Wall clock time and date at job start Mon Mar 30 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99805 * 2 1 4 4 H 1.48506 * 109.46898 * 270.00089 * 3 2 1 5 5 H 1.48496 * 109.47206 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47156 * 150.00266 * 3 2 1 7 7 C 1.37874 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00318 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47345 * 185.19991 * 9 7 2 11 11 H 1.09001 * 109.45463 * 298.08687 * 10 9 7 12 12 C 1.53040 * 109.45957 * 58.06070 * 10 9 7 13 13 C 1.53118 * 109.27496 * 179.19797 * 12 10 9 14 14 C 1.53122 * 109.16210 * 302.34413 * 13 12 10 15 15 C 1.53036 * 109.27767 * 57.65464 * 14 13 12 16 16 N 1.46842 * 109.52340 * 300.82315 * 15 14 13 17 17 C 1.46907 * 111.00115 * 185.83943 * 16 15 14 18 18 H 1.08994 * 109.60514 * 272.63633 * 17 16 15 19 19 C 1.53854 * 109.60598 * 32.97345 * 17 16 15 20 20 C 1.55040 * 106.94445 * 167.33471 * 19 17 16 21 21 S 1.83458 * 102.08862 * 317.64113 * 20 19 17 22 22 C 1.54273 * 109.61089 * 152.29756 * 17 16 15 23 23 H 0.97002 * 120.00164 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47154 * 65.19750 * 9 7 2 25 25 H 1.09002 * 109.46975 * 305.20260 * 9 7 2 26 26 H 1.08997 * 109.50667 * 59.25775 * 12 10 9 27 27 H 1.08995 * 109.53461 * 299.15600 * 12 10 9 28 28 H 1.09002 * 109.52195 * 182.43991 * 13 12 10 29 29 H 1.08995 * 109.57910 * 62.28152 * 13 12 10 30 30 H 1.08998 * 109.50183 * 297.71742 * 14 13 12 31 31 H 1.08998 * 109.50875 * 177.59832 * 14 13 12 32 32 H 1.09000 * 109.46035 * 180.80540 * 15 14 13 33 33 H 1.09000 * 109.46111 * 60.84080 * 15 14 13 34 34 H 1.08997 * 109.97775 * 286.53376 * 19 17 16 35 35 H 1.09000 * 109.97785 * 47.82054 * 19 17 16 36 36 H 1.09001 * 110.81697 * 199.54533 * 20 19 17 37 37 H 1.09002 * 111.18493 * 75.90505 * 20 19 17 38 38 H 1.09004 * 110.40346 * 330.91935 * 22 17 16 39 39 H 1.08998 * 110.40213 * 93.33633 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6306 -0.1300 11 1 3.6868 -3.2137 0.7279 12 6 3.4714 -3.2526 -1.4155 13 6 4.0004 -4.6830 -1.5515 14 6 5.5313 -4.6552 -1.5482 15 6 6.0218 -3.9924 -0.2589 16 7 5.4893 -2.6265 -0.1760 17 6 6.0502 -1.9119 0.9786 18 1 5.4421 -2.1091 1.8613 19 6 7.4923 -2.3863 1.2285 20 6 8.1301 -1.3867 2.2274 21 16 7.5387 0.2273 1.5862 22 6 6.0687 -0.3964 0.6905 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.7622 0.9324 25 1 3.8745 -0.6021 -0.8403 26 1 3.7944 -2.6621 -2.2728 27 1 2.3823 -3.2697 -1.3750 28 1 3.6460 -5.1150 -2.4874 29 1 3.6453 -5.2849 -0.7150 30 1 5.8868 -4.0867 -2.4076 31 1 5.9141 -5.6743 -1.6018 32 1 7.1113 -3.9581 -0.2600 33 1 5.6776 -4.5692 0.5996 34 1 7.4855 -3.3869 1.6606 35 1 8.0512 -2.3882 0.2927 36 1 9.2180 -1.4436 2.1910 37 1 7.7680 -1.5577 3.2412 38 1 6.1701 -0.2142 -0.3794 39 1 5.1629 0.0741 1.0728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259586153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:32 Heat of formation + Delta-G solvation = -21.616933 kcal Electronic energy + Delta-G solvation = -18124.184278 eV Core-core repulsion = 15577.522229 eV Total energy + Delta-G solvation = -2546.662049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76923 -36.80033 -35.44357 -33.54054 -32.54370 -30.08171 -29.37712 -26.04544 -24.63995 -24.38756 -21.87447 -21.16113 -20.51064 -19.06943 -17.65592 -17.32242 -16.40660 -16.16609 -15.65152 -15.44881 -14.99415 -14.82192 -14.58337 -14.40013 -14.09965 -13.77596 -13.63366 -13.10858 -12.84788 -12.65786 -12.56154 -12.37978 -12.26698 -12.03827 -11.90157 -11.75691 -11.53799 -11.44803 -11.18380 -10.95749 -10.79155 -10.57606 -9.24791 -8.72419 -8.30342 -6.31566 0.85480 1.30985 1.33237 1.41109 1.42771 2.32079 2.90148 3.05360 3.63781 3.71423 3.92545 3.96969 4.06545 4.09935 4.16055 4.27935 4.37693 4.51449 4.59033 4.61643 4.69071 4.71564 4.75150 4.83516 4.88544 5.00196 5.05819 5.12467 5.16179 5.22176 5.33638 5.38604 5.49337 5.55970 5.67197 6.12017 6.28195 6.33613 6.75163 7.31624 8.85945 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.009885 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.797558 B = 2831.830207 C = 4394.759275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.012 3.988 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.039 0.961 9 C -0.002 4.002 10 C 0.109 3.891 11 H 0.017 0.983 12 C -0.098 4.098 13 C -0.119 4.119 14 C -0.109 4.109 15 C 0.048 3.952 16 N -0.531 5.531 17 C 0.082 3.918 18 H 0.042 0.958 19 C -0.117 4.117 20 C -0.053 4.053 21 S -0.352 6.352 22 C -0.057 4.057 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.017 0.983 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.031 0.969 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.325 -8.531 1.100 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.185 4.185 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.555 4.555 8 H 0.057 0.943 9 C -0.039 4.039 10 C 0.001 3.999 11 H 0.035 0.965 12 C -0.136 4.136 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.079 4.079 16 N -0.256 5.256 17 C -0.029 4.029 18 H 0.060 0.940 19 C -0.155 4.155 20 C -0.201 4.201 21 S -0.128 6.128 22 C -0.205 4.205 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.764 -7.081 0.806 20.072 hybrid contribution -1.549 -0.275 0.574 1.675 sum 17.215 -7.356 1.380 18.772 Atomic orbital electron populations 1.70041 1.08019 1.27862 1.53035 1.25812 0.95407 1.02760 0.94545 0.85892 0.79641 0.79372 0.79032 1.19518 1.21263 1.17232 1.21376 0.91624 0.93031 1.49482 0.94290 1.19791 0.93853 0.94038 0.96247 1.21370 0.85763 0.96363 0.96450 0.96471 1.21439 0.99235 0.96265 0.96687 1.21619 0.96892 0.95368 1.01766 1.21580 0.94408 1.01078 0.97615 1.22389 1.00977 0.86967 0.97542 1.62053 1.06378 1.17074 1.40133 1.22400 0.96766 0.91463 0.92231 0.93956 1.22732 0.92569 1.00007 1.00211 1.24280 1.04799 0.89546 1.01452 1.87628 1.35655 1.20917 1.68559 1.24453 0.95723 0.97784 1.02555 0.92642 0.95986 0.96447 0.92685 0.93613 0.91088 0.92756 0.91476 0.89096 0.87819 0.95042 0.87327 0.88526 0.85342 0.88270 0.88976 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.94 45.56 27.37 68.60 1.88 47.44 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.25 -11.38 5.79 99.48 0.58 -10.80 16 7 C -0.52 -29.45 8.83 25.60 0.23 -29.22 16 8 H 0.04 2.43 7.03 -2.91 -0.02 2.41 16 9 C 0.00 -0.08 2.22 29.85 0.07 -0.01 16 10 C 0.11 4.20 1.80 44.94 0.08 4.29 16 11 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 12 C -0.10 -3.66 5.07 30.65 0.16 -3.50 16 13 C -0.12 -3.26 6.00 30.67 0.18 -3.08 16 14 C -0.11 -2.38 6.09 30.65 0.19 -2.20 16 15 C 0.05 1.10 4.55 86.33 0.39 1.49 16 16 N -0.53 -16.21 4.38 -841.84 -3.69 -19.90 16 17 C 0.08 2.34 2.13 45.63 0.10 2.44 16 18 H 0.04 1.35 7.78 -2.39 -0.02 1.34 16 19 C -0.12 -2.24 4.27 31.58 0.13 -2.11 16 20 C -0.05 -1.00 7.38 72.68 0.54 -0.46 16 21 S -0.35 -10.26 23.25 -56.49 -1.31 -11.57 16 22 C -0.06 -1.90 5.28 72.41 0.38 -1.52 16 23 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 24 H 0.02 1.04 4.27 -2.39 -0.01 1.03 16 25 H 0.02 0.82 7.05 -2.39 -0.02 0.81 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.99 6.64 -2.39 -0.02 1.98 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 1.79 5.80 -2.39 -0.01 1.78 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 1.57 7.40 -2.39 -0.02 1.56 16 35 H 0.10 1.76 7.41 -2.39 -0.02 1.75 16 36 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 3.23 8.04 -2.38 -0.02 3.21 16 39 H 0.08 3.16 4.78 -2.39 -0.01 3.15 16 Total: -1.00 -66.21 295.86 0.96 -65.25 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.88 Total: 11.02 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 2.91 Total: -32.73 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.39 Total: -79.40 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Atomic # 16 Polarization: -10.26 SS G_CDS: -1.31 Total: -11.57 kcal Total: -66.21 0.96 -65.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259586153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.632 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds