Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47376 * 2 1 4 4 C 1.53161 * 109.47653 * 239.99275 * 2 1 3 5 5 C 1.52439 * 109.30820 * 181.85645 * 4 2 1 6 6 C 1.53715 * 110.49337 * 293.37824 * 5 4 2 7 7 C 1.53991 * 108.85180 * 269.04044 * 6 5 4 8 8 H 1.08996 * 109.92340 * 72.55810 * 7 6 5 9 9 C 1.50700 * 109.92477 * 193.89072 * 7 6 5 10 10 H 1.08001 * 120.00186 * 34.03352 * 9 7 6 11 11 C 1.37875 * 119.99437 * 214.03345 * 9 7 6 12 12 N 1.31517 * 119.99356 * 185.78766 * 11 9 7 13 13 Si 1.86795 * 120.00568 * 5.78401 * 11 9 7 14 14 H 1.48493 * 109.47029 * 84.78885 * 13 11 9 15 15 H 1.48503 * 109.47390 * 204.78879 * 13 11 9 16 16 H 1.48506 * 109.47078 * 324.78689 * 13 11 9 17 17 C 1.55180 * 106.99392 * 313.22582 * 7 6 5 18 18 S 1.82687 * 109.95133 * 177.80990 * 5 4 2 19 19 C 1.52443 * 110.69881 * 56.11911 * 5 4 2 20 20 C 1.53162 * 109.31671 * 303.89114 * 19 5 4 21 21 N 1.46848 * 109.45163 * 58.12184 * 20 19 5 22 22 C 1.46906 * 110.99911 * 173.60021 * 21 20 19 23 23 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47303 * 300.00240 * 1 2 3 25 25 H 1.08993 * 109.47314 * 60.00928 * 1 2 3 26 26 H 1.09000 * 109.49900 * 61.90378 * 4 2 1 27 27 H 1.09006 * 109.49694 * 301.80817 * 4 2 1 28 28 H 1.08999 * 109.61741 * 28.94142 * 6 5 4 29 29 H 1.09003 * 109.62029 * 149.30213 * 6 5 4 30 30 H 0.97006 * 119.99955 * 179.97438 * 12 11 9 31 31 H 1.09003 * 110.85334 * 160.01641 * 17 7 6 32 32 H 1.09004 * 110.85198 * 283.44776 * 17 7 6 33 33 H 1.09004 * 109.49647 * 63.84381 * 19 5 4 34 34 H 1.08998 * 109.49782 * 183.93495 * 19 5 4 35 35 H 1.09002 * 109.46830 * 298.12653 * 20 19 5 36 36 H 1.08996 * 109.47783 * 178.11912 * 20 19 5 37 37 H 1.08996 * 109.46936 * 184.35970 * 22 21 20 38 38 H 1.09006 * 109.46213 * 304.35598 * 22 21 20 39 39 H 1.08993 * 109.47356 * 64.35649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7221 -1.2504 5 6 3.5643 -0.7604 -1.2235 6 6 4.1408 0.6576 -1.3644 7 6 4.3719 0.9546 -2.8576 8 1 3.4158 1.1085 -3.3580 9 6 5.2387 2.1779 -3.0098 10 1 6.0146 2.3833 -2.2872 11 6 5.0410 3.0350 -4.0716 12 7 5.8677 4.0386 -4.2691 13 14 3.5992 2.7708 -5.2295 14 1 2.3858 3.4130 -4.6636 15 1 3.9083 3.3743 -6.5506 16 1 3.3575 1.3149 -5.3948 17 6 5.0911 -0.2815 -3.4600 18 16 4.1907 -1.6754 -2.6753 19 6 4.0643 -1.4148 0.0594 20 6 3.4865 -0.6700 1.2666 21 7 2.0197 -0.6925 1.1989 22 6 1.4277 -0.1208 2.4157 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5136 -0.8900 26 1 1.7058 -0.1895 -2.1405 27 1 1.6514 -1.7402 -1.2671 28 1 3.4378 1.3811 -0.9517 29 1 5.0886 0.7222 -0.8298 30 1 5.7289 4.6415 -5.0163 31 1 4.9771 -0.3069 -4.5437 32 1 6.1451 -0.2908 -3.1821 33 1 3.7424 -2.4559 0.0861 34 1 5.1529 -1.3692 0.0907 35 1 3.8349 0.3628 1.2571 36 1 3.8154 -1.1561 2.1850 37 1 0.3431 -0.2201 2.3733 38 1 1.8074 -0.6521 3.2885 39 1 1.6935 0.9338 2.4882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259614930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -13.455500 kcal Electronic energy + Delta-G solvation = -18060.339709 eV Core-core repulsion = 15514.031566 eV Total energy + Delta-G solvation = -2546.308142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55436 -35.82594 -33.25684 -32.35731 -31.47569 -27.58116 -26.53219 -25.60740 -24.97136 -22.78363 -21.09235 -20.12079 -18.14075 -17.08171 -16.21237 -15.56728 -15.06547 -14.68549 -14.37622 -14.24779 -13.86958 -13.37690 -12.85627 -12.66654 -12.54909 -12.18665 -11.89957 -11.78577 -11.76808 -11.67849 -11.32389 -11.06987 -11.00045 -10.80355 -10.51234 -10.35200 -10.06124 -9.79876 -9.71295 -9.35923 -8.96937 -8.66210 -8.19325 -7.10212 -6.23458 -4.23979 2.51540 3.12341 3.21829 3.29178 3.31772 3.95903 4.29221 4.86402 4.95617 5.03402 5.06982 5.19892 5.33494 5.44399 5.47613 5.59890 5.62263 5.69121 5.76830 5.81499 5.86725 5.94330 5.97454 6.09227 6.13174 6.18924 6.21079 6.32103 6.39848 6.48951 6.56133 6.57657 6.98393 7.12594 7.15685 7.18933 7.53816 8.34371 8.80736 9.38332 10.88786 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.007443 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.041571 B = 3761.233105 C = 4075.433845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.049 0.951 4 C -0.084 4.084 5 C -0.004 4.004 6 C -0.108 4.108 7 C 0.016 3.984 8 H 0.044 0.956 9 C -0.510 4.510 10 H 0.076 0.924 11 C 0.076 3.924 12 N -0.891 5.891 13 Si 0.873 3.127 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.047 4.047 18 S -0.355 6.355 19 C -0.088 4.088 20 C 0.058 3.942 21 N -0.538 5.538 22 C 0.022 3.978 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.266 0.734 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 -8.111 9.614 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.066 0.934 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.147 4.147 7 C -0.005 4.005 8 H 0.062 0.938 9 C -0.549 4.549 10 H 0.094 0.906 11 C -0.128 4.128 12 N -0.528 5.528 13 Si 0.700 3.300 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.195 4.195 18 S -0.123 6.123 19 C -0.128 4.128 20 C -0.071 4.071 21 N -0.264 5.264 22 C -0.126 4.126 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.651 -9.627 9.048 15.792 hybrid contribution -0.204 1.996 -0.386 2.043 sum -8.854 -7.631 8.662 14.549 Atomic orbital electron populations 1.21909 0.94464 1.02363 1.01678 1.21772 0.95075 0.96004 0.90131 0.93351 1.21613 0.92798 1.01334 0.96612 1.22859 0.97295 0.97612 0.93622 1.22462 1.00410 0.91871 0.99908 1.20145 0.96169 0.93435 0.90746 0.93753 1.20843 1.17877 1.04867 1.11333 0.90567 1.25084 0.95938 0.94806 0.96963 1.69901 1.36248 1.16330 1.30314 0.86904 0.83333 0.79238 0.80536 1.19937 1.21291 1.18640 1.24931 1.01152 0.92084 1.01374 1.87041 1.68949 1.25428 1.30838 1.21582 1.00126 0.99530 0.91560 1.22154 0.87036 0.99431 0.98513 1.61943 1.07121 1.55231 1.02068 1.22404 1.00472 0.97312 0.92450 0.91888 0.92584 0.92057 0.90832 0.90994 0.91269 0.91541 0.92366 0.89941 0.89828 0.91068 0.90792 0.94293 0.90828 0.91117 0.91741 0.95787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.75 37.16 0.32 -1.36 16 2 C 0.08 1.10 2.27 -67.65 -0.15 0.95 16 3 H 0.05 0.73 6.45 -51.93 -0.33 0.40 16 4 C -0.08 -1.31 4.20 -26.93 -0.11 -1.43 16 5 C 0.00 -0.07 0.73 -90.82 -0.07 -0.14 16 6 C -0.11 -2.09 3.86 -25.84 -0.10 -2.19 16 7 C 0.02 0.35 2.19 -90.10 -0.20 0.15 16 8 H 0.04 1.03 5.30 -51.93 -0.28 0.75 16 9 C -0.51 -13.57 8.87 -34.44 -0.31 -13.88 16 10 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 11 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 13 Si 0.87 20.80 27.03 -169.99 -4.59 16.20 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.26 -6.05 6.78 56.52 0.38 -5.67 16 17 C -0.05 -1.01 6.74 38.31 0.26 -0.75 16 18 S -0.35 -6.78 22.06 -107.50 -2.37 -9.15 16 19 C -0.09 -1.31 4.83 -26.93 -0.13 -1.44 16 20 C 0.06 0.77 5.30 -3.77 -0.02 0.75 16 21 N -0.54 -6.96 4.73 -234.76 -1.11 -8.07 16 22 C 0.02 0.23 9.03 60.07 0.54 0.77 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.32 6.11 -51.93 -0.32 1.00 16 29 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 35 H 0.04 0.55 7.53 -51.93 -0.39 0.15 16 36 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.07 0.68 6.21 -51.93 -0.32 0.35 16 38 H 0.06 0.60 8.09 -51.93 -0.42 0.19 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -28.04 302.27 -9.39 -37.43 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.58 Total: 1.04 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.06 Total: -16.57 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: -0.34 Total: -33.50 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.59 Total: 16.20 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -2.37 Total: -9.15 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.04 -9.39 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.974 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds