Wall clock time and date at job start Mon Mar 30 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99805 * 2 1 4 4 H 1.48506 * 109.46898 * 270.00089 * 3 2 1 5 5 H 1.48496 * 109.47206 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47156 * 150.00266 * 3 2 1 7 7 C 1.37874 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00318 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47345 * 185.19991 * 9 7 2 11 11 H 1.09001 * 109.45463 * 298.08687 * 10 9 7 12 12 C 1.53040 * 109.45957 * 58.06070 * 10 9 7 13 13 C 1.53118 * 109.27496 * 179.19797 * 12 10 9 14 14 C 1.53122 * 109.16210 * 302.34413 * 13 12 10 15 15 C 1.53036 * 109.27767 * 57.65464 * 14 13 12 16 16 N 1.46842 * 109.52340 * 300.82315 * 15 14 13 17 17 C 1.46907 * 111.00115 * 185.83943 * 16 15 14 18 18 H 1.08994 * 109.60514 * 272.63633 * 17 16 15 19 19 C 1.53854 * 109.60598 * 32.97345 * 17 16 15 20 20 C 1.55040 * 106.94445 * 167.33471 * 19 17 16 21 21 S 1.83458 * 102.08862 * 317.64113 * 20 19 17 22 22 C 1.54273 * 109.61089 * 152.29756 * 17 16 15 23 23 H 0.97002 * 120.00164 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47154 * 65.19750 * 9 7 2 25 25 H 1.09002 * 109.46975 * 305.20260 * 9 7 2 26 26 H 1.08997 * 109.50667 * 59.25775 * 12 10 9 27 27 H 1.08995 * 109.53461 * 299.15600 * 12 10 9 28 28 H 1.09002 * 109.52195 * 182.43991 * 13 12 10 29 29 H 1.08995 * 109.57910 * 62.28152 * 13 12 10 30 30 H 1.08998 * 109.50183 * 297.71742 * 14 13 12 31 31 H 1.08998 * 109.50875 * 177.59832 * 14 13 12 32 32 H 1.09000 * 109.46035 * 180.80540 * 15 14 13 33 33 H 1.09000 * 109.46111 * 60.84080 * 15 14 13 34 34 H 1.08997 * 109.97775 * 286.53376 * 19 17 16 35 35 H 1.09000 * 109.97785 * 47.82054 * 19 17 16 36 36 H 1.09001 * 110.81697 * 199.54533 * 20 19 17 37 37 H 1.09002 * 111.18493 * 75.90505 * 20 19 17 38 38 H 1.09004 * 110.40346 * 330.91935 * 22 17 16 39 39 H 1.08998 * 110.40213 * 93.33633 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6306 -0.1300 11 1 3.6868 -3.2137 0.7279 12 6 3.4714 -3.2526 -1.4155 13 6 4.0004 -4.6830 -1.5515 14 6 5.5313 -4.6552 -1.5482 15 6 6.0218 -3.9924 -0.2589 16 7 5.4893 -2.6265 -0.1760 17 6 6.0502 -1.9119 0.9786 18 1 5.4421 -2.1091 1.8613 19 6 7.4923 -2.3863 1.2285 20 6 8.1301 -1.3867 2.2274 21 16 7.5387 0.2273 1.5862 22 6 6.0687 -0.3964 0.6905 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.7622 0.9324 25 1 3.8745 -0.6021 -0.8403 26 1 3.7944 -2.6621 -2.2728 27 1 2.3823 -3.2697 -1.3750 28 1 3.6460 -5.1150 -2.4874 29 1 3.6453 -5.2849 -0.7150 30 1 5.8868 -4.0867 -2.4076 31 1 5.9141 -5.6743 -1.6018 32 1 7.1113 -3.9581 -0.2600 33 1 5.6776 -4.5692 0.5996 34 1 7.4855 -3.3869 1.6606 35 1 8.0512 -2.3882 0.2927 36 1 9.2180 -1.4436 2.1910 37 1 7.7680 -1.5577 3.2412 38 1 6.1701 -0.2142 -0.3794 39 1 5.1629 0.0741 1.0728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259586153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:33 Heat of formation + Delta-G solvation = -3.962616 kcal Electronic energy + Delta-G solvation = -18123.418730 eV Core-core repulsion = 15577.522229 eV Total energy + Delta-G solvation = -2545.896500 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47282 -35.62292 -33.60831 -31.91030 -31.17202 -28.86124 -27.70157 -24.67503 -23.41686 -22.84804 -20.41391 -19.94453 -19.16637 -17.09757 -16.38768 -16.00932 -14.95873 -14.57488 -14.24839 -14.21875 -13.59886 -13.46677 -13.22689 -12.90332 -12.67572 -12.54681 -12.04632 -11.56783 -11.53988 -11.45419 -11.25083 -10.87761 -10.87021 -10.65474 -10.43049 -10.10646 -10.07237 -9.91963 -9.62574 -9.45060 -8.99506 -8.54466 -7.94621 -7.50945 -6.06956 -4.04762 1.98668 2.53909 3.30359 3.38629 3.39829 4.14661 4.42822 4.67745 4.77941 4.96473 5.10942 5.17096 5.24467 5.28009 5.33136 5.41049 5.54462 5.64639 5.66764 5.79640 5.82367 5.87391 6.00464 6.03674 6.14587 6.20525 6.25884 6.34088 6.37158 6.69059 6.79968 7.00050 7.10489 7.25317 7.48048 7.58566 7.82249 8.49886 8.96744 9.55361 11.05981 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.009885 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.797558 B = 2831.830207 C = 4394.759275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.074 0.926 9 C -0.011 4.011 10 C 0.100 3.900 11 H 0.033 0.967 12 C -0.100 4.100 13 C -0.124 4.124 14 C -0.114 4.114 15 C 0.052 3.948 16 N -0.529 5.529 17 C 0.084 3.916 18 H 0.058 0.942 19 C -0.128 4.128 20 C -0.069 4.069 21 S -0.318 6.318 22 C -0.059 4.059 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.023 0.977 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.776 -7.310 0.888 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.049 4.049 10 C -0.007 4.007 11 H 0.051 0.949 12 C -0.138 4.138 13 C -0.162 4.162 14 C -0.152 4.152 15 C -0.076 4.076 16 N -0.254 5.254 17 C -0.026 4.026 18 H 0.076 0.924 19 C -0.167 4.167 20 C -0.218 4.218 21 S -0.093 6.093 22 C -0.207 4.207 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.190 -5.841 0.592 16.285 hybrid contribution -0.424 -0.586 0.610 0.946 sum 14.766 -6.427 1.202 16.149 Atomic orbital electron populations 1.69901 1.06272 1.26894 1.51003 1.24975 0.94671 0.99006 0.94542 0.86877 0.80384 0.83843 0.78624 1.20215 1.21472 1.18873 1.21056 0.89113 0.94435 1.50944 0.90833 1.19934 0.97029 0.91324 0.96593 1.21666 0.83191 0.99211 0.96681 0.94917 1.21538 1.01366 0.93367 0.97489 1.21668 0.95045 0.98496 1.00995 1.21574 0.96461 0.99196 0.97963 1.22188 0.99327 0.88970 0.97093 1.62136 1.08897 1.14766 1.39628 1.22331 0.94409 0.92554 0.93329 0.92404 1.22782 0.95579 0.98838 0.99460 1.24094 1.03212 0.93155 1.01294 1.87532 1.36410 1.17083 1.68317 1.24693 0.96172 0.96464 1.03324 0.92721 0.96136 0.95905 0.91833 0.89993 0.92435 0.92829 0.91352 0.92381 0.90892 0.95483 0.90132 0.89408 0.88265 0.89363 0.87868 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.54 27.37 -169.99 -4.65 16.89 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.18 5.79 56.52 0.33 -5.85 16 7 C -0.52 -14.07 8.83 -34.44 -0.30 -14.37 16 8 H 0.07 2.15 7.03 -52.49 -0.37 1.78 16 9 C -0.01 -0.25 2.22 -27.88 -0.06 -0.32 16 10 C 0.10 1.91 1.80 -67.72 -0.12 1.79 16 11 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 12 C -0.10 -1.82 5.07 -26.65 -0.14 -1.96 16 13 C -0.12 -1.81 6.00 -26.61 -0.16 -1.97 16 14 C -0.11 -1.46 6.09 -26.65 -0.16 -1.62 16 15 C 0.05 0.69 4.55 -3.84 -0.02 0.68 16 16 N -0.53 -8.53 4.38 -217.44 -0.95 -9.48 16 17 C 0.08 1.28 2.13 -66.60 -0.14 1.14 16 18 H 0.06 0.96 7.78 -51.93 -0.40 0.55 16 19 C -0.13 -1.51 4.27 -25.21 -0.11 -1.61 16 20 C -0.07 -0.79 7.38 38.24 0.28 -0.51 16 21 S -0.32 -4.93 23.25 -107.50 -2.50 -7.43 16 22 C -0.06 -1.00 5.28 37.82 0.20 -0.80 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.47 4.27 -51.93 -0.22 0.25 16 25 H 0.02 0.53 7.05 -51.93 -0.37 0.17 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.68 6.64 -51.93 -0.34 1.33 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.84 5.80 -51.93 -0.30 0.53 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.82 7.40 -51.93 -0.38 0.43 16 35 H 0.09 1.03 7.41 -51.93 -0.38 0.65 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.83 8.04 -51.93 -0.42 1.41 16 39 H 0.11 2.20 4.78 -51.93 -0.25 1.95 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -28.96 295.86 -10.16 -39.12 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.46 Total: 0.66 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.83 Total: -17.67 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.18 Total: -36.03 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.65 Total: 16.89 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.50 Total: -7.43 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.96 -10.16 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259586153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.159 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds