Wall clock time and date at job start Mon Mar 30 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48494 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47432 * 300.00733 * 3 2 1 6 6 H 1.48503 * 109.46947 * 60.00628 * 3 2 1 7 7 C 1.37882 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99766 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.39059 * 304.78607 * 9 7 2 11 11 C 1.53098 * 109.39002 * 64.59292 * 9 7 2 12 12 S 1.81755 * 108.83343 * 56.93996 * 11 9 7 13 13 C 1.81747 * 102.15988 * 53.40071 * 12 11 9 14 14 C 1.53100 * 108.84215 * 306.68237 * 13 12 11 15 15 C 1.52579 * 109.38797 * 184.98880 * 9 7 2 16 16 H 1.08998 * 109.22807 * 190.30774 * 15 9 7 17 17 N 1.46901 * 109.22763 * 70.94354 * 15 9 7 18 18 C 1.46847 * 111.00026 * 182.25808 * 17 15 9 19 19 C 1.53038 * 109.52591 * 174.16179 * 18 17 15 20 20 C 1.53127 * 109.27679 * 59.18131 * 19 18 17 21 21 C 1.53119 * 109.15897 * 302.34806 * 20 19 18 22 22 C 1.46849 * 110.99701 * 58.05224 * 17 15 9 23 23 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.57306 * 176.82833 * 11 9 7 25 25 H 1.09003 * 109.57360 * 297.21168 * 11 9 7 26 26 H 1.09001 * 109.57793 * 186.87638 * 13 12 11 27 27 H 1.09000 * 109.57479 * 66.49107 * 13 12 11 28 28 H 1.08994 * 109.38902 * 302.87712 * 14 13 12 29 29 H 1.08992 * 109.38897 * 183.17249 * 14 13 12 30 30 H 1.08996 * 109.46510 * 294.18079 * 18 17 15 31 31 H 1.09000 * 109.46204 * 54.14952 * 18 17 15 32 32 H 1.09001 * 109.50105 * 299.24313 * 19 18 17 33 33 H 1.09001 * 109.53939 * 179.13961 * 19 18 17 34 34 H 1.08997 * 109.52270 * 182.44623 * 20 19 18 35 35 H 1.08999 * 109.52047 * 62.24549 * 20 19 18 36 36 H 1.09005 * 109.50276 * 297.71037 * 21 20 19 37 37 H 1.09002 * 109.53832 * 177.61302 * 21 20 19 38 38 H 1.08995 * 109.46117 * 305.84870 * 22 17 15 39 39 H 1.08998 * 109.46377 * 65.83231 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5624 -2.5195 0.8442 11 6 0.4598 -2.6292 -1.3047 12 16 1.6108 -2.4967 -2.7051 13 6 2.8528 -3.7604 -2.3007 14 6 3.3750 -3.5052 -0.8843 15 6 2.2395 -3.6548 0.1240 16 1 1.7182 -4.5944 -0.0593 17 7 2.7980 -3.6694 1.4826 18 6 3.7963 -4.7362 1.6297 19 6 4.4594 -4.6302 3.0049 20 6 3.3891 -4.7536 4.0931 21 6 2.3359 -3.6611 3.8882 22 6 1.7345 -3.7953 2.4874 23 1 -0.4850 0.8400 0.0004 24 1 -0.0416 -3.5967 -1.3327 25 1 -0.2798 -1.8307 -1.3644 26 1 3.6782 -3.7016 -3.0102 27 1 2.3968 -4.7493 -2.3492 28 1 3.7811 -2.4955 -0.8248 29 1 4.1610 -4.2241 -0.6534 30 1 3.3080 -5.7062 1.5359 31 1 4.5538 -4.6345 0.8526 32 1 4.9597 -3.6659 3.0943 33 1 5.1896 -5.4312 3.1203 34 1 3.8508 -4.6352 5.0733 35 1 2.9151 -5.7330 4.0284 36 1 2.8029 -2.6816 3.9915 37 1 1.5485 -3.7694 4.6342 38 1 0.9945 -3.0100 2.3332 39 1 1.2559 -4.7697 2.3896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259324226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:14 Heat of formation + Delta-G solvation = -1.875899 kcal Electronic energy + Delta-G solvation = -18379.861539 eV Core-core repulsion = 15834.055526 eV Total energy + Delta-G solvation = -2545.806013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.04362 -35.94707 -32.78906 -31.47898 -30.66001 -29.63140 -25.79542 -24.95286 -23.32513 -22.61790 -21.00878 -19.40815 -19.03126 -16.52410 -16.02786 -15.05766 -14.61126 -14.28826 -14.15197 -13.70518 -13.44834 -13.22989 -12.97545 -12.67613 -12.40490 -12.22671 -11.83716 -11.56312 -11.30537 -11.05784 -10.85475 -10.73430 -10.63660 -10.52659 -10.34349 -10.14778 -9.89186 -9.63899 -9.14900 -8.85171 -8.53605 -8.20069 -7.53833 -6.47201 -5.90910 -3.86741 2.88286 3.40448 3.48558 3.53046 3.74123 4.43069 4.57503 5.11407 5.16534 5.20522 5.45383 5.50322 5.60800 5.67122 5.74352 5.83584 5.88859 5.91726 5.97123 6.08257 6.15454 6.18833 6.21914 6.28621 6.36388 6.41350 6.44807 6.59061 6.71394 6.74700 6.87135 7.07007 7.39714 7.55262 7.82704 7.93138 8.11297 8.47049 9.10092 9.74035 11.19248 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.009577 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.573722 B = 2922.900421 C = 3751.387474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.461 4.461 8 H 0.066 0.934 9 C 0.045 3.955 10 H 0.048 0.952 11 C -0.055 4.055 12 S -0.276 6.276 13 C -0.076 4.076 14 C -0.116 4.116 15 C 0.096 3.904 16 H 0.008 0.992 17 N -0.512 5.512 18 C 0.049 3.951 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.115 4.115 22 C 0.056 3.944 23 H 0.257 0.743 24 H 0.035 0.965 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -9.462 3.440 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.025 3.975 10 H 0.066 0.934 11 C -0.204 4.204 12 S -0.050 6.050 13 C -0.225 4.225 14 C -0.154 4.154 15 C -0.012 4.012 16 H 0.026 0.974 17 N -0.236 5.236 18 C -0.080 4.080 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.072 4.072 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.140 0.860 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.212 -8.215 2.623 10.076 hybrid contribution -0.023 -0.693 0.876 1.118 sum 5.188 -8.908 3.499 10.887 Atomic orbital electron populations 1.69847 1.05886 1.26173 1.52577 1.24844 0.94692 0.98839 0.95543 0.86560 0.80321 0.84225 0.77041 1.19826 1.21394 1.21648 1.20935 0.92944 0.88844 1.47225 0.91635 1.18987 0.92656 0.93119 0.92747 0.93444 1.23700 0.98884 1.02201 0.95580 1.86237 1.30809 1.52974 1.34999 1.23212 1.00045 0.99077 1.00156 1.21884 0.97449 1.04148 0.91919 1.21613 0.95317 0.97306 0.86941 0.97413 1.61731 1.14236 1.44377 1.03262 1.22176 0.96069 0.92355 0.97356 1.21559 0.97363 1.01850 0.94440 1.21569 0.97079 0.98756 0.98237 1.21566 0.97854 0.99547 0.96288 1.22124 0.94170 0.99742 0.91156 0.93348 0.94643 0.85957 0.89389 0.92027 0.88215 0.92977 0.96329 0.90646 0.91105 0.92514 0.92529 0.92941 0.90907 0.92330 0.88868 0.96599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.69 55.43 0.65 -24.49 16 2 C 0.06 1.62 5.33 -17.82 -0.09 1.52 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.46 -11.82 6.72 -34.44 -0.23 -12.05 16 8 H 0.07 1.74 5.85 -52.49 -0.31 1.43 16 9 C 0.04 1.03 1.82 -91.94 -0.17 0.87 16 10 H 0.05 1.20 5.66 -51.93 -0.29 0.91 16 11 C -0.05 -1.25 5.78 37.21 0.22 -1.04 16 12 S -0.28 -5.96 21.44 -107.50 -2.30 -8.26 16 13 C -0.08 -1.35 6.45 37.21 0.24 -1.11 16 14 C -0.12 -2.14 4.86 -26.89 -0.13 -2.27 16 15 C 0.10 1.90 1.40 -68.14 -0.10 1.81 16 16 H 0.01 0.16 8.08 -51.93 -0.42 -0.26 16 17 N -0.51 -9.44 4.37 -227.21 -0.99 -10.44 16 18 C 0.05 0.75 5.17 -3.83 -0.02 0.73 16 19 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 20 C -0.12 -1.53 6.00 -26.60 -0.16 -1.69 16 21 C -0.11 -1.71 6.09 -26.65 -0.16 -1.88 16 22 C 0.06 0.98 5.20 -3.83 -0.02 0.96 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.12 3.16 6.51 -51.93 -0.34 2.82 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 2.12 5.67 -51.93 -0.29 1.82 16 29 H 0.05 0.85 5.62 -51.93 -0.29 0.56 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 1.13 5.68 -51.93 -0.29 0.84 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.89 5.72 -51.93 -0.30 1.59 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -26.90 295.91 -10.32 -37.22 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.32 Total: 0.68 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.79 Total: -15.85 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.34 Total: -34.93 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -2.30 Total: -8.26 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.90 -10.32 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.343 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds