Wall clock time and date at job start Mon Mar 30 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48494 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47432 * 300.00733 * 3 2 1 6 6 H 1.48503 * 109.46947 * 60.00628 * 3 2 1 7 7 C 1.37882 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99766 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.39059 * 304.78607 * 9 7 2 11 11 C 1.53098 * 109.39002 * 64.59292 * 9 7 2 12 12 S 1.81755 * 108.83343 * 56.93996 * 11 9 7 13 13 C 1.81747 * 102.15988 * 53.40071 * 12 11 9 14 14 C 1.53100 * 108.84215 * 306.68237 * 13 12 11 15 15 C 1.52579 * 109.38797 * 184.98880 * 9 7 2 16 16 H 1.08998 * 109.22807 * 190.30774 * 15 9 7 17 17 N 1.46901 * 109.22763 * 70.94354 * 15 9 7 18 18 C 1.46847 * 111.00026 * 182.25808 * 17 15 9 19 19 C 1.53038 * 109.52591 * 174.16179 * 18 17 15 20 20 C 1.53127 * 109.27679 * 59.18131 * 19 18 17 21 21 C 1.53119 * 109.15897 * 302.34806 * 20 19 18 22 22 C 1.46849 * 110.99701 * 58.05224 * 17 15 9 23 23 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.57306 * 176.82833 * 11 9 7 25 25 H 1.09003 * 109.57360 * 297.21168 * 11 9 7 26 26 H 1.09001 * 109.57793 * 186.87638 * 13 12 11 27 27 H 1.09000 * 109.57479 * 66.49107 * 13 12 11 28 28 H 1.08994 * 109.38902 * 302.87712 * 14 13 12 29 29 H 1.08992 * 109.38897 * 183.17249 * 14 13 12 30 30 H 1.08996 * 109.46510 * 294.18079 * 18 17 15 31 31 H 1.09000 * 109.46204 * 54.14952 * 18 17 15 32 32 H 1.09001 * 109.50105 * 299.24313 * 19 18 17 33 33 H 1.09001 * 109.53939 * 179.13961 * 19 18 17 34 34 H 1.08997 * 109.52270 * 182.44623 * 20 19 18 35 35 H 1.08999 * 109.52047 * 62.24549 * 20 19 18 36 36 H 1.09005 * 109.50276 * 297.71037 * 21 20 19 37 37 H 1.09002 * 109.53832 * 177.61302 * 21 20 19 38 38 H 1.08995 * 109.46117 * 305.84870 * 22 17 15 39 39 H 1.08998 * 109.46377 * 65.83231 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5624 -2.5195 0.8442 11 6 0.4598 -2.6292 -1.3047 12 16 1.6108 -2.4967 -2.7051 13 6 2.8528 -3.7604 -2.3007 14 6 3.3750 -3.5052 -0.8843 15 6 2.2395 -3.6548 0.1240 16 1 1.7182 -4.5944 -0.0593 17 7 2.7980 -3.6694 1.4826 18 6 3.7963 -4.7362 1.6297 19 6 4.4594 -4.6302 3.0049 20 6 3.3891 -4.7536 4.0931 21 6 2.3359 -3.6611 3.8882 22 6 1.7345 -3.7953 2.4874 23 1 -0.4850 0.8400 0.0004 24 1 -0.0416 -3.5967 -1.3327 25 1 -0.2798 -1.8307 -1.3644 26 1 3.6782 -3.7016 -3.0102 27 1 2.3968 -4.7493 -2.3492 28 1 3.7811 -2.4955 -0.8248 29 1 4.1610 -4.2241 -0.6534 30 1 3.3080 -5.7062 1.5359 31 1 4.5538 -4.6345 0.8526 32 1 4.9597 -3.6659 3.0943 33 1 5.1896 -5.4312 3.1203 34 1 3.8508 -4.6352 5.0733 35 1 2.9151 -5.7330 4.0284 36 1 2.8029 -2.6816 3.9915 37 1 1.5485 -3.7694 4.6342 38 1 0.9945 -3.0100 2.3332 39 1 1.2559 -4.7697 2.3896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259324226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:13 Heat of formation + Delta-G solvation = -16.377591 kcal Electronic energy + Delta-G solvation = -18380.490380 eV Core-core repulsion = 15834.055526 eV Total energy + Delta-G solvation = -2546.434854 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45589 -37.42941 -34.62074 -32.81141 -32.18370 -31.18701 -27.47891 -26.75198 -24.66429 -24.00802 -22.51222 -20.81752 -20.54368 -18.35250 -17.49396 -16.78551 -16.53007 -15.68544 -15.41577 -15.07543 -15.03123 -14.61975 -14.32949 -14.27318 -13.90589 -13.74864 -13.54909 -13.18991 -12.82982 -12.79741 -12.53844 -12.39149 -12.18187 -12.02009 -11.65576 -11.56538 -11.42997 -11.02658 -10.93931 -10.58482 -10.35654 -10.13994 -8.95731 -8.20718 -7.97931 -5.96568 1.25997 1.42541 1.46807 1.55408 2.02892 2.54396 3.04934 3.39574 3.95760 3.98171 4.02720 4.15848 4.26023 4.28990 4.41447 4.51477 4.54870 4.58714 4.63073 4.72180 4.75185 4.81467 4.92023 4.96836 5.00532 5.12356 5.15406 5.23069 5.28858 5.39024 5.47017 5.56859 5.59114 5.66492 6.02224 6.35331 6.47966 6.56355 7.03995 7.65219 9.11153 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.009577 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.573722 B = 2922.900421 C = 3751.387474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.014 3.986 3 Si 0.935 3.065 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.450 4.450 8 H 0.058 0.942 9 C 0.046 3.954 10 H 0.020 0.980 11 C -0.049 4.049 12 S -0.310 6.310 13 C -0.062 4.062 14 C -0.109 4.109 15 C 0.102 3.898 16 H 0.010 0.990 17 N -0.530 5.530 18 C 0.047 3.953 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.112 4.112 22 C 0.058 3.942 23 H 0.253 0.747 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -11.455 3.841 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.488 4.488 8 H 0.076 0.924 9 C 0.026 3.974 10 H 0.038 0.962 11 C -0.198 4.198 12 S -0.085 6.085 13 C -0.210 4.210 14 C -0.148 4.148 15 C -0.006 4.006 16 H 0.028 0.972 17 N -0.254 5.254 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.070 4.070 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.363 -10.214 3.030 12.951 hybrid contribution -0.668 -0.124 0.757 1.017 sum 6.695 -10.338 3.787 12.885 Atomic orbital electron populations 1.69968 1.06837 1.26211 1.54209 1.25425 0.95264 1.01308 0.96254 0.85834 0.79608 0.81622 0.76550 1.19262 1.21929 1.21685 1.21084 0.92558 0.89856 1.45322 0.92403 1.18894 0.92893 0.93797 0.91829 0.96200 1.23448 0.98695 1.01548 0.96129 1.86284 1.32346 1.55522 1.34319 1.23321 0.99269 0.98174 1.00253 1.21792 0.97602 1.03460 0.91915 1.21419 0.95089 0.95547 0.88542 0.97176 1.61712 1.14807 1.46432 1.02471 1.22283 0.95253 0.91511 0.98965 1.21567 0.97770 1.02346 0.93227 1.21547 0.96257 0.98089 0.99189 1.21541 0.98897 0.99685 0.94818 1.22037 0.93681 0.98554 0.92695 0.93834 0.93335 0.89393 0.86696 0.89936 0.90929 0.89689 0.95541 0.90013 0.92274 0.89622 0.90504 0.91916 0.92699 0.90976 0.92658 0.95998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.63 11.69 21.45 0.25 -53.38 16 2 C 0.01 0.75 5.33 84.66 0.45 1.20 16 3 Si 0.94 45.28 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.45 -23.45 6.72 25.60 0.17 -23.28 16 8 H 0.06 3.08 5.85 -2.91 -0.02 3.07 16 9 C 0.05 2.16 1.82 -11.65 -0.02 2.13 16 10 H 0.02 1.07 5.66 -2.39 -0.01 1.05 16 11 C -0.05 -2.29 5.78 72.01 0.42 -1.87 16 12 S -0.31 -13.21 21.44 -56.49 -1.21 -14.42 16 13 C -0.06 -2.02 6.45 72.02 0.46 -1.55 16 14 C -0.11 -3.79 4.86 30.49 0.15 -3.64 16 15 C 0.10 3.94 1.40 44.64 0.06 4.00 16 16 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 17 N -0.53 -18.92 4.37 -872.75 -3.81 -22.73 16 18 C 0.05 1.31 5.17 86.33 0.45 1.76 16 19 C -0.11 -2.60 6.09 30.65 0.19 -2.41 16 20 C -0.11 -2.56 6.00 30.68 0.18 -2.38 16 21 C -0.11 -3.20 6.09 30.65 0.19 -3.01 16 22 C 0.06 2.04 5.20 86.33 0.45 2.49 16 23 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 4.73 6.51 -2.39 -0.02 4.72 16 26 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.97 5.67 -2.39 -0.01 2.95 16 29 H 0.09 2.42 5.62 -2.39 -0.01 2.41 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.08 2.14 5.68 -2.39 -0.01 2.13 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.34 5.72 -2.39 -0.01 2.33 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -59.13 295.91 1.42 -57.72 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.02 Total: 12.07 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.15 Total: -26.55 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -3.56 Total: -76.11 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -13.21 SS G_CDS: -1.21 Total: -14.42 kcal Total: -59.13 1.42 -57.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.338 kcal (2) G-P(sol) polarization free energy of solvation -59.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds