Wall clock time and date at job start Mon Mar 30 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47172 * 239.99972 * 3 2 1 5 5 H 1.48499 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47126 * 120.00246 * 3 2 1 7 7 C 1.37874 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99915 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.30391 * 60.24524 * 9 7 2 11 11 C 1.53089 * 109.38928 * 300.49825 * 9 7 2 12 12 S 1.81751 * 108.83949 * 176.82676 * 11 9 7 13 13 C 1.81747 * 102.22254 * 53.26386 * 12 11 9 14 14 C 1.53101 * 108.83848 * 306.73315 * 13 12 11 15 15 C 1.52575 * 109.38947 * 179.97438 * 9 7 2 16 16 H 1.09003 * 109.19050 * 70.53013 * 15 9 7 17 17 N 1.46902 * 109.23258 * 311.14765 * 15 9 7 18 18 C 1.46846 * 110.99617 * 297.97226 * 17 15 9 19 19 C 1.53040 * 109.51964 * 174.15808 * 18 17 15 20 20 C 1.53119 * 109.28089 * 59.17912 * 19 18 17 21 21 C 1.53124 * 109.15841 * 302.34776 * 20 19 18 22 22 C 1.46846 * 111.00204 * 173.76121 * 17 15 9 23 23 H 0.97004 * 119.99886 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.58271 * 57.01943 * 11 9 7 25 25 H 1.09007 * 109.68090 * 296.69091 * 11 9 7 26 26 H 1.09004 * 109.57684 * 186.92975 * 13 12 11 27 27 H 1.09003 * 109.68323 * 66.60156 * 13 12 11 28 28 H 1.09002 * 109.38930 * 302.87867 * 14 13 12 29 29 H 1.08999 * 109.38962 * 183.17548 * 14 13 12 30 30 H 1.08996 * 109.46231 * 294.17554 * 18 17 15 31 31 H 1.09004 * 109.46418 * 54.14394 * 18 17 15 32 32 H 1.09004 * 109.50602 * 299.23671 * 19 18 17 33 33 H 1.08998 * 109.50366 * 179.12192 * 19 18 17 34 34 H 1.08998 * 109.52394 * 182.44064 * 20 19 18 35 35 H 1.08999 * 109.51878 * 62.24548 * 20 19 18 36 36 H 1.08999 * 109.49853 * 297.70868 * 21 20 19 37 37 H 1.08996 * 109.49839 * 177.59898 * 21 20 19 38 38 H 1.09001 * 109.45990 * 305.85570 * 22 17 15 39 39 H 1.08999 * 109.46398 * 65.83493 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6291 -2.5553 -0.8951 11 6 0.3618 -2.5737 1.2422 12 16 -0.6094 -4.1086 1.1782 13 6 0.6781 -5.3689 0.9385 14 6 1.5317 -4.9796 -0.2714 15 6 2.2442 -3.6574 -0.0027 16 1 2.7379 -3.7069 0.9678 17 7 3.2520 -3.4297 -1.0470 18 6 2.6315 -3.3892 -2.3773 19 6 3.6836 -3.0071 -3.4209 20 6 4.8167 -4.0366 -3.3969 21 6 5.4138 -4.0940 -1.9881 22 6 4.3116 -4.4446 -0.9860 23 1 -0.4850 0.8401 0.0004 24 1 -0.3110 -1.7165 1.2621 25 1 0.9827 -2.5716 2.1381 26 1 0.2119 -6.3379 0.7599 27 1 1.3073 -5.4244 1.8268 28 1 0.8914 -4.8738 -1.1471 29 1 2.2716 -5.7580 -0.4577 30 1 2.2217 -4.3704 -2.6169 31 1 1.8302 -2.6502 -2.3819 32 1 4.0839 -2.0199 -3.1897 33 1 3.2262 -2.9923 -4.4102 34 1 5.5892 -3.7448 -4.1084 35 1 4.4237 -5.0170 -3.6662 36 1 5.8413 -3.1240 -1.7343 37 1 6.1927 -4.8558 -1.9538 38 1 4.7306 -4.4722 0.0199 39 1 3.8941 -5.4209 -1.2324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259324231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:17 Heat of formation + Delta-G solvation = -25.581762 kcal Electronic energy + Delta-G solvation = -18363.274833 eV Core-core repulsion = 15816.440856 eV Total energy + Delta-G solvation = -2546.833977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56823 -37.25680 -34.87673 -32.67151 -31.96311 -31.46744 -27.34013 -26.80844 -24.37355 -24.04048 -23.16224 -21.06966 -19.91819 -18.42477 -17.26071 -17.15025 -16.41493 -15.71974 -15.44942 -15.32418 -14.89357 -14.70179 -14.46846 -14.24393 -14.11147 -13.69189 -13.31639 -13.00326 -12.86796 -12.73064 -12.64989 -12.39915 -12.12373 -12.05986 -11.80597 -11.56500 -11.51718 -11.12982 -11.05936 -10.87386 -10.38073 -10.27613 -8.83283 -8.53704 -8.00808 -6.10336 1.09815 1.44781 1.45447 1.52676 1.87292 2.49483 3.12623 3.31585 3.83362 4.01450 4.04207 4.08994 4.16191 4.20872 4.43331 4.45855 4.55196 4.60985 4.70780 4.73182 4.75809 4.79666 4.92270 4.97615 5.01146 5.10895 5.12508 5.20529 5.23169 5.31030 5.45094 5.56632 5.61530 5.82852 5.97511 6.33926 6.50382 6.59946 7.00942 7.55856 9.02382 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.011412 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.779187 B = 2452.924924 C = 3996.405125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.482 4.482 8 H 0.065 0.935 9 C 0.066 3.934 10 H 0.004 0.996 11 C -0.042 4.042 12 S -0.352 6.352 13 C -0.056 4.056 14 C -0.143 4.143 15 C 0.098 3.902 16 H 0.060 0.940 17 N -0.524 5.524 18 C 0.066 3.934 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.111 4.111 22 C 0.050 3.950 23 H 0.257 0.743 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 -10.854 -3.315 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.523 4.523 8 H 0.083 0.917 9 C 0.045 3.955 10 H 0.022 0.978 11 C -0.191 4.191 12 S -0.125 6.125 13 C -0.204 4.204 14 C -0.184 4.184 15 C -0.011 4.011 16 H 0.079 0.921 17 N -0.247 5.247 18 C -0.062 4.062 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.078 4.078 23 H 0.066 0.934 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.233 -10.426 -3.128 13.069 hybrid contribution 0.706 0.810 -0.050 1.076 sum 7.939 -9.617 -3.178 12.869 Atomic orbital electron populations 1.69953 1.07016 1.26810 1.52759 1.25660 0.95405 1.01971 0.95747 0.85777 0.78312 0.79914 0.78569 1.20126 1.21809 1.19957 1.21339 0.93415 0.90162 1.47351 0.91719 1.18686 0.91736 0.93289 0.91772 0.97806 1.23654 1.00277 0.93688 1.01436 1.86536 1.21914 1.07689 1.96382 1.23287 0.97527 0.98517 1.01086 1.22338 0.99380 0.99044 0.97615 1.21547 0.92167 0.92962 0.94405 0.92147 1.61967 1.11946 1.47656 1.03123 1.21903 0.96763 0.98636 0.88938 1.21560 0.96483 0.99477 0.97683 1.21533 0.97518 0.98751 0.97124 1.21557 0.97093 1.01976 0.94285 1.22199 0.92837 0.92795 0.99975 0.93358 0.88116 0.92975 0.86522 0.89435 0.92466 0.89403 0.95353 0.93372 0.93077 0.91155 0.90700 0.91630 0.92622 0.89638 0.91327 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.04 11.26 21.45 0.24 -52.80 16 2 C 0.01 0.52 5.30 84.65 0.45 0.97 16 3 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.48 -25.43 7.82 25.60 0.20 -25.23 16 8 H 0.06 3.45 7.26 -2.91 -0.02 3.43 16 9 C 0.07 3.13 1.01 -11.65 -0.01 3.12 16 10 H 0.00 0.21 6.79 -2.39 -0.02 0.20 16 11 C -0.04 -2.00 5.54 72.01 0.40 -1.61 16 12 S -0.35 -14.35 22.33 -56.49 -1.26 -15.61 16 13 C -0.06 -1.72 6.46 72.02 0.46 -1.25 16 14 C -0.14 -4.60 4.22 30.49 0.13 -4.47 16 15 C 0.10 3.76 1.51 44.63 0.07 3.82 16 16 H 0.06 2.37 8.00 -2.39 -0.02 2.35 16 17 N -0.52 -18.80 3.55 -872.77 -3.10 -21.90 16 18 C 0.07 2.32 4.58 86.33 0.40 2.71 16 19 C -0.11 -3.38 6.09 30.65 0.19 -3.19 16 20 C -0.11 -2.57 6.00 30.68 0.18 -2.38 16 21 C -0.11 -2.64 6.09 30.65 0.19 -2.46 16 22 C 0.05 1.37 5.04 86.32 0.44 1.81 16 23 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 24 H 0.10 5.55 5.96 -2.39 -0.01 5.53 16 25 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 26 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.06 2.02 7.03 -2.39 -0.02 2.00 16 29 H 0.09 2.34 6.14 -2.39 -0.01 2.33 16 30 H 0.03 0.93 6.85 -2.39 -0.02 0.92 16 31 H 0.05 2.11 6.16 -2.38 -0.01 2.10 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 39 H 0.04 0.95 6.48 -2.39 -0.02 0.94 16 Total: -1.00 -58.52 297.98 2.00 -56.51 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.01 Total: 15.91 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.08 Total: -28.16 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -2.86 Total: -74.69 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -14.35 SS G_CDS: -1.26 Total: -15.61 kcal Total: -58.52 2.00 -56.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.933 kcal (2) G-P(sol) polarization free energy of solvation -58.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds