Wall clock time and date at job start Mon Mar 30 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48505 * 109.46956 * 269.99823 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99639 * 3 2 1 6 6 H 1.48499 * 109.47377 * 149.99389 * 3 2 1 7 7 C 1.37875 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 354.86376 * 7 2 1 9 9 C 1.50693 * 120.00276 * 174.86111 * 7 2 1 10 10 C 1.53002 * 109.47606 * 184.71279 * 9 7 2 11 11 H 1.08995 * 109.45120 * 56.27796 * 10 9 7 12 12 C 1.53034 * 109.45840 * 296.30919 * 10 9 7 13 13 C 1.53119 * 109.27589 * 180.80575 * 12 10 9 14 14 C 1.53115 * 109.16403 * 57.65348 * 13 12 10 15 15 C 1.53037 * 109.27719 * 302.34794 * 14 13 12 16 16 N 1.46846 * 109.52453 * 59.17808 * 15 14 13 17 17 C 1.46898 * 111.00184 * 174.16191 * 16 15 14 18 18 H 1.08999 * 109.60752 * 181.89661 * 17 16 15 19 19 C 1.53859 * 109.46356 * 302.14788 * 17 16 15 20 20 C 1.55137 * 106.90023 * 167.08968 * 19 17 16 21 21 S 1.83463 * 102.20291 * 317.87849 * 20 19 17 22 22 C 1.54281 * 109.60784 * 61.55503 * 17 16 15 23 23 H 0.97001 * 119.99879 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47405 * 64.71008 * 9 7 2 25 25 H 1.09001 * 109.46976 * 304.71593 * 9 7 2 26 26 H 1.08997 * 109.50777 * 60.86409 * 12 10 9 27 27 H 1.09008 * 109.50571 * 300.74252 * 12 10 9 28 28 H 1.09004 * 109.52331 * 297.74186 * 13 12 10 29 29 H 1.09000 * 109.57331 * 177.59258 * 13 12 10 30 30 H 1.09002 * 109.50470 * 182.40396 * 14 13 12 31 31 H 1.08999 * 109.50471 * 62.28887 * 14 13 12 32 32 H 1.09002 * 109.45930 * 299.16292 * 15 14 13 33 33 H 1.09002 * 109.45569 * 179.19199 * 15 14 13 34 34 H 1.09000 * 109.97101 * 286.44371 * 19 17 16 35 35 H 1.09001 * 109.97724 * 47.72687 * 19 17 16 36 36 H 1.08998 * 110.85954 * 199.70525 * 20 19 17 37 37 H 1.08998 * 110.85896 * 76.05552 * 20 19 17 38 38 H 1.08994 * 110.40378 * 331.09825 * 22 17 16 39 39 H 1.09000 * 110.39942 * 93.51717 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1274 0.0847 9 6 3.5069 -1.1968 -0.1164 10 6 4.0087 -2.6392 -0.2089 11 1 3.5244 -3.1389 -1.0478 12 6 3.6740 -3.3797 1.0879 13 6 4.1956 -4.8165 0.9986 14 6 5.7042 -4.7882 0.7380 15 6 5.9800 -4.0069 -0.5486 16 7 5.4630 -2.6392 -0.4127 17 6 5.8317 -1.8190 -1.5742 18 1 5.4663 -0.8017 -1.4345 19 6 7.3629 -1.8017 -1.7242 20 6 7.6721 -1.2138 -3.1262 21 16 6.4129 -2.0354 -4.1775 22 6 5.2107 -2.4215 -2.8516 23 1 -0.4850 0.8401 -0.0004 24 1 3.9405 -0.7169 0.7610 25 1 3.8026 -0.6510 -1.0123 26 1 2.5935 -3.3930 1.2308 27 1 4.1467 -2.8725 1.9290 28 1 3.6945 -5.3359 0.1818 29 1 3.9976 -5.3357 1.9363 30 1 6.0742 -5.8079 0.6310 31 1 6.2089 -4.3032 1.5736 32 1 5.4865 -4.5002 -1.3860 33 1 7.0544 -3.9727 -0.7294 34 1 7.8056 -1.1735 -0.9512 35 1 7.7558 -2.8157 -1.6508 36 1 8.6791 -1.4816 -3.4459 37 1 7.5367 -0.1322 -3.1320 38 1 5.0953 -3.5001 -2.7457 39 1 4.2488 -1.9545 -3.0631 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259586157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:36 Heat of formation + Delta-G solvation = -24.646238 kcal Electronic energy + Delta-G solvation = -18091.586646 eV Core-core repulsion = 15544.793237 eV Total energy + Delta-G solvation = -2546.793409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86955 -36.77943 -35.35865 -33.46421 -32.57367 -29.80115 -29.26552 -26.15530 -25.14617 -24.43884 -21.85973 -21.36134 -19.91958 -19.04813 -17.76323 -17.26329 -16.54842 -16.02870 -15.71548 -15.42511 -15.04424 -14.89124 -14.60051 -14.54066 -13.95562 -13.70714 -13.48728 -13.24123 -13.01010 -12.95550 -12.55222 -12.37036 -12.28406 -12.09564 -11.87992 -11.61932 -11.55019 -11.44616 -11.09253 -10.90135 -10.86239 -10.71658 -9.22354 -8.75914 -8.30003 -6.31887 0.80628 1.31856 1.34466 1.39179 1.46021 2.33891 2.86444 3.05458 3.55760 3.81058 3.83778 3.96869 4.05311 4.07608 4.10304 4.23029 4.35906 4.43827 4.54630 4.60021 4.69262 4.72200 4.80222 4.80312 4.95514 5.04258 5.10220 5.12055 5.17216 5.17941 5.33433 5.37487 5.47202 5.55483 5.65807 6.10435 6.25212 6.32789 6.75158 7.31570 8.86420 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.008722 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.254555 B = 3209.610309 C = 4340.063060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.519 4.519 8 H 0.037 0.963 9 C 0.002 3.998 10 C 0.109 3.891 11 H 0.017 0.983 12 C -0.100 4.100 13 C -0.119 4.119 14 C -0.107 4.107 15 C 0.044 3.956 16 N -0.520 5.520 17 C 0.073 3.927 18 H 0.081 0.919 19 C -0.113 4.113 20 C -0.056 4.056 21 S -0.335 6.335 22 C -0.094 4.094 23 H 0.265 0.735 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.604 -6.271 -1.796 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.558 4.558 8 H 0.055 0.945 9 C -0.035 4.035 10 C 0.001 3.999 11 H 0.035 0.965 12 C -0.138 4.138 13 C -0.157 4.157 14 C -0.145 4.145 15 C -0.083 4.083 16 N -0.244 5.244 17 C -0.037 4.037 18 H 0.099 0.901 19 C -0.152 4.152 20 C -0.204 4.204 21 S -0.111 6.111 22 C -0.244 4.244 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.645 -6.182 -2.529 19.805 hybrid contribution -1.318 0.785 0.299 1.563 sum 17.327 -5.397 -2.230 18.284 Atomic orbital electron populations 1.70061 1.08160 1.27965 1.52815 1.25888 0.95468 1.03086 0.94416 0.85787 0.79764 0.79003 0.79020 1.19524 1.21000 1.17073 1.21356 0.91909 0.93171 1.49362 0.94475 1.19541 0.93898 0.93879 0.96199 1.21313 0.85744 0.96340 0.96522 0.96509 1.21460 0.99816 0.95760 0.96761 1.21614 0.96841 0.95455 1.01755 1.21556 0.95181 1.00327 0.97391 1.22361 1.00921 0.87589 0.97417 1.62201 1.12541 1.12571 1.37069 1.22736 0.96186 0.98272 0.86530 0.90124 1.22629 0.92549 1.03819 0.96183 1.24354 0.99410 1.02400 0.94234 1.87540 1.24819 1.77927 1.20794 1.24642 0.99481 1.04536 0.95719 0.92615 0.96254 0.96750 0.93657 0.92086 0.93144 0.90763 0.89355 0.90938 0.95445 0.88282 0.87661 0.88607 0.85227 0.88496 0.88860 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.01 0.49 5.47 84.65 0.46 0.95 16 3 Si 0.94 44.69 27.43 68.60 1.88 46.57 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.25 -10.97 6.64 99.48 0.66 -10.31 16 7 C -0.52 -29.64 9.04 25.60 0.23 -29.41 16 8 H 0.04 2.33 7.04 -2.91 -0.02 2.31 16 9 C 0.00 0.11 3.25 29.85 0.10 0.21 16 10 C 0.11 4.20 1.53 44.94 0.07 4.27 16 11 H 0.02 0.72 7.35 -2.39 -0.02 0.70 16 12 C -0.10 -3.65 5.15 30.65 0.16 -3.49 16 13 C -0.12 -3.27 6.00 30.67 0.18 -3.09 16 14 C -0.11 -2.37 6.09 30.65 0.19 -2.18 16 15 C 0.04 1.06 4.81 86.33 0.42 1.48 16 16 N -0.52 -15.81 4.50 -841.83 -3.79 -19.60 16 17 C 0.07 2.10 2.21 45.64 0.10 2.20 16 18 H 0.08 2.70 6.00 -2.39 -0.01 2.69 16 19 C -0.11 -2.28 5.76 31.62 0.18 -2.10 16 20 C -0.06 -1.07 7.38 72.71 0.54 -0.53 16 21 S -0.33 -9.17 23.26 -56.49 -1.31 -10.48 16 22 C -0.09 -2.88 5.57 72.42 0.40 -2.48 16 23 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.02 0.91 7.34 -2.39 -0.02 0.89 16 25 H 0.01 0.67 5.40 -2.39 -0.01 0.65 16 26 H 0.04 1.92 6.80 -2.39 -0.02 1.91 16 27 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 0.71 6.20 -2.39 -0.01 0.69 16 33 H 0.10 1.91 5.72 -2.39 -0.01 1.90 16 34 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 1.70 5.71 -2.39 -0.01 1.68 16 36 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 2.82 5.76 -2.39 -0.01 2.81 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -65.38 297.18 1.08 -64.30 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.97 Total: 12.84 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 3.03 Total: -34.17 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -3.49 Total: -79.06 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.31 Total: -10.48 kcal Total: -65.38 1.08 -64.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259586157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.658 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds