Wall clock time and date at job start Mon Mar 30 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00237 * 2 1 4 4 H 1.48507 * 109.46816 * 270.00033 * 3 2 1 5 5 H 1.48505 * 109.47103 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47372 * 150.00129 * 3 2 1 7 7 C 1.37881 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00132 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99841 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.45336 * 300.02249 * 9 7 2 11 11 C 1.53036 * 109.46142 * 180.02562 * 9 7 2 12 12 C 1.53119 * 109.27852 * 299.16224 * 11 9 7 13 13 H 1.09002 * 109.52432 * 62.24925 * 12 11 9 14 14 C 1.52999 * 109.57543 * 182.41012 * 12 11 9 15 15 C 1.52582 * 109.22382 * 300.43805 * 14 12 11 16 16 C 1.53121 * 109.94552 * 168.96475 * 15 14 12 17 17 S 1.81747 * 108.80747 * 63.08380 * 16 15 14 18 18 C 1.81750 * 102.22100 * 306.71407 * 17 16 15 19 19 C 1.52581 * 109.22783 * 179.24482 * 14 12 11 20 20 C 1.53117 * 109.15738 * 302.34572 * 12 11 9 21 21 C 1.53032 * 109.28126 * 57.65434 * 20 12 11 22 22 N 1.46840 * 109.46390 * 59.99636 * 9 7 2 23 23 H 0.96998 * 119.99650 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.50328 * 179.21550 * 11 9 7 25 25 H 1.09001 * 109.50559 * 59.10166 * 11 9 7 26 26 H 1.09002 * 109.22427 * 59.83837 * 14 12 11 27 27 H 1.09001 * 109.39040 * 289.14782 * 15 14 12 28 28 H 1.09003 * 109.39088 * 48.85788 * 15 14 12 29 29 H 1.09008 * 109.60457 * 303.27792 * 16 15 14 30 30 H 1.08997 * 109.57642 * 182.87629 * 16 15 14 31 31 H 1.08999 * 109.57667 * 293.45962 * 18 17 16 32 32 H 1.09001 * 109.67834 * 173.13930 * 18 17 16 33 33 H 1.09005 * 109.38457 * 311.14409 * 19 14 12 34 34 H 1.09002 * 109.39151 * 70.84643 * 19 14 12 35 35 H 1.08999 * 109.50058 * 177.59669 * 20 12 11 36 36 H 1.09004 * 109.50737 * 297.66795 * 20 12 11 37 37 H 1.09004 * 109.46249 * 60.83239 * 21 20 12 38 38 H 1.08997 * 109.46355 * 180.81362 * 21 20 12 39 39 H 1.00898 * 111.00595 * 294.17825 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6238 -2.5562 0.8902 11 6 2.2457 -3.6622 0.0018 12 6 3.1105 -3.5893 -1.2597 13 1 3.6844 -2.6626 -1.2548 14 6 4.0669 -4.7829 -1.2952 15 6 4.9546 -4.7526 -0.0545 16 6 5.7222 -6.0715 0.0709 17 16 6.8213 -6.2486 -1.3657 18 6 5.6742 -6.0257 -2.7576 19 6 4.9114 -4.7126 -2.5641 20 6 2.2038 -3.6232 -2.4931 21 6 1.2104 -2.4613 -2.4221 22 7 0.4073 -2.5770 -1.1987 23 1 -0.4849 0.8401 -0.0004 24 1 1.7014 -4.6065 0.0159 25 1 2.8825 -3.5955 0.8839 26 1 3.4882 -5.7066 -1.2999 27 1 5.6623 -3.9276 -0.1360 28 1 4.3346 -4.6097 0.8306 29 1 5.0182 -6.9034 0.0970 30 1 6.3150 -6.0635 0.9856 31 1 4.9693 -6.8567 -2.7867 32 1 6.2338 -5.9887 -3.6922 33 1 4.2613 -4.5418 -3.4223 34 1 5.6219 -3.8902 -2.4808 35 1 2.8107 -3.5285 -3.3935 36 1 1.6594 -4.5672 -2.5188 37 1 1.7556 -1.5175 -2.4107 38 1 0.5539 -2.4911 -3.2916 39 1 -0.3189 -1.8768 -1.1761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259316563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:46 Heat of formation + Delta-G solvation = -30.163185 kcal Electronic energy + Delta-G solvation = -18019.052977 eV Core-core repulsion = 15472.020335 eV Total energy + Delta-G solvation = -2547.032642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87139 -36.09611 -32.56404 -31.61050 -30.72873 -29.65346 -26.40266 -25.12017 -23.21104 -21.94290 -21.07426 -19.79331 -18.73106 -16.78558 -15.96594 -15.55544 -14.63225 -14.50621 -14.27470 -13.76238 -13.56426 -13.20575 -13.05407 -12.76292 -12.73719 -12.51276 -11.74845 -11.53422 -11.31654 -11.30395 -10.99724 -10.91564 -10.67140 -10.57954 -10.42412 -10.09869 -9.90973 -9.57485 -9.34987 -9.13119 -9.01587 -8.46024 -7.66576 -6.95473 -6.02154 -4.17503 1.82531 2.56397 3.22600 3.30717 3.33738 4.35343 4.73876 4.88976 4.89849 5.08636 5.17282 5.26045 5.35667 5.48270 5.62577 5.68648 5.80357 5.93090 5.95039 6.07112 6.12349 6.16332 6.25710 6.38801 6.45142 6.55140 6.60977 6.69314 6.85758 7.00214 7.07025 7.18955 7.29247 7.69834 7.79068 8.22661 8.69677 8.93309 9.12811 9.52579 10.94659 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.005921 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.615976 B = 4728.007311 C = 5024.005510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.204 3.796 10 H 0.036 0.964 11 C -0.095 4.095 12 C -0.069 4.069 13 H 0.074 0.926 14 C -0.089 4.089 15 C -0.120 4.120 16 C -0.074 4.074 17 S -0.289 6.289 18 C -0.074 4.074 19 C -0.121 4.121 20 C -0.102 4.102 21 C 0.069 3.931 22 N -0.690 5.690 23 H 0.263 0.737 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -9.879 -3.797 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.096 3.904 10 H 0.054 0.946 11 C -0.133 4.133 12 C -0.087 4.087 13 H 0.092 0.908 14 C -0.108 4.108 15 C -0.159 4.159 16 C -0.222 4.222 17 S -0.064 6.064 18 C -0.223 4.223 19 C -0.159 4.159 20 C -0.140 4.140 21 C -0.062 4.062 22 N -0.324 5.324 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.050 -10.661 -3.817 14.496 hybrid contribution -0.552 2.190 0.031 2.258 sum 8.499 -8.472 -3.786 12.583 Atomic orbital electron populations 1.69729 1.05816 1.26882 1.51176 1.25007 0.94837 0.99097 0.94758 0.86665 0.80020 0.83695 0.78079 1.20792 1.21197 1.19920 1.21838 0.93460 0.91687 1.50406 0.92752 1.19054 0.90419 0.90863 0.90102 0.94585 1.21620 0.97286 0.98793 0.95603 1.21064 0.95031 0.96482 0.96168 0.90764 1.21210 0.96104 1.00206 0.93254 1.21867 0.98749 0.95568 0.99720 1.23473 1.00014 1.01486 0.97213 1.86694 1.20711 1.95159 1.03793 1.23440 0.99690 1.01374 0.97753 1.21874 0.98954 0.95796 0.99293 1.21590 0.96895 0.99165 0.96362 1.21517 0.94840 0.96642 0.93181 1.60914 1.15108 1.54721 1.01641 0.92690 0.94187 0.93212 0.91824 0.90861 0.89802 0.90128 0.88245 0.90170 0.88342 0.90237 0.90885 0.93444 0.92959 0.94618 0.94315 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 11.56 55.43 0.64 -23.97 16 2 C 0.06 1.72 5.39 -17.81 -0.10 1.63 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -13.87 6.47 -34.44 -0.22 -14.09 16 8 H 0.05 1.42 6.76 -52.49 -0.35 1.06 16 9 C 0.20 4.92 3.04 -68.88 -0.21 4.71 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.10 -1.89 4.44 -26.65 -0.12 -2.01 16 12 C -0.07 -1.21 1.58 -90.50 -0.14 -1.35 16 13 H 0.07 1.48 6.73 -51.93 -0.35 1.13 16 14 C -0.09 -1.26 1.53 -91.05 -0.14 -1.40 16 15 C -0.12 -1.62 4.94 -26.88 -0.13 -1.75 16 16 C -0.07 -0.87 6.46 37.22 0.24 -0.63 16 17 S -0.29 -3.66 22.33 -107.50 -2.40 -6.06 16 18 C -0.07 -0.84 6.45 37.20 0.24 -0.60 16 19 C -0.12 -1.52 4.94 -26.90 -0.13 -1.66 16 20 C -0.10 -1.81 4.96 -26.65 -0.13 -1.94 16 21 C 0.07 1.45 6.30 -3.86 -0.02 1.43 16 22 N -0.69 -16.18 6.60 -108.03 -0.71 -16.89 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.96 6.31 -51.93 -0.33 0.63 16 26 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.07 1.04 8.05 -51.93 -0.42 0.63 16 28 H 0.08 1.17 5.91 -51.93 -0.31 0.87 16 29 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.98 5.90 -51.93 -0.31 0.67 16 34 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.05 0.74 6.31 -51.93 -0.33 0.41 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.84 6.99 -51.93 -0.36 0.48 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 9.06 6.95 -39.29 -0.27 8.79 16 LS Contribution 297.34 15.07 4.48 4.48 Total: -1.00 -26.39 297.34 -10.27 -36.65 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.38 Total: 7.59 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.87 Total: -17.66 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.07 Total: -40.86 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.40 Total: -6.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.39 -10.27 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.491 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds