Wall clock time and date at job start Mon Mar 30 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48500 * 109.46907 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47629 * 119.99415 * 3 2 1 6 6 H 1.48497 * 109.47101 * 239.99783 * 3 2 1 7 7 C 1.37877 * 119.99981 * 179.71479 * 2 1 3 8 8 H 1.08000 * 120.00196 * 182.64472 * 7 2 1 9 9 C 1.50700 * 120.00292 * 2.64788 * 7 2 1 10 10 H 1.09010 * 109.38495 * 331.43977 * 9 7 2 11 11 C 1.53093 * 109.39294 * 91.24051 * 9 7 2 12 12 S 1.81761 * 108.83451 * 183.25652 * 11 9 7 13 13 C 1.81742 * 102.16066 * 306.60135 * 12 11 9 14 14 C 1.53098 * 108.84019 * 53.31118 * 13 12 11 15 15 C 1.52570 * 109.95789 * 296.97606 * 14 13 12 16 16 H 1.08998 * 109.23154 * 310.35510 * 15 14 13 17 17 N 1.46905 * 109.22702 * 190.99719 * 15 14 13 18 18 C 1.46844 * 111.00170 * 73.19164 * 17 15 14 19 19 C 1.53039 * 109.52576 * 174.16607 * 18 17 15 20 20 C 1.53115 * 109.28039 * 59.17442 * 19 18 17 21 21 C 1.53116 * 109.16365 * 302.35037 * 20 19 18 22 22 C 1.46852 * 110.99593 * 308.98189 * 17 15 14 23 23 H 0.97003 * 120.00075 * 175.13002 * 1 2 3 24 24 H 1.08998 * 109.57673 * 302.98778 * 11 9 7 25 25 H 1.09000 * 109.57588 * 63.36541 * 11 9 7 26 26 H 1.09004 * 109.57482 * 293.50422 * 13 12 11 27 27 H 1.08998 * 109.57526 * 173.12395 * 13 12 11 28 28 H 1.09003 * 109.38750 * 176.82554 * 14 13 12 29 29 H 1.09008 * 109.38680 * 57.12841 * 14 13 12 30 30 H 1.09004 * 109.45795 * 294.17557 * 18 17 15 31 31 H 1.08996 * 109.46047 * 54.14219 * 18 17 15 32 32 H 1.09002 * 109.49887 * 299.23890 * 19 18 17 33 33 H 1.08996 * 109.50356 * 179.11964 * 19 18 17 34 34 H 1.08997 * 109.52174 * 182.44368 * 20 19 18 35 35 H 1.09004 * 109.52056 * 62.25174 * 20 19 18 36 36 H 1.08997 * 109.50516 * 297.71235 * 21 20 19 37 37 H 1.09000 * 109.50862 * 177.59712 * 21 20 19 38 38 H 1.08998 * 109.46330 * 305.85425 * 22 17 15 39 39 H 1.09002 * 109.46543 * 65.82460 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0059 8 1 3.0836 -1.1944 0.0491 9 6 1.2523 -2.4988 -0.0479 10 1 0.2702 -2.3692 0.4073 11 6 1.0833 -2.9283 -1.5075 12 16 0.0919 -4.4509 -1.5602 13 6 1.0009 -5.5391 -0.4232 14 6 1.1810 -4.8166 0.9145 15 6 2.0298 -3.5639 0.7197 16 1 2.9296 -3.8230 0.1619 17 7 2.4132 -3.0301 2.0336 18 6 3.4382 -3.8713 2.6646 19 6 3.9169 -3.2099 3.9590 20 6 2.7261 -3.0283 4.9043 21 6 1.6528 -2.1895 4.2051 22 6 1.2396 -2.8805 2.9036 23 1 -0.4850 -0.8370 -0.0713 24 1 0.5725 -2.1418 -2.0629 25 1 2.0624 -3.1131 -1.9495 26 1 1.9778 -5.7744 -0.8457 27 1 0.4366 -6.4587 -0.2686 28 1 1.6756 -5.4826 1.6217 29 1 0.2043 -4.5345 1.3078 30 1 3.0155 -4.8500 2.8917 31 1 4.2810 -3.9890 1.9835 32 1 4.3522 -2.2369 3.7310 33 1 4.6664 -3.8420 4.4351 34 1 3.0545 -2.5182 5.8099 35 1 2.3146 -4.0038 5.1633 36 1 2.0524 -1.2005 3.9811 37 1 0.7846 -2.0925 4.8571 38 1 0.4858 -2.2786 2.3962 39 1 0.8273 -3.8639 3.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259324229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:15 Heat of formation + Delta-G solvation = -16.204908 kcal Electronic energy + Delta-G solvation = -18444.484768 eV Core-core repulsion = 15898.057402 eV Total energy + Delta-G solvation = -2546.427366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.17669 -35.92756 -33.16492 -31.40915 -30.39757 -30.01763 -25.79767 -24.53532 -23.15062 -22.63679 -21.76290 -19.80475 -18.67967 -16.89414 -15.84833 -15.61953 -14.46890 -14.29198 -14.13385 -13.71440 -13.66278 -13.29043 -13.25369 -13.01250 -12.37214 -12.11163 -11.95625 -11.74407 -11.50535 -11.28070 -11.00068 -10.72965 -10.52987 -10.43072 -10.23557 -10.14617 -10.00668 -9.92376 -9.49671 -9.11645 -8.41225 -8.28001 -7.40409 -7.07459 -6.26967 -3.94299 2.44719 3.26017 3.48239 3.51201 3.68259 4.48100 4.59247 5.09798 5.18477 5.20804 5.27470 5.36268 5.45079 5.51031 5.65122 5.72207 5.80234 5.91638 5.94001 5.96531 6.01825 6.13187 6.16082 6.18823 6.26206 6.35726 6.41044 6.49001 6.54197 6.59447 6.75206 6.84313 7.05916 7.38128 7.84417 7.91627 8.25577 8.55171 8.94801 9.71583 11.10930 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.012534 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.584896 B = 2233.421570 C = 3847.425069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.021 3.979 3 Si 1.064 2.936 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.039 3.961 10 H 0.049 0.951 11 C -0.047 4.047 12 S -0.332 6.332 13 C -0.063 4.063 14 C -0.155 4.155 15 C 0.098 3.902 16 H 0.061 0.939 17 N -0.496 5.496 18 C 0.053 3.947 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.116 4.116 22 C 0.063 3.937 23 H 0.269 0.731 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -8.242 5.631 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.067 0.933 11 C -0.195 4.195 12 S -0.105 6.105 13 C -0.213 4.213 14 C -0.195 4.195 15 C -0.011 4.011 16 H 0.080 0.920 17 N -0.217 5.217 18 C -0.076 4.076 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.065 4.065 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.775 -6.363 5.023 8.942 hybrid contribution 0.977 -2.355 0.643 2.630 sum 4.751 -8.718 5.666 11.432 Atomic orbital electron populations 1.70811 1.06800 1.30809 1.46827 1.25688 0.96444 1.02303 0.93906 0.83605 0.74915 0.75723 0.76438 1.21157 1.21487 1.21735 1.21595 0.94258 0.89991 1.53019 0.92994 1.19074 0.97314 0.93952 0.87874 0.93291 1.24272 0.98673 0.91771 1.04825 1.86564 1.45348 1.17754 1.60821 1.23155 1.01902 0.99211 0.96984 1.22524 1.02379 0.98820 0.95796 1.21689 0.97008 0.91780 0.90631 0.92037 1.61997 1.10259 1.47663 1.01824 1.22089 0.95843 0.93850 0.95779 1.21546 0.97142 1.01452 0.95037 1.21554 0.96507 0.99549 0.97896 1.21564 0.97794 1.00236 0.95753 1.21988 0.93344 0.97864 0.93255 0.91937 0.88711 0.91672 0.90861 0.89230 0.92419 0.90921 0.96216 0.91659 0.91014 0.92576 0.92521 0.93029 0.90753 0.92458 0.89839 0.96442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 13.62 55.43 0.75 -25.63 16 2 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 3 Si 1.06 24.75 29.90 -169.99 -5.08 19.66 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.55 -14.15 7.55 -34.44 -0.26 -14.41 16 8 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.04 0.88 1.08 -91.94 -0.10 0.78 16 10 H 0.05 1.25 5.22 -51.92 -0.27 0.98 16 11 C -0.05 -1.03 5.71 37.21 0.21 -0.81 16 12 S -0.33 -6.45 22.33 -107.50 -2.40 -8.85 16 13 C -0.06 -1.03 6.45 37.21 0.24 -0.79 16 14 C -0.15 -2.64 3.96 -26.90 -0.11 -2.74 16 15 C 0.10 1.91 1.47 -68.14 -0.10 1.81 16 16 H 0.06 1.23 7.83 -51.93 -0.41 0.83 16 17 N -0.50 -9.44 3.78 -227.20 -0.86 -10.30 16 18 C 0.05 0.84 5.19 -3.83 -0.02 0.82 16 19 C -0.11 -1.61 6.09 -26.65 -0.16 -1.78 16 20 C -0.12 -1.61 6.00 -26.61 -0.16 -1.77 16 21 C -0.12 -1.88 6.09 -26.65 -0.16 -2.05 16 22 C 0.06 1.17 4.50 -3.83 -0.02 1.16 16 23 H 0.27 7.77 6.56 -40.82 -0.27 7.51 16 24 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 29 H 0.07 1.34 7.02 -51.92 -0.36 0.97 16 30 H 0.02 0.30 6.76 -51.93 -0.35 -0.05 16 31 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.83 6.62 -51.93 -0.34 1.49 16 39 H 0.02 0.30 6.79 -51.93 -0.35 -0.05 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -27.21 301.06 -10.33 -37.54 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.54 Total: 2.37 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.73 Total: -19.33 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.10 Total: -35.92 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -2.40 Total: -8.85 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.21 -10.33 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.333 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds