Wall clock time and date at job start Mon Mar 30 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46868 * 269.99547 * 3 2 1 5 5 H 1.48491 * 109.47168 * 29.99772 * 3 2 1 6 6 H 1.48495 * 109.47308 * 150.00121 * 3 2 1 7 7 C 1.37877 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00551 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99596 * 359.97438 * 7 2 1 10 10 H 1.08996 * 108.73079 * 301.57628 * 9 7 2 11 11 C 1.45876 * 108.84228 * 60.00268 * 9 7 2 12 12 C 1.54528 * 111.60992 * 182.35375 * 11 9 7 13 13 C 1.50588 * 108.83718 * 282.66681 * 12 11 9 14 14 C 1.53923 * 112.87460 * 91.84273 * 13 12 11 15 15 N 1.47931 * 113.33133 * 317.74155 * 14 13 12 16 16 C 1.46900 * 111.00224 * 192.19125 * 15 14 13 17 17 H 1.08991 * 109.60768 * 71.80209 * 16 15 14 18 18 C 1.53863 * 109.60861 * 191.96289 * 16 15 14 19 19 C 1.55145 * 106.89580 * 167.17251 * 18 16 15 20 20 S 1.83454 * 102.20402 * 317.88324 * 19 18 16 21 21 C 1.54282 * 109.60644 * 311.46139 * 16 15 14 22 22 C 1.44304 * 113.64983 * 318.14576 * 15 14 13 23 23 H 0.97001 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.03757 * 302.87725 * 11 9 7 25 25 H 1.08998 * 109.04598 * 61.82665 * 11 9 7 26 26 H 1.09002 * 109.56736 * 42.54859 * 12 11 9 27 27 H 1.08998 * 109.57145 * 162.92265 * 12 11 9 28 28 H 1.08996 * 108.83323 * 330.96239 * 13 12 11 29 29 H 1.09003 * 108.72975 * 212.65083 * 13 12 11 30 30 H 1.09001 * 108.70857 * 196.74872 * 14 13 12 31 31 H 1.08994 * 108.61116 * 78.66977 * 14 13 12 32 32 H 1.08989 * 109.97504 * 286.53253 * 18 16 15 33 33 H 1.09000 * 109.97433 * 47.81552 * 18 16 15 34 34 H 1.09000 * 110.85738 * 199.70252 * 19 18 16 35 35 H 1.08996 * 111.02838 * 76.14077 * 19 18 16 36 36 H 1.08999 * 110.40347 * 330.92060 * 21 16 15 37 37 H 1.08998 * 110.39721 * 93.22215 * 21 16 15 38 38 H 1.09004 * 109.69214 * 335.69311 * 22 15 14 39 39 H 1.09003 * 109.73221 * 215.12698 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6082 -2.5314 0.8814 11 6 0.4172 -2.5628 -1.1936 12 6 -0.4307 -3.8542 -1.2279 13 6 0.4495 -5.0029 -1.6446 14 6 1.0847 -5.7345 -0.4485 15 7 1.5817 -4.8187 0.6016 16 6 2.4249 -5.5345 1.5684 17 1 3.3771 -5.7907 1.1040 18 6 2.6768 -4.6407 2.7952 19 6 3.2784 -5.5494 3.8993 20 16 2.2514 -7.0630 3.7581 21 6 1.7090 -6.8223 2.0260 22 6 2.2625 -3.6573 0.0821 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2485 -1.6998 -1.2091 25 1 1.0570 -2.5341 -2.0755 26 1 -0.8411 -4.0479 -0.2368 27 1 -1.2430 -3.7387 -1.9454 28 1 1.2445 -4.6223 -2.2858 29 1 -0.1493 -5.7142 -2.2135 30 1 1.9178 -6.3373 -0.8098 31 1 0.3387 -6.3973 -0.0101 32 1 3.3806 -3.8485 2.5404 33 1 1.7375 -4.2081 3.1398 34 1 3.1640 -5.0931 4.8825 35 1 4.3261 -5.7709 3.6957 36 1 0.6277 -6.6924 1.9811 37 1 2.0154 -7.6670 1.4092 38 1 2.6522 -3.8743 -0.9125 39 1 3.0824 -3.3836 0.7461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259664543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:25 Heat of formation + Delta-G solvation = -19.524846 kcal Electronic energy + Delta-G solvation = -18033.934667 eV Core-core repulsion = 15487.363338 eV Total energy + Delta-G solvation = -2546.571329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42544 -37.37446 -35.15493 -33.36211 -32.60063 -30.14562 -28.00119 -25.87990 -25.79116 -24.20409 -21.62220 -20.96236 -20.28899 -18.50059 -17.64397 -17.07993 -16.88420 -16.35564 -15.55637 -15.33679 -14.87600 -14.71735 -14.42826 -14.00338 -13.75077 -13.63621 -13.21341 -13.12480 -12.85421 -12.79325 -12.66330 -12.39268 -12.18028 -12.12693 -11.83396 -11.54605 -11.36875 -11.22093 -11.16419 -10.75737 -10.53952 -10.25281 -8.96209 -8.69116 -8.01723 -6.17786 0.86659 1.38270 1.40978 1.42391 1.51369 2.44303 2.98108 3.23361 3.59597 3.84022 3.96109 4.03944 4.11959 4.20290 4.24197 4.42422 4.46833 4.55326 4.62194 4.66018 4.78766 4.81627 4.86198 4.92806 4.99763 5.07468 5.17346 5.23754 5.24647 5.41457 5.60814 5.68022 5.88071 6.06037 6.28123 6.36936 6.44955 6.59635 7.01083 7.50494 8.99751 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.006706 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.980326 B = 4174.486860 C = 5084.132438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.060 3.940 10 H -0.003 1.003 11 C -0.100 4.100 12 C -0.104 4.104 13 C -0.111 4.111 14 C 0.065 3.935 15 N -0.548 5.548 16 C 0.088 3.912 17 H 0.052 0.948 18 C -0.120 4.120 19 C -0.054 4.054 20 S -0.327 6.327 21 C -0.052 4.052 22 C 0.088 3.912 23 H 0.258 0.742 24 H 0.058 0.942 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.025 0.975 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -12.839 1.863 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.067 0.933 9 C 0.041 3.959 10 H 0.015 0.985 11 C -0.138 4.138 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.061 4.061 15 N -0.273 5.273 16 C -0.022 4.022 17 H 0.070 0.930 18 C -0.159 4.159 19 C -0.202 4.202 20 S -0.103 6.103 21 C -0.200 4.200 22 C -0.040 4.040 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.043 0.957 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.770 -13.432 2.871 14.243 hybrid contribution 1.101 1.975 -1.259 2.588 sum 4.871 -11.457 1.612 12.554 Atomic orbital electron populations 1.69994 1.07104 1.26750 1.51781 1.25662 0.95557 1.02097 0.95243 0.85722 0.78844 0.79995 0.78080 1.20356 1.21198 1.19285 1.21704 0.92904 0.92478 1.49934 0.93258 1.17464 0.93150 0.91023 0.94281 0.98490 1.20537 0.98415 0.97393 0.97469 1.21250 0.97567 0.95207 1.00190 1.21359 0.98902 0.97641 0.96952 1.22432 0.98767 0.93814 0.91126 1.60806 1.40669 1.07994 1.17844 1.22410 0.94390 0.91748 0.93635 0.92984 1.22549 1.01836 0.98188 0.93298 1.24212 1.00721 0.92596 1.02653 1.87488 1.65180 1.37027 1.20567 1.24051 1.03938 0.99445 0.92591 1.21747 0.95728 0.89907 0.96575 0.93265 0.92313 0.96410 0.93154 0.93200 0.93470 0.89741 0.94175 0.90022 0.90054 0.91334 0.86896 0.87592 0.88459 0.87372 0.95680 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.25 11.21 21.45 0.24 -53.01 16 2 C 0.01 0.69 5.27 84.66 0.45 1.14 16 3 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -28.90 8.39 25.60 0.21 -28.68 16 8 H 0.05 2.62 7.68 -2.91 -0.02 2.60 16 9 C 0.06 2.95 1.75 -13.39 -0.02 2.92 16 10 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 11 C -0.10 -4.77 4.42 28.93 0.13 -4.64 16 12 C -0.10 -3.97 5.63 30.33 0.17 -3.79 16 13 C -0.11 -3.35 5.28 30.12 0.16 -3.19 16 14 C 0.07 1.82 4.66 86.42 0.40 2.22 16 15 N -0.55 -18.10 3.87 -866.79 -3.35 -21.45 16 16 C 0.09 2.40 2.24 45.64 0.10 2.51 16 17 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 18 C -0.12 -3.36 5.42 31.62 0.17 -3.19 16 19 C -0.05 -1.20 7.38 72.72 0.54 -0.67 16 20 S -0.33 -8.25 23.26 -56.49 -1.31 -9.57 16 21 C -0.05 -1.25 5.62 72.42 0.41 -0.84 16 22 C 0.09 3.50 4.45 87.12 0.39 3.89 16 23 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.06 3.24 5.72 -2.39 -0.01 3.23 16 25 H 0.02 0.83 7.59 -2.39 -0.02 0.81 16 26 H 0.05 2.03 7.78 -2.39 -0.02 2.01 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.51 6.66 -2.39 -0.02 1.49 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 0.98 8.02 -2.39 -0.02 0.97 16 31 H 0.08 2.01 6.83 -2.39 -0.02 2.00 16 32 H 0.08 2.39 6.81 -2.39 -0.02 2.37 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 2.49 7.23 -2.39 -0.02 2.47 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.02 0.98 6.79 -2.39 -0.02 0.97 16 39 H 0.05 2.17 5.73 -2.39 -0.01 2.16 16 Total: -1.00 -59.55 299.89 1.71 -57.84 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.01 Total: 12.93 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 3.10 Total: -32.33 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -3.11 Total: -74.46 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.31 Total: -9.57 kcal Total: -59.55 1.71 -57.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259664543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.314 kcal (2) G-P(sol) polarization free energy of solvation -59.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds