Wall clock time and date at job start Mon Mar 30 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48505 * 109.46956 * 269.99823 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99639 * 3 2 1 6 6 H 1.48499 * 109.47377 * 149.99389 * 3 2 1 7 7 C 1.37875 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 354.86376 * 7 2 1 9 9 C 1.50693 * 120.00276 * 174.86111 * 7 2 1 10 10 C 1.53002 * 109.47606 * 184.71279 * 9 7 2 11 11 H 1.08995 * 109.45120 * 56.27796 * 10 9 7 12 12 C 1.53034 * 109.45840 * 296.30919 * 10 9 7 13 13 C 1.53119 * 109.27589 * 180.80575 * 12 10 9 14 14 C 1.53115 * 109.16403 * 57.65348 * 13 12 10 15 15 C 1.53037 * 109.27719 * 302.34794 * 14 13 12 16 16 N 1.46846 * 109.52453 * 59.17808 * 15 14 13 17 17 C 1.46898 * 111.00184 * 174.16191 * 16 15 14 18 18 H 1.08999 * 109.60752 * 181.89661 * 17 16 15 19 19 C 1.53859 * 109.46356 * 302.14788 * 17 16 15 20 20 C 1.55137 * 106.90023 * 167.08968 * 19 17 16 21 21 S 1.83463 * 102.20291 * 317.87849 * 20 19 17 22 22 C 1.54281 * 109.60784 * 61.55503 * 17 16 15 23 23 H 0.97001 * 119.99879 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47405 * 64.71008 * 9 7 2 25 25 H 1.09001 * 109.46976 * 304.71593 * 9 7 2 26 26 H 1.08997 * 109.50777 * 60.86409 * 12 10 9 27 27 H 1.09008 * 109.50571 * 300.74252 * 12 10 9 28 28 H 1.09004 * 109.52331 * 297.74186 * 13 12 10 29 29 H 1.09000 * 109.57331 * 177.59258 * 13 12 10 30 30 H 1.09002 * 109.50470 * 182.40396 * 14 13 12 31 31 H 1.08999 * 109.50471 * 62.28887 * 14 13 12 32 32 H 1.09002 * 109.45930 * 299.16292 * 15 14 13 33 33 H 1.09002 * 109.45569 * 179.19199 * 15 14 13 34 34 H 1.09000 * 109.97101 * 286.44371 * 19 17 16 35 35 H 1.09001 * 109.97724 * 47.72687 * 19 17 16 36 36 H 1.08998 * 110.85954 * 199.70525 * 20 19 17 37 37 H 1.08998 * 110.85896 * 76.05552 * 20 19 17 38 38 H 1.08994 * 110.40378 * 331.09825 * 22 17 16 39 39 H 1.09000 * 110.39942 * 93.51717 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1274 0.0847 9 6 3.5069 -1.1968 -0.1164 10 6 4.0087 -2.6392 -0.2089 11 1 3.5244 -3.1389 -1.0478 12 6 3.6740 -3.3797 1.0879 13 6 4.1956 -4.8165 0.9986 14 6 5.7042 -4.7882 0.7380 15 6 5.9800 -4.0069 -0.5486 16 7 5.4630 -2.6392 -0.4127 17 6 5.8317 -1.8190 -1.5742 18 1 5.4663 -0.8017 -1.4345 19 6 7.3629 -1.8017 -1.7242 20 6 7.6721 -1.2138 -3.1262 21 16 6.4129 -2.0354 -4.1775 22 6 5.2107 -2.4215 -2.8516 23 1 -0.4850 0.8401 -0.0004 24 1 3.9405 -0.7169 0.7610 25 1 3.8026 -0.6510 -1.0123 26 1 2.5935 -3.3930 1.2308 27 1 4.1467 -2.8725 1.9290 28 1 3.6945 -5.3359 0.1818 29 1 3.9976 -5.3357 1.9363 30 1 6.0742 -5.8079 0.6310 31 1 6.2089 -4.3032 1.5736 32 1 5.4865 -4.5002 -1.3860 33 1 7.0544 -3.9727 -0.7294 34 1 7.8056 -1.1735 -0.9512 35 1 7.7558 -2.8157 -1.6508 36 1 8.6791 -1.4816 -3.4459 37 1 7.5367 -0.1322 -3.1320 38 1 5.0953 -3.5001 -2.7457 39 1 4.2488 -1.9545 -3.0631 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259586157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:36 Heat of formation + Delta-G solvation = -7.170139 kcal Electronic energy + Delta-G solvation = -18090.828826 eV Core-core repulsion = 15544.793237 eV Total energy + Delta-G solvation = -2546.035589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.57614 -35.58935 -33.49201 -31.90878 -31.17576 -28.57861 -27.60341 -24.93737 -23.65547 -23.06050 -20.35886 -20.15915 -18.56491 -17.01227 -16.62734 -16.01489 -15.01269 -14.57048 -14.36328 -14.07216 -13.67524 -13.59528 -13.25878 -12.75867 -12.72366 -12.39481 -12.06427 -11.87389 -11.69732 -11.62910 -11.20907 -10.88666 -10.81250 -10.72989 -10.40248 -10.19013 -9.89738 -9.84913 -9.78917 -9.45027 -9.09385 -8.55190 -7.90650 -7.61622 -6.07717 -4.05188 1.90206 2.46110 3.28261 3.36729 3.40559 4.10602 4.42557 4.65892 4.88802 4.95430 5.06020 5.16685 5.20320 5.22070 5.25549 5.38988 5.51878 5.66307 5.66738 5.75986 5.82361 5.90818 5.99507 6.02606 6.12478 6.22660 6.26858 6.32373 6.36028 6.65432 6.77860 6.98039 7.05255 7.24074 7.48410 7.58738 7.81709 8.49563 8.96746 9.54970 11.05343 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.008722 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.254555 B = 3209.610309 C = 4340.063060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.074 0.926 9 C -0.006 4.006 10 C 0.099 3.901 11 H 0.037 0.963 12 C -0.101 4.101 13 C -0.124 4.124 14 C -0.113 4.113 15 C 0.046 3.954 16 N -0.523 5.523 17 C 0.077 3.923 18 H 0.104 0.896 19 C -0.124 4.124 20 C -0.070 4.070 21 S -0.307 6.307 22 C -0.099 4.099 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.013 0.987 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.917 -6.175 -1.970 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.092 0.908 9 C -0.044 4.044 10 C -0.008 4.008 11 H 0.055 0.945 12 C -0.139 4.139 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.081 4.081 16 N -0.246 5.246 17 C -0.034 4.034 18 H 0.122 0.878 19 C -0.163 4.163 20 C -0.218 4.218 21 S -0.083 6.083 22 C -0.249 4.249 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.031 0.969 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.932 -6.071 -2.700 16.344 hybrid contribution -0.128 0.812 0.377 0.904 sum 14.804 -5.259 -2.323 15.881 Atomic orbital electron populations 1.69911 1.06279 1.26897 1.50894 1.24972 0.94654 0.99011 0.94555 0.86850 0.80596 0.83908 0.78541 1.20329 1.21367 1.18890 1.21052 0.89441 0.94558 1.50554 0.90804 1.19683 0.97033 0.91040 0.96618 1.21633 0.83436 0.99093 0.96655 0.94470 1.21544 1.01820 0.93034 0.97516 1.21658 0.95274 0.98313 1.00934 1.21554 0.97027 0.98664 0.97818 1.22202 0.99626 0.89299 0.97006 1.62228 1.15328 1.10637 1.36441 1.22678 0.93631 0.99840 0.87215 0.87770 1.22684 0.95649 1.02520 0.95441 1.24199 0.99445 1.02413 0.95777 1.87436 1.23744 1.77274 1.19831 1.24821 1.00402 1.04884 0.94812 0.92721 0.95887 0.96909 0.90221 0.91856 0.92742 0.92409 0.92343 0.91392 0.94974 0.90990 0.89267 0.89995 0.88178 0.89137 0.88877 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.43 27.43 -169.99 -4.66 16.76 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.25 6.64 56.52 0.38 -5.88 16 7 C -0.52 -14.13 9.04 -34.44 -0.31 -14.44 16 8 H 0.07 2.16 7.04 -52.49 -0.37 1.79 16 9 C -0.01 -0.14 3.25 -27.89 -0.09 -0.23 16 10 C 0.10 1.88 1.53 -67.72 -0.10 1.78 16 11 H 0.04 0.75 7.35 -51.93 -0.38 0.37 16 12 C -0.10 -1.82 5.15 -26.65 -0.14 -1.96 16 13 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 14 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 15 C 0.05 0.63 4.81 -3.83 -0.02 0.61 16 16 N -0.52 -8.35 4.50 -217.44 -0.98 -9.33 16 17 C 0.08 1.16 2.21 -66.60 -0.15 1.01 16 18 H 0.10 1.80 6.00 -51.93 -0.31 1.48 16 19 C -0.12 -1.49 5.76 -25.15 -0.14 -1.63 16 20 C -0.07 -0.80 7.38 38.29 0.28 -0.51 16 21 S -0.31 -4.45 23.26 -107.50 -2.50 -6.95 16 22 C -0.10 -1.54 5.57 37.83 0.21 -1.33 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.55 7.34 -51.93 -0.38 0.16 16 25 H 0.01 0.29 5.40 -51.93 -0.28 0.01 16 26 H 0.08 1.59 6.80 -51.93 -0.35 1.24 16 27 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.45 6.20 -51.93 -0.32 0.13 16 33 H 0.07 0.86 5.72 -51.93 -0.30 0.57 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.93 5.71 -51.93 -0.30 0.63 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.42 5.76 -51.93 -0.30 1.12 16 39 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -28.97 297.18 -10.03 -39.00 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.26 Total: 0.95 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.88 Total: -18.37 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.21 Total: -35.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.66 Total: 16.76 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.50 Total: -6.95 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.97 -10.03 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259586157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.829 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds