Wall clock time and date at job start Mon Mar 30 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00139 * 2 1 4 4 H 1.48507 * 109.47234 * 240.00412 * 3 2 1 5 5 H 1.48510 * 109.47324 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47246 * 120.00187 * 3 2 1 7 7 C 1.37875 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.30703 * 55.33993 * 9 7 2 11 11 C 1.53088 * 109.38876 * 295.58528 * 9 7 2 12 12 S 1.81749 * 108.84266 * 302.87262 * 11 9 7 13 13 C 1.81750 * 102.22165 * 306.73710 * 12 11 9 14 14 C 1.53099 * 108.83728 * 53.26305 * 13 12 11 15 15 C 1.52578 * 109.39043 * 175.08831 * 9 7 2 16 16 H 1.08998 * 109.19328 * 169.77209 * 15 9 7 17 17 N 1.46901 * 109.22927 * 289.15426 * 15 9 7 18 18 C 1.46849 * 110.99905 * 177.62689 * 17 15 9 19 19 C 1.53038 * 109.52121 * 185.79888 * 18 17 15 20 20 C 1.53114 * 109.31174 * 300.88199 * 19 18 17 21 21 C 1.53113 * 109.16191 * 57.63647 * 20 19 18 22 22 C 1.46843 * 110.99803 * 301.88353 * 17 15 9 23 23 H 0.97008 * 119.99893 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.57284 * 183.06734 * 11 9 7 25 25 H 1.08998 * 109.58195 * 62.68425 * 11 9 7 26 26 H 1.08999 * 109.57518 * 293.45682 * 13 12 11 27 27 H 1.08997 * 109.67659 * 173.13173 * 13 12 11 28 28 H 1.09007 * 109.38675 * 176.82438 * 14 13 12 29 29 H 1.08997 * 109.38989 * 57.12649 * 14 13 12 30 30 H 1.09001 * 109.42650 * 65.80575 * 18 17 15 31 31 H 1.08996 * 109.49848 * 305.83712 * 18 17 15 32 32 H 1.09005 * 109.49772 * 180.92103 * 19 18 17 33 33 H 1.08998 * 109.50524 * 60.84886 * 19 18 17 34 34 H 1.09001 * 109.52283 * 177.54426 * 20 19 18 35 35 H 1.09007 * 109.52370 * 297.72885 * 20 19 18 36 36 H 1.09006 * 109.49967 * 62.28421 * 21 20 19 37 37 H 1.09000 * 109.50708 * 182.36376 * 21 20 19 38 38 H 1.08996 * 109.46626 * 54.13975 * 22 17 15 39 39 H 1.09009 * 109.46154 * 294.17404 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5637 -2.5186 -0.8464 11 6 0.4572 -2.6278 1.3022 12 16 1.6061 -2.4992 2.7046 13 6 2.8486 -3.7629 2.3012 14 6 3.3730 -3.5064 0.8859 15 6 2.2394 -3.6548 -0.1244 16 1 1.7171 -4.5941 0.0576 17 7 2.8002 -3.6684 -1.4821 18 6 3.8006 -4.7335 -1.6276 19 6 4.4650 -4.6267 -3.0021 20 6 3.3967 -4.7507 -4.0919 21 6 2.3422 -3.6594 -3.8885 22 6 1.7385 -3.7947 -2.4887 23 1 -0.4850 0.8401 0.0004 24 1 -0.0457 -3.5945 1.3295 25 1 -0.2812 -1.8282 1.3605 26 1 2.3923 -4.7517 2.3481 27 1 3.6730 -3.7070 3.0120 28 1 4.1595 -4.2252 0.6557 29 1 3.7795 -2.4967 0.8281 30 1 3.3131 -5.7040 -1.5343 31 1 4.5570 -4.6310 -0.8496 32 1 5.1959 -5.4274 -3.1161 33 1 4.9651 -3.6623 -3.0906 34 1 3.8600 -4.6316 -5.0714 35 1 2.9237 -5.7308 -4.0286 36 1 2.8084 -2.6794 -3.9905 37 1 1.5566 -3.7684 -4.6363 38 1 0.9974 -3.0103 -2.3354 39 1 1.2605 -4.7696 -2.3920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259324221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:12 Heat of formation + Delta-G solvation = -16.232983 kcal Electronic energy + Delta-G solvation = -18380.484730 eV Core-core repulsion = 15834.056147 eV Total energy + Delta-G solvation = -2546.428583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45534 -37.42840 -34.62167 -32.81204 -32.18378 -31.18811 -27.47677 -26.74928 -24.66709 -24.00880 -22.51288 -20.81582 -20.54322 -18.34637 -17.49526 -16.78443 -16.52596 -15.68821 -15.41619 -15.07208 -15.03533 -14.61991 -14.32459 -14.27627 -13.90251 -13.74883 -13.54315 -13.18949 -12.80398 -12.77264 -12.54426 -12.43869 -12.18343 -12.02147 -11.65437 -11.56895 -11.43025 -11.03095 -10.94643 -10.58030 -10.35159 -10.13657 -8.95634 -8.20660 -7.97301 -5.96255 1.25799 1.45833 1.47615 1.52660 2.03200 2.54938 3.04809 3.39882 3.95615 3.98093 4.02530 4.15615 4.25908 4.28931 4.41261 4.51346 4.54734 4.58689 4.63008 4.72062 4.75231 4.81408 4.91924 4.96750 5.00477 5.12206 5.15323 5.22954 5.28656 5.38899 5.46883 5.56774 5.59196 5.66501 6.02110 6.35428 6.48032 6.56450 7.03691 7.65477 9.11312 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.009580 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.238395 B = 2922.175613 C = 3751.334813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.014 3.986 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.452 4.452 8 H 0.057 0.943 9 C 0.046 3.954 10 H 0.020 0.980 11 C -0.049 4.049 12 S -0.311 6.311 13 C -0.062 4.062 14 C -0.109 4.109 15 C 0.103 3.897 16 H 0.010 0.990 17 N -0.530 5.530 18 C 0.047 3.953 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.112 4.112 22 C 0.059 3.941 23 H 0.253 0.747 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -11.405 -3.825 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.491 4.491 8 H 0.075 0.925 9 C 0.026 3.974 10 H 0.038 0.962 11 C -0.198 4.198 12 S -0.085 6.085 13 C -0.210 4.210 14 C -0.148 4.148 15 C -0.006 4.006 16 H 0.028 0.972 17 N -0.255 5.255 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.069 4.069 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.327 -10.160 -3.014 12.884 hybrid contribution -0.636 -0.136 -0.765 1.005 sum 6.690 -10.297 -3.779 12.848 Atomic orbital electron populations 1.69955 1.06842 1.26354 1.54044 1.25419 0.95264 1.01306 0.96195 0.85967 0.78555 0.80876 0.78349 1.20215 1.22133 1.20227 1.21018 0.92528 0.89893 1.45644 0.92460 1.18878 0.92879 0.93776 0.91825 0.96236 1.23445 0.98690 1.01564 0.96086 1.86277 1.32498 1.55580 1.34169 1.23317 0.99261 0.98163 1.00277 1.21793 0.97608 1.03465 0.91900 1.21413 0.95075 0.95544 0.88545 0.97188 1.61694 1.14765 1.46544 1.02448 1.22284 0.95222 0.91523 0.98968 1.21564 0.97776 1.02340 0.93234 1.21546 0.96260 0.98099 0.99181 1.21538 0.98892 0.99668 0.94840 1.22033 0.93694 0.98549 0.92664 0.93816 0.93371 0.89340 0.89949 0.86704 0.89670 0.90920 0.95544 0.89983 0.89617 0.92290 0.90508 0.91899 0.92747 0.90961 0.92666 0.95991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.64 11.67 21.45 0.25 -53.39 16 2 C 0.01 0.79 5.32 84.65 0.45 1.24 16 3 Si 0.93 45.16 29.54 68.60 2.03 47.19 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.45 -23.61 6.73 25.60 0.17 -23.44 16 8 H 0.06 3.04 5.86 -2.91 -0.02 3.03 16 9 C 0.05 2.18 1.81 -11.65 -0.02 2.16 16 10 H 0.02 1.05 5.66 -2.39 -0.01 1.03 16 11 C -0.05 -2.27 5.78 72.01 0.42 -1.86 16 12 S -0.31 -13.27 21.44 -56.49 -1.21 -14.48 16 13 C -0.06 -2.02 6.46 72.02 0.46 -1.56 16 14 C -0.11 -3.79 4.85 30.49 0.15 -3.64 16 15 C 0.10 3.95 1.40 44.64 0.06 4.01 16 16 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 17 N -0.53 -18.96 4.36 -872.76 -3.81 -22.77 16 18 C 0.05 1.31 5.17 86.33 0.45 1.76 16 19 C -0.11 -2.60 6.09 30.65 0.19 -2.42 16 20 C -0.11 -2.57 6.00 30.67 0.18 -2.39 16 21 C -0.11 -3.21 6.09 30.65 0.19 -3.02 16 22 C 0.06 2.05 5.20 86.33 0.45 2.50 16 23 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.09 4.76 6.50 -2.39 -0.02 4.75 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.09 2.43 5.61 -2.38 -0.01 2.42 16 29 H 0.07 2.97 5.67 -2.39 -0.01 2.95 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 2.15 5.68 -2.39 -0.01 2.13 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 2.34 5.72 -2.39 -0.01 2.33 16 39 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -59.10 295.91 1.42 -57.68 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.02 Total: 12.39 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.15 Total: -26.63 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -3.56 Total: -76.16 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: -13.27 SS G_CDS: -1.21 Total: -14.48 kcal Total: -59.10 1.42 -57.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.448 kcal (2) G-P(sol) polarization free energy of solvation -59.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds