 1.67 45.51 16 4 H -0.27 -12.19 7.06 99.48 0.70 -11.49 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.25 -11.16 6.48 99.48 0.64 -10.52 16 7 C -0.51 -28.19 9.12 25.60 0.23 -27.95 16 8 H 0.04 2.66 8.00 -2.91 -0.02 2.64 16 9 C 0.01 0.63 2.05 -10.47 -0.02 0.61 16 10 H 0.04 1.63 7.20 -2.38 -0.02 1.61 16 11 C -0.06 -2.75 5.69 72.73 0.41 -2.33 16 12 S -0.35 -12.86 22.05 -56.49 -1.25 -14.11 16 13 C 0.01 0.36 0.72 -10.95 -0.01 0.35 16 14 C -0.09 -3.55 3.71 31.18 0.12 -3.43 16 15 C -0.09 -2.38 4.64 30.42 0.14 -2.24 16 16 C -0.11 -2.56 5.75 30.63 0.18 -2.38 16 17 C -0.09 -1.95 5.08 30.60 0.16 -1.79 16 18 C -0.08 -1.82 2.14 -10.76 -0.02 -1.84 16 19 H 0.06 1.62 6.31 -2.38 -0.02 1.61 16 20 C 0.07 1.37 6.18 86.30 0.53 1.90 16 21 N -0.85 -14.19 9.07 -186.71 -1.69 -15.89 16 22 C -0.08 -2.29 4.05 30.42 0.12 -2.17 16 23 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 24 H 0.07 3.18 4.59 -2.39 -0.01 3.17 16 25 H 0.08 3.51 8.10 -2.39 -0.02 3.49 16 26 H 0.06 2.31 7.74 -2.39 -0.02 2.29 16 27 H 0.08 2.90 5.96 -2.39 -0.01 2.89 16 28 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.39 7.44 -2.39 -0.02 1.37 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.55 7.74 -2.39 -0.02 1.53 16 34 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.35 4.55 9.08 -89.69 -0.81 3.74 16 37 H 0.34 5.58 8.99 -89.69 -0.81 4.78 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -61.00 299.19 0.68 -60.31 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.65 Total: 20.41 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 2.30 Total: -39.39 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -1.39 Total: -72.75 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.67 Total: 45.51 kcal Atomic # 16 Polarization: -12.86 SS G_CDS: -1.25 Total: -14.11 kcal Total: -61.00 0.68 -60.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259314034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.187 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds