Wall clock time and date at job start Mon Mar 30 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47550 * 2 1 4 4 C 1.53162 * 109.47645 * 239.98745 * 2 1 3 5 5 C 1.52444 * 109.32172 * 181.88529 * 4 2 1 6 6 C 1.53695 * 110.53116 * 178.90327 * 5 4 2 7 7 C 1.53985 * 108.86812 * 90.97651 * 6 5 4 8 8 H 1.08994 * 109.92973 * 287.41560 * 7 6 5 9 9 C 1.50703 * 110.09813 * 166.17993 * 7 6 5 10 10 H 1.07993 * 120.00046 * 0.91149 * 9 7 6 11 11 C 1.37879 * 119.99623 * 180.91498 * 9 7 6 12 12 N 1.31510 * 120.00340 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99802 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47215 * 59.99778 * 13 11 9 15 15 H 1.48490 * 109.47398 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47019 * 300.00102 * 13 11 9 17 17 C 1.55184 * 106.99654 * 46.75473 * 7 6 5 18 18 S 1.82699 * 109.92323 * 294.47325 * 5 4 2 19 19 C 1.52453 * 110.69852 * 56.09616 * 5 4 2 20 20 C 1.53166 * 109.31986 * 303.90189 * 19 5 4 21 21 N 1.46851 * 109.44698 * 58.12632 * 20 19 5 22 22 C 1.46901 * 110.99928 * 173.58287 * 21 20 19 23 23 H 1.08998 * 109.47477 * 299.99226 * 1 2 3 24 24 H 1.09002 * 109.46627 * 59.99147 * 1 2 3 25 25 H 1.08997 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.49516 * 301.84359 * 4 2 1 27 27 H 1.09004 * 109.49438 * 61.93277 * 4 2 1 28 28 H 1.08997 * 109.62272 * 210.88623 * 6 5 4 29 29 H 1.09005 * 109.61656 * 331.07596 * 6 5 4 30 30 H 0.96997 * 120.00341 * 179.97438 * 12 11 9 31 31 H 1.09002 * 110.84974 * 199.99975 * 17 7 6 32 32 H 1.08994 * 111.03794 * 76.43823 * 17 7 6 33 33 H 1.08999 * 109.49151 * 183.94655 * 19 5 4 34 34 H 1.09003 * 109.51757 * 63.86952 * 19 5 4 35 35 H 1.09006 * 109.47070 * 298.13462 * 20 19 5 36 36 H 1.08997 * 109.47169 * 178.11992 * 20 19 5 37 37 H 1.08998 * 109.47102 * 184.36739 * 22 21 20 38 38 H 1.08998 * 109.47031 * 304.36839 * 22 21 20 39 39 H 1.09004 * 109.47234 * 64.36756 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2504 5 6 3.5644 -0.7613 -1.2233 6 6 4.1064 -1.5053 -2.4541 7 6 4.3506 -0.4876 -3.5837 8 1 3.3980 -0.1520 -3.9937 9 6 5.1863 -1.1117 -4.6714 10 1 5.5054 -2.1398 -4.5845 11 6 5.5437 -0.3700 -5.7774 12 7 5.1558 0.8821 -5.8829 13 14 6.5791 -1.1438 -7.1260 14 1 5.8591 -2.3116 -7.6944 15 1 6.8240 -0.1447 -8.1969 16 1 7.8769 -1.5906 -6.5589 17 6 5.1089 0.7125 -2.9569 18 16 4.2331 0.9335 -1.3590 19 6 4.0640 -1.4156 0.0598 20 6 3.4864 -0.6703 1.2668 21 7 2.0196 -0.6925 1.1990 22 6 1.4276 -0.1207 2.4157 23 1 -0.3634 0.5137 0.8900 24 1 -0.3632 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6509 -1.7400 -1.2672 27 1 1.7062 -0.1893 -2.1404 28 1 5.0432 -2.0008 -2.1992 29 1 3.3796 -2.2486 -2.7820 30 1 5.4075 1.4039 -6.6608 31 1 5.0103 1.6017 -3.5796 32 1 6.1588 0.4697 -2.7936 33 1 5.1526 -1.3704 0.0911 34 1 3.7421 -2.4567 0.0869 35 1 3.8351 0.3624 1.2571 36 1 3.8151 -1.1564 2.1853 37 1 0.3430 -0.2198 2.3733 38 1 1.8071 -0.6518 3.2886 39 1 1.6935 0.9340 2.4882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259614938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:25 Heat of formation + Delta-G solvation = -16.189002 kcal Electronic energy + Delta-G solvation = -17864.044003 eV Core-core repulsion = 15317.617327 eV Total energy + Delta-G solvation = -2546.426676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19695 -35.86170 -33.28802 -32.24157 -30.99599 -27.50483 -26.52134 -25.42269 -24.40174 -22.62959 -20.86007 -19.55208 -19.23100 -16.43876 -15.76317 -15.41012 -15.06521 -14.62914 -14.35165 -14.05187 -13.58216 -13.29006 -12.73623 -12.46807 -12.34779 -12.00092 -11.93016 -11.73595 -11.50098 -11.39391 -11.02498 -10.93526 -10.86201 -10.70680 -10.42227 -10.37323 -10.00982 -9.83004 -9.38839 -9.29796 -8.76766 -8.47055 -8.06482 -6.86812 -6.13345 -4.19651 2.75693 3.25106 3.31257 3.33101 3.48134 4.07116 4.34367 4.97106 4.99806 5.16103 5.19584 5.30141 5.48492 5.52379 5.59228 5.67862 5.77132 5.84345 5.86970 5.94334 6.01217 6.13370 6.18331 6.24188 6.29998 6.35934 6.45956 6.52450 6.57048 6.72346 6.77705 6.88399 7.25612 7.29929 7.40650 7.64501 7.84538 8.21147 8.82268 9.45745 10.94268 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.041957 B = 0.005644 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.184713 B = 4959.570632 C = 5017.980659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 H 0.052 0.948 4 C -0.084 4.084 5 C -0.002 4.002 6 C -0.112 4.112 7 C 0.049 3.951 8 H 0.040 0.960 9 C -0.515 4.515 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.023 4.023 18 S -0.369 6.369 19 C -0.091 4.091 20 C 0.056 3.944 21 N -0.539 5.539 22 C 0.023 3.977 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.264 0.736 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 -2.300 12.015 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 H 0.070 0.930 4 C -0.124 4.124 5 C -0.111 4.111 6 C -0.150 4.150 7 C 0.029 3.971 8 H 0.058 0.942 9 C -0.555 4.555 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.171 4.171 18 S -0.141 6.141 19 C -0.130 4.130 20 C -0.072 4.072 21 N -0.264 5.264 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.137 -1.632 12.588 14.099 hybrid contribution 1.046 -0.359 -1.471 1.841 sum -5.091 -1.991 11.117 12.388 Atomic orbital electron populations 1.21903 0.94729 1.02181 1.01491 1.21700 0.94743 0.96378 0.90032 0.93029 1.21599 0.92905 1.00850 0.97014 1.22838 0.97019 0.93030 0.98243 1.22439 1.00143 0.99326 0.93114 1.19663 0.96331 0.89279 0.91786 0.94197 1.20995 1.33258 0.98093 1.03155 0.92256 1.24999 0.95830 0.94875 0.98088 1.69902 1.45179 1.07783 1.29642 0.86596 0.80748 0.79015 0.81339 1.20140 1.21206 1.20153 1.24622 0.99221 1.04717 0.88508 1.86921 1.69158 1.20586 1.37454 1.21564 1.00109 0.99124 0.92227 1.22135 0.86969 0.99714 0.98358 1.61959 1.07182 1.55215 1.02079 1.22381 1.00381 0.97181 0.92579 0.92844 0.92089 0.92030 0.91122 0.90584 0.91962 0.91715 0.92634 0.87735 0.91533 0.90927 0.90994 0.93882 0.91262 0.91206 0.91908 0.96014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.75 37.16 0.33 -1.46 16 2 C 0.08 1.18 2.28 -67.65 -0.15 1.02 16 3 H 0.05 0.87 7.24 -51.93 -0.38 0.50 16 4 C -0.08 -1.39 4.09 -26.93 -0.11 -1.50 16 5 C 0.00 -0.03 0.71 -90.82 -0.06 -0.09 16 6 C -0.11 -2.25 4.79 -25.86 -0.12 -2.37 16 7 C 0.05 1.19 2.49 -90.10 -0.22 0.97 16 8 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 9 C -0.52 -13.56 8.55 -34.44 -0.29 -13.86 16 10 H 0.06 1.54 7.76 -52.49 -0.41 1.13 16 11 C 0.07 1.73 5.32 -17.82 -0.09 1.64 16 12 N -0.89 -24.61 11.86 55.43 0.66 -23.96 16 13 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.02 -0.55 6.12 38.31 0.23 -0.31 16 18 S -0.37 -7.52 19.85 -107.50 -2.13 -9.65 16 19 C -0.09 -1.42 4.78 -26.92 -0.13 -1.55 16 20 C 0.06 0.81 5.29 -3.76 -0.02 0.79 16 21 N -0.54 -7.50 4.73 -234.75 -1.11 -8.61 16 22 C 0.02 0.26 9.03 60.07 0.54 0.81 16 23 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.26 7.79 -51.93 -0.40 0.85 16 29 H 0.06 1.25 7.87 -51.93 -0.41 0.84 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.10 2.70 7.13 -51.93 -0.37 2.33 16 32 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.69 7.24 -51.93 -0.38 0.31 16 36 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.07 0.72 6.21 -51.93 -0.32 0.40 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -26.81 304.74 -9.90 -36.71 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.77 Total: 1.21 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.11 Total: -15.91 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: -0.45 Total: -32.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -2.13 Total: -9.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.81 -9.90 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.521 kcal (2) G-P(sol) polarization free energy of solvation -26.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds