Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47376 * 2 1 4 4 C 1.53161 * 109.47653 * 239.99275 * 2 1 3 5 5 C 1.52439 * 109.30820 * 181.85645 * 4 2 1 6 6 C 1.53715 * 110.49337 * 293.37824 * 5 4 2 7 7 C 1.53991 * 108.85180 * 269.04044 * 6 5 4 8 8 H 1.08996 * 109.92340 * 72.55810 * 7 6 5 9 9 C 1.50700 * 109.92477 * 193.89072 * 7 6 5 10 10 H 1.08001 * 120.00186 * 34.03352 * 9 7 6 11 11 C 1.37875 * 119.99437 * 214.03345 * 9 7 6 12 12 N 1.31517 * 119.99356 * 185.78766 * 11 9 7 13 13 Si 1.86795 * 120.00568 * 5.78401 * 11 9 7 14 14 H 1.48493 * 109.47029 * 84.78885 * 13 11 9 15 15 H 1.48503 * 109.47390 * 204.78879 * 13 11 9 16 16 H 1.48506 * 109.47078 * 324.78689 * 13 11 9 17 17 C 1.55180 * 106.99392 * 313.22582 * 7 6 5 18 18 S 1.82687 * 109.95133 * 177.80990 * 5 4 2 19 19 C 1.52443 * 110.69881 * 56.11911 * 5 4 2 20 20 C 1.53162 * 109.31671 * 303.89114 * 19 5 4 21 21 N 1.46848 * 109.45163 * 58.12184 * 20 19 5 22 22 C 1.46906 * 110.99911 * 173.60021 * 21 20 19 23 23 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47303 * 300.00240 * 1 2 3 25 25 H 1.08993 * 109.47314 * 60.00928 * 1 2 3 26 26 H 1.09000 * 109.49900 * 61.90378 * 4 2 1 27 27 H 1.09006 * 109.49694 * 301.80817 * 4 2 1 28 28 H 1.08999 * 109.61741 * 28.94142 * 6 5 4 29 29 H 1.09003 * 109.62029 * 149.30213 * 6 5 4 30 30 H 0.97006 * 119.99955 * 179.97438 * 12 11 9 31 31 H 1.09003 * 110.85334 * 160.01641 * 17 7 6 32 32 H 1.09004 * 110.85198 * 283.44776 * 17 7 6 33 33 H 1.09004 * 109.49647 * 63.84381 * 19 5 4 34 34 H 1.08998 * 109.49782 * 183.93495 * 19 5 4 35 35 H 1.09002 * 109.46830 * 298.12653 * 20 19 5 36 36 H 1.08996 * 109.47783 * 178.11912 * 20 19 5 37 37 H 1.08996 * 109.46936 * 184.35970 * 22 21 20 38 38 H 1.09006 * 109.46213 * 304.35598 * 22 21 20 39 39 H 1.08993 * 109.47356 * 64.35649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7221 -1.2504 5 6 3.5643 -0.7604 -1.2235 6 6 4.1408 0.6576 -1.3644 7 6 4.3719 0.9546 -2.8576 8 1 3.4158 1.1085 -3.3580 9 6 5.2387 2.1779 -3.0098 10 1 6.0146 2.3833 -2.2872 11 6 5.0410 3.0350 -4.0716 12 7 5.8677 4.0386 -4.2691 13 14 3.5992 2.7708 -5.2295 14 1 2.3858 3.4130 -4.6636 15 1 3.9083 3.3743 -6.5506 16 1 3.3575 1.3149 -5.3948 17 6 5.0911 -0.2815 -3.4600 18 16 4.1907 -1.6754 -2.6753 19 6 4.0643 -1.4148 0.0594 20 6 3.4865 -0.6700 1.2666 21 7 2.0197 -0.6925 1.1989 22 6 1.4277 -0.1208 2.4157 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5136 -0.8900 26 1 1.7058 -0.1895 -2.1405 27 1 1.6514 -1.7402 -1.2671 28 1 3.4378 1.3811 -0.9517 29 1 5.0886 0.7222 -0.8298 30 1 5.7289 4.6415 -5.0163 31 1 4.9771 -0.3069 -4.5437 32 1 6.1451 -0.2908 -3.1821 33 1 3.7424 -2.4559 0.0861 34 1 5.1529 -1.3692 0.0907 35 1 3.8349 0.3628 1.2571 36 1 3.8154 -1.1561 2.1850 37 1 0.3431 -0.2201 2.3733 38 1 1.8074 -0.6521 3.2885 39 1 1.6935 0.9338 2.4882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259614930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -29.723378 kcal Electronic energy + Delta-G solvation = -18061.045137 eV Core-core repulsion = 15514.031566 eV Total energy + Delta-G solvation = -2547.013571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74173 -37.36072 -34.93298 -33.47692 -33.22350 -28.77990 -27.66169 -27.51223 -26.38602 -23.92335 -22.25146 -21.84192 -19.61280 -19.00479 -17.61540 -16.63657 -16.41856 -16.17347 -15.95978 -15.52275 -15.24768 -14.82489 -14.62383 -14.00685 -13.91229 -13.42713 -13.32288 -12.98414 -12.93138 -12.83073 -12.76293 -12.67701 -12.54440 -12.18309 -11.90717 -11.77623 -11.66043 -11.39327 -11.22382 -11.15210 -10.79052 -10.58196 -9.22191 -8.65382 -8.37228 -6.41902 0.99579 1.29703 1.33245 1.42865 1.52177 2.28114 2.96111 2.98462 3.63121 3.70968 3.91384 4.01554 4.15069 4.19230 4.32455 4.39725 4.47040 4.50568 4.56342 4.59672 4.71076 4.73025 4.81090 4.82006 4.90831 4.94672 4.99555 5.07161 5.09055 5.16464 5.20097 5.30660 5.37395 5.40643 5.52095 6.14469 6.18922 6.20891 6.63475 7.23578 8.78677 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.007443 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.041571 B = 3761.233105 C = 4075.433845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.032 0.968 4 C -0.082 4.082 5 C 0.003 3.997 6 C -0.099 4.099 7 C 0.015 3.985 8 H 0.043 0.957 9 C -0.511 4.511 10 H 0.038 0.962 11 C 0.022 3.978 12 N -0.939 5.939 13 Si 0.934 3.066 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.249 1.249 17 C -0.051 4.051 18 S -0.345 6.345 19 C -0.085 4.085 20 C 0.061 3.939 21 N -0.541 5.541 22 C 0.021 3.979 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -9.631 10.619 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 H 0.050 0.950 4 C -0.121 4.121 5 C -0.107 4.107 6 C -0.138 4.138 7 C -0.006 4.006 8 H 0.061 0.939 9 C -0.550 4.550 10 H 0.056 0.944 11 C -0.177 4.177 12 N -0.578 5.578 13 Si 0.758 3.242 14 H -0.187 1.187 15 H -0.211 1.211 16 H -0.173 1.173 17 C -0.199 4.199 18 S -0.113 6.113 19 C -0.124 4.124 20 C -0.068 4.068 21 N -0.267 5.267 22 C -0.127 4.127 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.867 -11.162 10.073 18.551 hybrid contribution 0.539 2.443 -0.600 2.572 sum -10.328 -8.720 9.473 16.506 Atomic orbital electron populations 1.21875 0.92474 1.02999 1.02558 1.21727 0.96649 0.94736 0.89740 0.94988 1.21594 0.91377 1.01762 0.97387 1.22987 0.98373 0.95585 0.93713 1.22302 1.00256 0.93752 0.97476 1.20098 0.95174 0.92285 0.93009 0.93898 1.21019 1.17283 1.06521 1.10212 0.94378 1.25877 0.98534 0.94521 0.98770 1.70034 1.38463 1.17796 1.31518 0.85926 0.80153 0.79842 0.78321 1.18748 1.21130 1.17315 1.24630 1.00911 0.93024 1.01365 1.86991 1.68485 1.24203 1.31603 1.21556 1.00089 0.99759 0.91006 1.22140 0.87437 0.98705 0.98551 1.61976 1.06779 1.55280 1.02639 1.22493 1.01228 0.97202 0.91757 0.91312 0.91043 0.91950 0.91904 0.90456 0.91086 0.92483 0.92246 0.90243 0.90643 0.90509 0.91078 0.95453 0.88517 0.89795 0.90235 0.96102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.75 71.98 0.63 -2.20 16 2 C 0.08 2.06 2.27 44.98 0.10 2.16 16 3 H 0.03 0.92 6.45 -2.39 -0.02 0.91 16 4 C -0.08 -2.38 4.20 30.46 0.13 -2.26 16 5 C 0.00 0.09 0.73 -10.92 -0.01 0.08 16 6 C -0.10 -3.82 3.86 31.17 0.12 -3.70 16 7 C 0.01 0.66 2.19 -10.46 -0.02 0.64 16 8 H 0.04 1.95 5.30 -2.39 -0.01 1.94 16 9 C -0.51 -28.00 8.87 25.60 0.23 -27.77 16 10 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 11 C 0.02 1.23 5.47 84.65 0.46 1.69 16 12 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 13 Si 0.93 42.90 27.03 68.60 1.85 44.75 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.25 -10.85 6.78 99.48 0.67 -10.18 16 17 C -0.05 -2.16 6.74 72.73 0.49 -1.67 16 18 S -0.34 -12.71 22.06 -56.49 -1.25 -13.95 16 19 C -0.08 -2.34 4.83 30.46 0.15 -2.19 16 20 C 0.06 1.47 5.30 86.37 0.46 1.93 16 21 N -0.54 -12.43 4.73 -896.64 -4.24 -16.67 16 22 C 0.02 0.37 9.03 127.69 1.15 1.52 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.21 6.32 -2.39 -0.02 1.19 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.07 2.70 6.11 -2.39 -0.01 2.68 16 29 H 0.06 2.28 7.70 -2.39 -0.02 2.26 16 30 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 31 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.07 3.27 8.09 -2.38 -0.02 3.25 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.01 8.02 -2.39 -0.02 1.99 16 35 H 0.03 0.72 7.53 -2.39 -0.02 0.71 16 36 H 0.10 1.90 8.07 -2.39 -0.02 1.88 16 37 H 0.08 1.29 6.21 -2.39 -0.01 1.27 16 38 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 39 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -60.54 302.27 1.52 -59.02 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.97 Total: 15.12 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 3.89 Total: -31.75 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -3.95 Total: -73.20 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.85 Total: 44.75 kcal Atomic # 16 Polarization: -12.71 SS G_CDS: -1.25 Total: -13.95 kcal Total: -60.54 1.52 -59.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.294 kcal (2) G-P(sol) polarization free energy of solvation -60.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds