Wall clock time and date at job start Mon Mar 30 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46848 * 110.99727 * 2 1 4 4 C 1.53036 * 109.54892 * 185.88835 * 3 2 1 5 5 C 1.53137 * 109.24930 * 300.74215 * 4 3 2 6 6 C 1.52996 * 109.17185 * 57.51458 * 5 4 3 7 7 C 1.52976 * 109.62446 * 62.98760 * 6 5 4 8 8 C 1.52609 * 109.95308 * 56.85029 * 7 6 5 9 9 H 1.09001 * 109.22640 * 310.21489 * 8 7 6 10 10 C 1.50699 * 109.22766 * 190.85513 * 8 7 6 11 11 H 1.08003 * 119.99982 * 359.97438 * 10 8 7 12 12 C 1.37880 * 119.99996 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00107 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00009 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47012 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47291 * 119.99430 * 14 12 10 17 17 H 1.48498 * 109.47201 * 239.99682 * 14 12 10 18 18 C 1.52573 * 110.72590 * 70.53184 * 8 7 6 19 19 C 1.53105 * 109.99982 * 289.31768 * 18 8 7 20 20 S 1.81650 * 109.43686 * 182.48501 * 6 5 4 21 21 C 1.46869 * 111.00117 * 124.20566 * 2 1 3 22 22 H 1.09001 * 109.47681 * 295.78510 * 1 2 3 23 23 H 1.09003 * 109.47500 * 55.79584 * 1 2 3 24 24 H 1.09003 * 109.46724 * 175.79093 * 1 2 3 25 25 H 1.09006 * 109.45900 * 305.91513 * 3 2 1 26 26 H 1.09005 * 109.45696 * 65.86282 * 3 2 1 27 27 H 1.09000 * 109.50748 * 60.67570 * 4 3 2 28 28 H 1.09007 * 109.50688 * 180.81389 * 4 3 2 29 29 H 1.09000 * 109.52064 * 297.60201 * 5 4 3 30 30 H 1.09003 * 109.51682 * 177.42083 * 5 4 3 31 31 H 1.08995 * 109.39333 * 177.00010 * 7 6 5 32 32 H 1.09007 * 109.39305 * 296.70796 * 7 6 5 33 33 H 0.96995 * 120.00026 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.38041 * 169.15653 * 18 8 7 35 35 H 1.09001 * 109.38271 * 49.48168 * 18 8 7 36 36 H 1.08997 * 109.58026 * 303.24619 * 19 18 8 37 37 H 1.09004 * 109.68952 * 182.91414 * 19 18 8 38 38 H 1.09002 * 109.45801 * 54.34890 * 21 2 1 39 39 H 1.08994 * 109.46047 * 294.39338 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5179 1.3350 -0.1480 5 6 4.1194 0.5391 1.0139 6 6 3.5173 -0.8673 1.0244 7 6 3.8965 -1.5982 -0.2648 8 6 5.4147 -1.6358 -0.4149 9 1 5.8146 -0.6322 -0.2704 10 6 5.7647 -2.1138 -1.8006 11 1 4.9804 -2.3645 -2.4995 12 6 7.0862 -2.2320 -2.1757 13 7 8.0412 -1.9272 -1.3245 14 14 7.5201 -2.8237 -3.8936 15 1 6.2733 -3.0986 -4.6520 16 1 8.3055 -1.7763 -4.5943 17 1 8.3262 -4.0673 -3.7998 18 6 6.0357 -2.5768 0.6130 19 6 5.9281 -1.9673 2.0133 20 16 4.1706 -1.7940 2.4436 21 6 1.9953 -0.7708 1.1340 22 1 -0.3634 0.4470 0.9253 23 1 -0.3634 0.5777 -0.8499 24 1 -0.3633 -1.0249 -0.0754 25 1 1.5624 1.9260 -0.8324 26 1 1.7329 1.8606 0.9379 27 1 3.7808 0.8567 -1.0915 28 1 3.9092 2.3523 -0.1334 29 1 3.8917 1.0399 1.9549 30 1 5.2001 0.4718 0.8883 31 1 3.5109 -2.6171 -0.2301 32 1 3.4614 -1.0770 -1.1177 33 1 8.9709 -2.0107 -1.5883 34 1 7.0856 -2.7378 0.3682 35 1 5.5107 -3.5319 0.5928 36 1 6.4049 -0.9872 2.0227 37 1 6.4187 -2.6190 2.7363 38 1 1.5662 -1.7727 1.1224 39 1 1.7292 -0.2728 2.0663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:06 Heat of formation + Delta-G solvation = -11.101881 kcal Electronic energy + Delta-G solvation = -18288.047450 eV Core-core repulsion = 15741.841368 eV Total energy + Delta-G solvation = -2546.206082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25312 -35.95728 -33.18412 -31.70446 -30.93749 -28.34204 -26.60857 -25.14064 -22.94293 -22.68254 -22.06032 -19.63280 -18.01740 -16.55418 -16.25572 -15.31775 -14.78855 -14.55029 -14.24069 -13.96033 -13.51358 -13.25573 -12.98770 -12.50165 -12.29525 -12.21980 -11.97970 -11.62212 -11.52209 -11.40889 -10.95393 -10.84564 -10.68242 -10.54219 -10.31726 -10.03302 -9.85913 -9.44516 -9.19640 -8.92781 -8.67838 -8.26037 -8.09120 -7.02898 -5.98976 -4.06138 2.43044 3.24133 3.29020 3.37523 3.41967 4.18377 4.43015 4.98650 5.13489 5.26465 5.28657 5.31309 5.51750 5.53507 5.63201 5.75905 5.87339 5.89681 5.93238 5.96026 6.06370 6.10278 6.15038 6.35214 6.45106 6.59263 6.67626 6.70783 6.85092 7.12954 7.18796 7.20479 7.25805 7.44794 7.72017 7.97753 8.11349 8.45476 8.98229 9.58608 11.04622 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.007920 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.610566 B = 3534.705108 C = 4203.439190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.534 5.534 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.002 4.002 7 C -0.090 4.090 8 C 0.039 3.961 9 H 0.031 0.969 10 C -0.504 4.504 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.117 4.117 19 C -0.059 4.059 20 S -0.314 6.314 21 C 0.085 3.915 22 H 0.020 0.980 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.259 0.741 34 H 0.108 0.892 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 4.898 4.651 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.259 5.259 3 C -0.070 4.070 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.128 4.128 8 C 0.021 3.979 9 H 0.049 0.951 10 C -0.542 4.542 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.156 4.156 19 C -0.207 4.207 20 S -0.086 6.086 21 C -0.044 4.044 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.964 4.267 5.184 12.015 hybrid contribution 0.720 0.435 -1.075 1.365 sum -9.245 4.702 4.109 11.156 Atomic orbital electron populations 1.22328 0.87543 1.02160 1.00006 1.61839 1.06953 1.13708 1.43374 1.22113 0.96337 0.88817 0.99730 1.21653 0.93505 0.99818 1.00612 1.21903 1.01621 0.93471 0.97814 1.22606 0.95480 0.96687 0.96434 1.21759 0.99363 0.98317 0.93387 1.18713 0.88930 0.95871 0.94427 0.95063 1.21248 0.91739 1.43681 0.97511 0.92573 1.24957 0.96582 0.95490 0.97080 1.69834 0.99624 1.49296 1.34425 0.86579 0.78436 0.78375 0.84906 1.19769 1.21126 1.21119 1.21878 1.05841 0.98237 0.89669 1.23541 0.90501 1.03850 1.02806 1.86113 1.13647 1.75549 1.33251 1.21808 0.93291 0.98406 0.90879 0.96137 0.91458 0.91408 0.91013 0.95466 0.89645 0.91778 0.92566 0.90187 0.93003 0.90721 0.93099 0.87424 0.93969 0.90863 0.89943 0.90362 0.94998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.59 60.06 0.58 0.90 16 2 N -0.53 -7.83 4.18 -243.03 -1.02 -8.85 16 3 C 0.06 0.79 5.46 -3.83 -0.02 0.77 16 4 C -0.12 -1.79 5.75 -26.64 -0.15 -1.95 16 5 C -0.11 -1.86 4.36 -26.66 -0.12 -1.98 16 6 C 0.00 -0.04 0.60 -90.69 -0.05 -0.09 16 7 C -0.09 -1.87 3.38 -26.94 -0.09 -1.96 16 8 C 0.04 0.93 1.71 -92.19 -0.16 0.77 16 9 H 0.03 0.80 5.79 -51.93 -0.30 0.50 16 10 C -0.50 -13.47 8.52 -34.44 -0.29 -13.76 16 11 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.60 5.25 -17.82 -0.09 1.50 16 13 N -0.89 -24.67 11.19 55.43 0.62 -24.05 16 14 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.12 -2.71 4.91 -26.90 -0.13 -2.84 16 19 C -0.06 -1.17 6.09 37.21 0.23 -0.95 16 20 S -0.31 -5.88 21.10 -107.50 -2.27 -8.15 16 21 C 0.09 1.35 4.20 -3.90 -0.02 1.33 16 22 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.07 0.70 8.09 -51.93 -0.42 0.27 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 1.51 6.69 -51.93 -0.35 1.17 16 28 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.54 5.14 -51.93 -0.27 1.28 16 31 H 0.05 1.13 8.06 -51.93 -0.42 0.71 16 32 H 0.07 1.60 6.09 -51.93 -0.32 1.28 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 34 H 0.11 2.79 5.70 -51.93 -0.30 2.49 16 35 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 36 H 0.07 1.47 7.50 -51.93 -0.39 1.08 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 297.51 15.07 4.48 4.48 Total: -1.00 -26.99 297.51 -10.04 -37.04 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.52 Total: 1.76 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.33 Total: -18.25 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.40 Total: -32.90 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -2.27 Total: -8.15 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.99 -10.04 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.935 kcal (2) G-P(sol) polarization free energy of solvation -26.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds