Wall clock time and date at job start Mon Mar 30 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48500 * 109.46907 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47629 * 119.99415 * 3 2 1 6 6 H 1.48497 * 109.47101 * 239.99783 * 3 2 1 7 7 C 1.37877 * 119.99981 * 179.71479 * 2 1 3 8 8 H 1.08000 * 120.00196 * 182.64472 * 7 2 1 9 9 C 1.50700 * 120.00292 * 2.64788 * 7 2 1 10 10 H 1.09010 * 109.38495 * 331.43977 * 9 7 2 11 11 C 1.53093 * 109.39294 * 91.24051 * 9 7 2 12 12 S 1.81761 * 108.83451 * 183.25652 * 11 9 7 13 13 C 1.81742 * 102.16066 * 306.60135 * 12 11 9 14 14 C 1.53098 * 108.84019 * 53.31118 * 13 12 11 15 15 C 1.52570 * 109.95789 * 296.97606 * 14 13 12 16 16 H 1.08998 * 109.23154 * 310.35510 * 15 14 13 17 17 N 1.46905 * 109.22702 * 190.99719 * 15 14 13 18 18 C 1.46844 * 111.00170 * 73.19164 * 17 15 14 19 19 C 1.53039 * 109.52576 * 174.16607 * 18 17 15 20 20 C 1.53115 * 109.28039 * 59.17442 * 19 18 17 21 21 C 1.53116 * 109.16365 * 302.35037 * 20 19 18 22 22 C 1.46852 * 110.99593 * 308.98189 * 17 15 14 23 23 H 0.97003 * 120.00075 * 175.13002 * 1 2 3 24 24 H 1.08998 * 109.57673 * 302.98778 * 11 9 7 25 25 H 1.09000 * 109.57588 * 63.36541 * 11 9 7 26 26 H 1.09004 * 109.57482 * 293.50422 * 13 12 11 27 27 H 1.08998 * 109.57526 * 173.12395 * 13 12 11 28 28 H 1.09003 * 109.38750 * 176.82554 * 14 13 12 29 29 H 1.09008 * 109.38680 * 57.12841 * 14 13 12 30 30 H 1.09004 * 109.45795 * 294.17557 * 18 17 15 31 31 H 1.08996 * 109.46047 * 54.14219 * 18 17 15 32 32 H 1.09002 * 109.49887 * 299.23890 * 19 18 17 33 33 H 1.08996 * 109.50356 * 179.11964 * 19 18 17 34 34 H 1.08997 * 109.52174 * 182.44368 * 20 19 18 35 35 H 1.09004 * 109.52056 * 62.25174 * 20 19 18 36 36 H 1.08997 * 109.50516 * 297.71235 * 21 20 19 37 37 H 1.09000 * 109.50862 * 177.59712 * 21 20 19 38 38 H 1.08998 * 109.46330 * 305.85425 * 22 17 15 39 39 H 1.09002 * 109.46543 * 65.82460 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0059 8 1 3.0836 -1.1944 0.0491 9 6 1.2523 -2.4988 -0.0479 10 1 0.2702 -2.3692 0.4073 11 6 1.0833 -2.9283 -1.5075 12 16 0.0919 -4.4509 -1.5602 13 6 1.0009 -5.5391 -0.4232 14 6 1.1810 -4.8166 0.9145 15 6 2.0298 -3.5639 0.7197 16 1 2.9296 -3.8230 0.1619 17 7 2.4132 -3.0301 2.0336 18 6 3.4382 -3.8713 2.6646 19 6 3.9169 -3.2099 3.9590 20 6 2.7261 -3.0283 4.9043 21 6 1.6528 -2.1895 4.2051 22 6 1.2396 -2.8805 2.9036 23 1 -0.4850 -0.8370 -0.0713 24 1 0.5725 -2.1418 -2.0629 25 1 2.0624 -3.1131 -1.9495 26 1 1.9778 -5.7744 -0.8457 27 1 0.4366 -6.4587 -0.2686 28 1 1.6756 -5.4826 1.6217 29 1 0.2043 -4.5345 1.3078 30 1 3.0155 -4.8500 2.8917 31 1 4.2810 -3.9890 1.9835 32 1 4.3522 -2.2369 3.7310 33 1 4.6664 -3.8420 4.4351 34 1 3.0545 -2.5182 5.8099 35 1 2.3146 -4.0038 5.1633 36 1 2.0524 -1.2005 3.9811 37 1 0.7846 -2.0925 4.8571 38 1 0.4858 -2.2786 2.3962 39 1 0.8273 -3.8639 3.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259324229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:15 Heat of formation + Delta-G solvation = -30.684502 kcal Electronic energy + Delta-G solvation = -18445.112650 eV Core-core repulsion = 15898.057402 eV Total energy + Delta-G solvation = -2547.055248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62636 -37.42806 -34.98839 -32.76409 -31.87341 -31.64627 -27.35285 -26.45628 -24.51246 -23.98094 -23.39389 -21.32394 -20.08278 -18.77623 -17.39551 -17.18026 -15.99271 -15.78503 -15.60997 -15.45428 -14.97615 -14.78205 -14.67461 -14.41924 -13.86947 -13.77351 -13.55005 -13.21998 -13.04962 -12.80379 -12.55323 -12.41823 -12.08600 -11.96609 -11.87351 -11.58237 -11.50392 -11.21542 -11.10186 -10.76272 -10.39883 -10.24619 -8.83702 -8.66758 -8.43171 -6.09034 0.92167 1.55617 1.59687 1.69439 1.80828 2.64814 3.06626 3.38431 3.72299 3.93263 3.96981 4.00005 4.05996 4.13866 4.30410 4.36803 4.44052 4.49527 4.51212 4.63187 4.65735 4.68184 4.74655 4.86936 4.90259 4.99304 5.03032 5.12420 5.13308 5.26032 5.30346 5.38725 5.53476 5.54043 6.13934 6.38540 6.43616 6.52642 6.82155 7.63242 8.95107 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.012534 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.584896 B = 2233.421570 C = 3847.425069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.028 4.028 3 Si 1.103 2.897 4 H -0.293 1.293 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.041 0.959 9 C 0.041 3.959 10 H 0.016 0.984 11 C -0.043 4.043 12 S -0.340 6.340 13 C -0.054 4.054 14 C -0.144 4.144 15 C 0.103 3.897 16 H 0.060 0.940 17 N -0.521 5.521 18 C 0.052 3.948 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.115 4.115 22 C 0.071 3.929 23 H 0.255 0.745 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -10.444 6.943 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.226 4.226 3 Si 0.927 3.073 4 H -0.219 1.219 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.060 0.940 9 C 0.021 3.979 10 H 0.034 0.966 11 C -0.192 4.192 12 S -0.113 6.113 13 C -0.202 4.202 14 C -0.184 4.184 15 C -0.006 4.006 16 H 0.078 0.922 17 N -0.244 5.244 18 C -0.075 4.075 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.057 4.057 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.448 -8.582 6.338 11.979 hybrid contribution 0.465 -1.755 0.242 1.832 sum 5.913 -10.337 6.580 13.605 Atomic orbital electron populations 1.70916 1.07767 1.29977 1.49856 1.26794 0.96463 1.05503 0.93794 0.83092 0.74171 0.72569 0.77425 1.21882 1.20319 1.20025 1.21789 0.93724 0.91452 1.51248 0.94043 1.18958 0.95781 0.94342 0.88844 0.96551 1.23825 0.99031 0.92857 1.03442 1.86558 1.45867 1.16591 1.62306 1.23310 1.02768 0.98898 0.95252 1.22364 1.01169 0.97970 0.96912 1.21483 0.96637 0.91726 0.90774 0.92167 1.61895 1.11067 1.49491 1.01938 1.22179 0.94786 0.94165 0.96413 1.21559 0.97905 1.01003 0.94468 1.21518 0.95244 0.99905 0.98056 1.21552 0.99340 0.99153 0.95220 1.21827 0.92361 0.97875 0.93604 0.93413 0.91803 0.91131 0.89036 0.86195 0.89559 0.92547 0.94508 0.91469 0.92857 0.89409 0.90612 0.91371 0.93540 0.91235 0.94647 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 13.62 21.45 0.29 -56.92 16 2 C -0.03 -1.56 5.46 84.66 0.46 -1.10 16 3 Si 1.10 51.02 29.90 68.60 2.05 53.07 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.54 -28.85 7.55 25.60 0.19 -28.66 16 8 H 0.04 2.26 7.81 -2.91 -0.02 2.23 16 9 C 0.04 1.96 1.08 -11.65 -0.01 1.94 16 10 H 0.02 0.89 5.22 -2.38 -0.01 0.87 16 11 C -0.04 -1.91 5.71 72.01 0.41 -1.50 16 12 S -0.34 -13.00 22.33 -56.49 -1.26 -14.26 16 13 C -0.05 -1.58 6.45 72.02 0.46 -1.11 16 14 C -0.14 -4.57 3.96 30.48 0.12 -4.44 16 15 C 0.10 3.95 1.47 44.63 0.07 4.01 16 16 H 0.06 2.32 7.83 -2.39 -0.02 2.30 16 17 N -0.52 -19.47 3.78 -872.74 -3.30 -22.77 16 18 C 0.05 1.51 5.19 86.33 0.45 1.96 16 19 C -0.11 -2.81 6.09 30.65 0.19 -2.63 16 20 C -0.11 -2.67 6.00 30.67 0.18 -2.49 16 21 C -0.11 -3.66 6.09 30.65 0.19 -3.47 16 22 C 0.07 2.64 4.50 86.33 0.39 3.03 16 23 H 0.26 15.73 6.56 -92.71 -0.61 15.12 16 24 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 25 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.09 2.31 6.55 -2.39 -0.02 2.29 16 29 H 0.06 2.00 7.02 -2.38 -0.02 1.99 16 30 H 0.04 0.95 6.76 -2.38 -0.02 0.94 16 31 H 0.07 1.91 7.97 -2.39 -0.02 1.89 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.63 6.62 -2.39 -0.02 1.62 16 39 H 0.03 1.08 6.79 -2.39 -0.02 1.06 16 Total: -1.00 -61.50 301.06 2.05 -59.45 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.17 Total: 15.89 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.10 Total: -34.46 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.00 Total: -79.69 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Atomic # 16 Polarization: -13.00 SS G_CDS: -1.26 Total: -14.26 kcal Total: -61.50 2.05 -59.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.770 kcal (2) G-P(sol) polarization free energy of solvation -61.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds