Wall clock time and date at job start Mon Mar 30 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47172 * 239.99972 * 3 2 1 5 5 H 1.48499 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47126 * 120.00246 * 3 2 1 7 7 C 1.37874 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99915 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.30391 * 60.24524 * 9 7 2 11 11 C 1.53089 * 109.38928 * 300.49825 * 9 7 2 12 12 S 1.81751 * 108.83949 * 176.82676 * 11 9 7 13 13 C 1.81747 * 102.22254 * 53.26386 * 12 11 9 14 14 C 1.53101 * 108.83848 * 306.73315 * 13 12 11 15 15 C 1.52575 * 109.38947 * 179.97438 * 9 7 2 16 16 H 1.09003 * 109.19050 * 70.53013 * 15 9 7 17 17 N 1.46902 * 109.23258 * 311.14765 * 15 9 7 18 18 C 1.46846 * 110.99617 * 297.97226 * 17 15 9 19 19 C 1.53040 * 109.51964 * 174.15808 * 18 17 15 20 20 C 1.53119 * 109.28089 * 59.17912 * 19 18 17 21 21 C 1.53124 * 109.15841 * 302.34776 * 20 19 18 22 22 C 1.46846 * 111.00204 * 173.76121 * 17 15 9 23 23 H 0.97004 * 119.99886 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.58271 * 57.01943 * 11 9 7 25 25 H 1.09007 * 109.68090 * 296.69091 * 11 9 7 26 26 H 1.09004 * 109.57684 * 186.92975 * 13 12 11 27 27 H 1.09003 * 109.68323 * 66.60156 * 13 12 11 28 28 H 1.09002 * 109.38930 * 302.87867 * 14 13 12 29 29 H 1.08999 * 109.38962 * 183.17548 * 14 13 12 30 30 H 1.08996 * 109.46231 * 294.17554 * 18 17 15 31 31 H 1.09004 * 109.46418 * 54.14394 * 18 17 15 32 32 H 1.09004 * 109.50602 * 299.23671 * 19 18 17 33 33 H 1.08998 * 109.50366 * 179.12192 * 19 18 17 34 34 H 1.08998 * 109.52394 * 182.44064 * 20 19 18 35 35 H 1.08999 * 109.51878 * 62.24548 * 20 19 18 36 36 H 1.08999 * 109.49853 * 297.70868 * 21 20 19 37 37 H 1.08996 * 109.49839 * 177.59898 * 21 20 19 38 38 H 1.09001 * 109.45990 * 305.85570 * 22 17 15 39 39 H 1.08999 * 109.46398 * 65.83493 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6291 -2.5553 -0.8951 11 6 0.3618 -2.5737 1.2422 12 16 -0.6094 -4.1086 1.1782 13 6 0.6781 -5.3689 0.9385 14 6 1.5317 -4.9796 -0.2714 15 6 2.2442 -3.6574 -0.0027 16 1 2.7379 -3.7069 0.9678 17 7 3.2520 -3.4297 -1.0470 18 6 2.6315 -3.3892 -2.3773 19 6 3.6836 -3.0071 -3.4209 20 6 4.8167 -4.0366 -3.3969 21 6 5.4138 -4.0940 -1.9881 22 6 4.3116 -4.4446 -0.9860 23 1 -0.4850 0.8401 0.0004 24 1 -0.3110 -1.7165 1.2621 25 1 0.9827 -2.5716 2.1381 26 1 0.2119 -6.3379 0.7599 27 1 1.3073 -5.4244 1.8268 28 1 0.8914 -4.8738 -1.1471 29 1 2.2716 -5.7580 -0.4577 30 1 2.2217 -4.3704 -2.6169 31 1 1.8302 -2.6502 -2.3819 32 1 4.0839 -2.0199 -3.1897 33 1 3.2262 -2.9923 -4.4102 34 1 5.5892 -3.7448 -4.1084 35 1 4.4237 -5.0170 -3.6662 36 1 5.8413 -3.1240 -1.7343 37 1 6.1927 -4.8558 -1.9538 38 1 4.7306 -4.4722 0.0199 39 1 3.8941 -5.4209 -1.2324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259324231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:17 Heat of formation + Delta-G solvation = -12.254915 kcal Electronic energy + Delta-G solvation = -18362.696937 eV Core-core repulsion = 15816.440856 eV Total energy + Delta-G solvation = -2546.256081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15812 -35.79574 -33.05233 -31.34263 -30.47934 -29.88301 -25.66030 -25.03297 -23.03328 -22.72378 -21.60718 -19.61332 -18.50356 -16.54628 -15.75046 -15.47489 -14.55731 -14.40922 -14.14407 -13.78597 -13.62953 -13.24144 -13.08131 -12.65395 -12.34288 -12.26002 -11.87188 -11.71443 -11.26803 -11.04455 -10.90838 -10.76491 -10.51707 -10.45045 -10.27463 -10.18612 -9.96012 -9.87484 -9.51722 -9.13957 -8.52346 -8.35121 -7.43346 -6.86374 -5.97587 -4.01190 2.66747 3.34294 3.39932 3.42731 3.58329 4.45940 4.52958 5.12951 5.20127 5.24614 5.30396 5.35077 5.47757 5.57388 5.69910 5.77402 5.89673 5.92206 5.97657 6.04785 6.09980 6.18471 6.19267 6.26768 6.37214 6.46623 6.49006 6.64950 6.67041 6.75168 6.78490 6.96685 7.48892 7.69296 7.86661 7.95598 8.06252 8.42625 9.07122 9.62503 11.07973 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.011412 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.779187 B = 2452.924924 C = 3996.405125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.481 4.481 8 H 0.072 0.928 9 C 0.058 3.942 10 H 0.039 0.961 11 C -0.046 4.046 12 S -0.335 6.335 13 C -0.067 4.067 14 C -0.154 4.154 15 C 0.091 3.909 16 H 0.065 0.935 17 N -0.504 5.504 18 C 0.059 3.941 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.050 3.950 23 H 0.261 0.739 24 H 0.136 0.864 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -8.700 -2.913 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.521 4.521 8 H 0.090 0.910 9 C 0.038 3.962 10 H 0.057 0.943 11 C -0.194 4.194 12 S -0.108 6.108 13 C -0.216 4.216 14 C -0.194 4.194 15 C -0.017 4.017 16 H 0.083 0.917 17 N -0.226 5.226 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.078 4.078 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.297 -8.265 -2.724 10.188 hybrid contribution 1.307 0.194 -0.163 1.332 sum 6.604 -8.071 -2.887 10.821 Atomic orbital electron populations 1.69802 1.05858 1.26608 1.51449 1.25018 0.94799 0.99165 0.95545 0.86628 0.79462 0.83131 0.78578 1.20321 1.21671 1.20484 1.21130 0.93708 0.88834 1.48476 0.90953 1.18867 0.91537 0.92366 0.93412 0.94274 1.24033 1.00718 0.92901 1.01710 1.86568 1.20172 1.07853 1.96256 1.23146 0.98694 0.99227 1.00556 1.22477 0.99177 0.99713 0.98079 1.21794 0.92606 0.93289 0.94012 0.91676 1.62051 1.11590 1.45534 1.03412 1.22047 0.97079 0.99518 0.88217 1.21578 0.96138 0.99678 0.97990 1.21564 0.98151 0.99107 0.96774 1.21549 0.97115 1.01773 0.94753 1.22100 0.93470 0.93205 0.99014 0.92918 0.84632 0.92719 0.89566 0.91059 0.91072 0.92446 0.96340 0.88969 0.90949 0.92426 0.92616 0.92951 0.91176 0.92584 0.91620 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 11.26 55.43 0.62 -24.06 16 2 C 0.06 1.45 5.30 -17.82 -0.09 1.36 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.48 -12.30 7.82 -34.44 -0.27 -12.57 16 8 H 0.07 1.89 7.26 -52.49 -0.38 1.51 16 9 C 0.06 1.35 1.01 -91.94 -0.09 1.26 16 10 H 0.04 1.02 6.79 -51.93 -0.35 0.66 16 11 C -0.05 -1.06 5.54 37.20 0.21 -0.85 16 12 S -0.34 -6.88 22.33 -107.50 -2.40 -9.28 16 13 C -0.07 -1.13 6.46 37.21 0.24 -0.89 16 14 C -0.15 -2.64 4.22 -26.90 -0.11 -2.76 16 15 C 0.09 1.78 1.51 -68.15 -0.10 1.68 16 16 H 0.07 1.32 8.00 -51.93 -0.42 0.90 16 17 N -0.50 -9.25 3.55 -227.21 -0.81 -10.05 16 18 C 0.06 1.05 4.58 -3.83 -0.02 1.04 16 19 C -0.12 -1.78 6.09 -26.65 -0.16 -1.94 16 20 C -0.12 -1.55 6.00 -26.61 -0.16 -1.71 16 21 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 22 C 0.05 0.77 5.04 -3.84 -0.02 0.75 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.14 3.55 5.96 -51.93 -0.31 3.24 16 25 H 0.05 1.24 8.14 -51.92 -0.42 0.82 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.31 7.03 -51.93 -0.37 0.94 16 29 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 30 H 0.02 0.32 6.85 -51.93 -0.36 -0.04 16 31 H 0.09 1.93 6.16 -51.93 -0.32 1.61 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 39 H 0.02 0.35 6.48 -51.93 -0.34 0.01 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -26.16 297.98 -10.37 -36.53 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.51 Total: 2.77 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.75 Total: -16.34 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.18 Total: -34.12 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -2.40 Total: -9.28 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.16 -10.37 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.277 kcal (2) G-P(sol) polarization free energy of solvation -26.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds