Wall clock time and date at job start Mon Mar 30 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47550 * 2 1 4 4 C 1.53162 * 109.47645 * 239.98745 * 2 1 3 5 5 C 1.52444 * 109.32172 * 181.88529 * 4 2 1 6 6 C 1.53695 * 110.53116 * 178.90327 * 5 4 2 7 7 C 1.53985 * 108.86812 * 90.97651 * 6 5 4 8 8 H 1.08994 * 109.92973 * 287.41560 * 7 6 5 9 9 C 1.50703 * 110.09813 * 166.17993 * 7 6 5 10 10 H 1.07993 * 120.00046 * 0.91149 * 9 7 6 11 11 C 1.37879 * 119.99623 * 180.91498 * 9 7 6 12 12 N 1.31510 * 120.00340 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99802 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47215 * 59.99778 * 13 11 9 15 15 H 1.48490 * 109.47398 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47019 * 300.00102 * 13 11 9 17 17 C 1.55184 * 106.99654 * 46.75473 * 7 6 5 18 18 S 1.82699 * 109.92323 * 294.47325 * 5 4 2 19 19 C 1.52453 * 110.69852 * 56.09616 * 5 4 2 20 20 C 1.53166 * 109.31986 * 303.90189 * 19 5 4 21 21 N 1.46851 * 109.44698 * 58.12632 * 20 19 5 22 22 C 1.46901 * 110.99928 * 173.58287 * 21 20 19 23 23 H 1.08998 * 109.47477 * 299.99226 * 1 2 3 24 24 H 1.09002 * 109.46627 * 59.99147 * 1 2 3 25 25 H 1.08997 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.49516 * 301.84359 * 4 2 1 27 27 H 1.09004 * 109.49438 * 61.93277 * 4 2 1 28 28 H 1.08997 * 109.62272 * 210.88623 * 6 5 4 29 29 H 1.09005 * 109.61656 * 331.07596 * 6 5 4 30 30 H 0.96997 * 120.00341 * 179.97438 * 12 11 9 31 31 H 1.09002 * 110.84974 * 199.99975 * 17 7 6 32 32 H 1.08994 * 111.03794 * 76.43823 * 17 7 6 33 33 H 1.08999 * 109.49151 * 183.94655 * 19 5 4 34 34 H 1.09003 * 109.51757 * 63.86952 * 19 5 4 35 35 H 1.09006 * 109.47070 * 298.13462 * 20 19 5 36 36 H 1.08997 * 109.47169 * 178.11992 * 20 19 5 37 37 H 1.08998 * 109.47102 * 184.36739 * 22 21 20 38 38 H 1.08998 * 109.47031 * 304.36839 * 22 21 20 39 39 H 1.09004 * 109.47234 * 64.36756 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2504 5 6 3.5644 -0.7613 -1.2233 6 6 4.1064 -1.5053 -2.4541 7 6 4.3506 -0.4876 -3.5837 8 1 3.3980 -0.1520 -3.9937 9 6 5.1863 -1.1117 -4.6714 10 1 5.5054 -2.1398 -4.5845 11 6 5.5437 -0.3700 -5.7774 12 7 5.1558 0.8821 -5.8829 13 14 6.5791 -1.1438 -7.1260 14 1 5.8591 -2.3116 -7.6944 15 1 6.8240 -0.1447 -8.1969 16 1 7.8769 -1.5906 -6.5589 17 6 5.1089 0.7125 -2.9569 18 16 4.2331 0.9335 -1.3590 19 6 4.0640 -1.4156 0.0598 20 6 3.4864 -0.6703 1.2668 21 7 2.0196 -0.6925 1.1990 22 6 1.4276 -0.1207 2.4157 23 1 -0.3634 0.5137 0.8900 24 1 -0.3632 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6509 -1.7400 -1.2672 27 1 1.7062 -0.1893 -2.1404 28 1 5.0432 -2.0008 -2.1992 29 1 3.3796 -2.2486 -2.7820 30 1 5.4075 1.4039 -6.6608 31 1 5.0103 1.6017 -3.5796 32 1 6.1588 0.4697 -2.7936 33 1 5.1526 -1.3704 0.0911 34 1 3.7421 -2.4567 0.0869 35 1 3.8351 0.3624 1.2571 36 1 3.8151 -1.1564 2.1853 37 1 0.3430 -0.2198 2.3733 38 1 1.8071 -0.6518 3.2886 39 1 1.6935 0.9340 2.4882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259614938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:24 Heat of formation + Delta-G solvation = -30.604124 kcal Electronic energy + Delta-G solvation = -17864.669090 eV Core-core repulsion = 15317.617327 eV Total energy + Delta-G solvation = -2547.051763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43468 -37.49355 -34.98213 -33.39818 -32.74629 -28.84185 -27.70595 -27.43097 -25.81132 -23.91253 -22.32783 -20.99838 -20.74696 -18.43985 -17.24844 -16.65438 -16.40508 -16.25137 -15.90764 -15.31378 -15.02060 -14.82535 -14.30362 -13.99128 -13.66182 -13.47344 -13.05369 -12.94396 -12.91522 -12.83930 -12.69545 -12.57758 -12.50576 -12.08768 -11.93648 -11.86321 -11.64329 -11.33084 -11.13672 -10.90351 -10.67691 -10.37681 -9.21821 -8.56418 -8.17153 -6.31629 1.14208 1.42292 1.42732 1.51047 1.69302 2.40429 2.99211 3.12979 3.68747 3.71442 3.94579 4.12148 4.34008 4.35862 4.45251 4.48453 4.55889 4.61692 4.64542 4.72351 4.76643 4.81313 4.87329 4.92399 4.98893 5.03035 5.04310 5.11115 5.14270 5.21935 5.24212 5.39499 5.44940 5.65319 5.80797 6.16019 6.18802 6.20887 6.76614 7.37504 8.88889 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.041957 B = 0.005644 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.184713 B = 4959.570632 C = 5017.980659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.027 0.973 4 C -0.083 4.083 5 C 0.006 3.994 6 C -0.104 4.104 7 C 0.048 3.952 8 H 0.007 0.993 9 C -0.533 4.533 10 H 0.061 0.939 11 C 0.017 3.983 12 N -0.917 5.917 13 Si 0.959 3.041 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.270 1.270 17 C -0.021 4.021 18 S -0.362 6.362 19 C -0.088 4.088 20 C 0.060 3.940 21 N -0.540 5.540 22 C 0.022 3.978 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.024 0.976 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -3.874 13.604 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.045 0.955 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.142 4.142 7 C 0.028 3.972 8 H 0.025 0.975 9 C -0.572 4.572 10 H 0.080 0.920 11 C -0.183 4.183 12 N -0.556 5.556 13 Si 0.784 3.216 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.170 4.170 18 S -0.134 6.134 19 C -0.127 4.127 20 C -0.069 4.069 21 N -0.265 5.265 22 C -0.126 4.126 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.042 0.958 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.728 -3.215 14.195 16.034 hybrid contribution 1.180 0.137 -1.920 2.258 sum -5.548 -3.078 12.275 13.818 Atomic orbital electron populations 1.21860 0.92584 1.02979 1.02308 1.21611 0.96443 0.94668 0.89796 0.95507 1.21580 0.91676 1.01655 0.97339 1.22992 0.98004 0.90684 0.98620 1.22307 1.00667 0.98534 0.92732 1.19577 0.94392 0.90389 0.92864 0.97482 1.21354 1.33440 0.98323 1.04073 0.92038 1.25787 0.96936 0.95247 1.00342 1.70043 1.46323 1.09023 1.30199 0.85596 0.79304 0.78211 0.78512 1.19380 1.21130 1.19462 1.24230 0.98957 1.03317 0.90454 1.86859 1.68778 1.23336 1.34426 1.21563 1.00098 0.99885 0.91193 1.22114 0.87405 0.98596 0.98736 1.61998 1.06791 1.55112 1.02584 1.22479 1.01221 0.96974 0.91892 0.91196 0.92227 0.91159 0.89654 0.92624 0.91808 0.90774 0.92764 0.90770 0.92636 0.91144 0.89267 0.95814 0.88715 0.89771 0.90172 0.96536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.75 71.98 0.63 -2.46 16 2 C 0.08 2.32 2.28 44.98 0.10 2.43 16 3 H 0.03 0.89 7.24 -2.39 -0.02 0.87 16 4 C -0.08 -2.64 4.09 30.46 0.12 -2.52 16 5 C 0.01 0.22 0.71 -10.93 -0.01 0.22 16 6 C -0.10 -4.16 4.79 31.16 0.15 -4.01 16 7 C 0.05 2.38 2.49 -10.46 -0.03 2.35 16 8 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 9 C -0.53 -28.51 8.55 25.60 0.22 -28.29 16 10 H 0.06 3.19 7.76 -2.91 -0.02 3.16 16 11 C 0.02 0.91 5.32 84.66 0.45 1.36 16 12 N -0.92 -52.49 11.86 21.45 0.25 -52.24 16 13 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 15 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 C -0.02 -1.05 6.12 72.73 0.44 -0.61 16 18 S -0.36 -14.96 19.85 -56.49 -1.12 -16.08 16 19 C -0.09 -2.55 4.78 30.47 0.15 -2.41 16 20 C 0.06 1.56 5.29 86.37 0.46 2.01 16 21 N -0.54 -13.45 4.73 -896.62 -4.24 -17.69 16 22 C 0.02 0.43 9.03 127.69 1.15 1.58 16 23 H 0.07 1.32 6.32 -2.39 -0.02 1.30 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 2.52 7.79 -2.39 -0.02 2.50 16 29 H 0.07 2.80 7.87 -2.38 -0.02 2.79 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.07 4.06 7.13 -2.39 -0.02 4.04 16 32 H 0.05 2.77 8.10 -2.39 -0.02 2.75 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.02 0.72 7.24 -2.38 -0.02 0.70 16 36 H 0.09 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.08 1.41 6.21 -2.39 -0.01 1.40 16 38 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 39 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -58.41 304.74 1.75 -56.66 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.00 Total: 15.07 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.84 Total: -30.34 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -3.99 Total: -69.93 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -14.96 SS G_CDS: -1.12 Total: -16.08 kcal Total: -58.41 1.75 -56.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.053 kcal (2) G-P(sol) polarization free energy of solvation -58.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds