Wall clock time and date at job start Mon Mar 30 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46848 * 110.99727 * 2 1 4 4 C 1.53036 * 109.54892 * 185.88835 * 3 2 1 5 5 C 1.53137 * 109.24930 * 300.74215 * 4 3 2 6 6 C 1.52996 * 109.17185 * 57.51458 * 5 4 3 7 7 C 1.52976 * 109.62446 * 62.98760 * 6 5 4 8 8 C 1.52609 * 109.95308 * 56.85029 * 7 6 5 9 9 H 1.09001 * 109.22640 * 310.21489 * 8 7 6 10 10 C 1.50699 * 109.22766 * 190.85513 * 8 7 6 11 11 H 1.08003 * 119.99982 * 359.97438 * 10 8 7 12 12 C 1.37880 * 119.99996 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00107 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00009 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47012 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47291 * 119.99430 * 14 12 10 17 17 H 1.48498 * 109.47201 * 239.99682 * 14 12 10 18 18 C 1.52573 * 110.72590 * 70.53184 * 8 7 6 19 19 C 1.53105 * 109.99982 * 289.31768 * 18 8 7 20 20 S 1.81650 * 109.43686 * 182.48501 * 6 5 4 21 21 C 1.46869 * 111.00117 * 124.20566 * 2 1 3 22 22 H 1.09001 * 109.47681 * 295.78510 * 1 2 3 23 23 H 1.09003 * 109.47500 * 55.79584 * 1 2 3 24 24 H 1.09003 * 109.46724 * 175.79093 * 1 2 3 25 25 H 1.09006 * 109.45900 * 305.91513 * 3 2 1 26 26 H 1.09005 * 109.45696 * 65.86282 * 3 2 1 27 27 H 1.09000 * 109.50748 * 60.67570 * 4 3 2 28 28 H 1.09007 * 109.50688 * 180.81389 * 4 3 2 29 29 H 1.09000 * 109.52064 * 297.60201 * 5 4 3 30 30 H 1.09003 * 109.51682 * 177.42083 * 5 4 3 31 31 H 1.08995 * 109.39333 * 177.00010 * 7 6 5 32 32 H 1.09007 * 109.39305 * 296.70796 * 7 6 5 33 33 H 0.96995 * 120.00026 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.38041 * 169.15653 * 18 8 7 35 35 H 1.09001 * 109.38271 * 49.48168 * 18 8 7 36 36 H 1.08997 * 109.58026 * 303.24619 * 19 18 8 37 37 H 1.09004 * 109.68952 * 182.91414 * 19 18 8 38 38 H 1.09002 * 109.45801 * 54.34890 * 21 2 1 39 39 H 1.08994 * 109.46047 * 294.39338 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5179 1.3350 -0.1480 5 6 4.1194 0.5391 1.0139 6 6 3.5173 -0.8673 1.0244 7 6 3.8965 -1.5982 -0.2648 8 6 5.4147 -1.6358 -0.4149 9 1 5.8146 -0.6322 -0.2704 10 6 5.7647 -2.1138 -1.8006 11 1 4.9804 -2.3645 -2.4995 12 6 7.0862 -2.2320 -2.1757 13 7 8.0412 -1.9272 -1.3245 14 14 7.5201 -2.8237 -3.8936 15 1 6.2733 -3.0986 -4.6520 16 1 8.3055 -1.7763 -4.5943 17 1 8.3262 -4.0673 -3.7998 18 6 6.0357 -2.5768 0.6130 19 6 5.9281 -1.9673 2.0133 20 16 4.1706 -1.7940 2.4436 21 6 1.9953 -0.7708 1.1340 22 1 -0.3634 0.4470 0.9253 23 1 -0.3634 0.5777 -0.8499 24 1 -0.3633 -1.0249 -0.0754 25 1 1.5624 1.9260 -0.8324 26 1 1.7329 1.8606 0.9379 27 1 3.7808 0.8567 -1.0915 28 1 3.9092 2.3523 -0.1334 29 1 3.8917 1.0399 1.9549 30 1 5.2001 0.4718 0.8883 31 1 3.5109 -2.6171 -0.2301 32 1 3.4614 -1.0770 -1.1177 33 1 8.9709 -2.0107 -1.5883 34 1 7.0856 -2.7378 0.3682 35 1 5.5107 -3.5319 0.5928 36 1 6.4049 -0.9872 2.0227 37 1 6.4187 -2.6190 2.7363 38 1 1.5662 -1.7727 1.1224 39 1 1.7292 -0.2728 2.0663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:05 Heat of formation + Delta-G solvation = -25.231158 kcal Electronic energy + Delta-G solvation = -18288.660142 eV Core-core repulsion = 15741.841368 eV Total energy + Delta-G solvation = -2546.818773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58560 -37.59816 -34.74498 -33.44707 -32.35538 -30.09326 -27.68680 -26.94475 -24.68384 -23.92889 -23.42312 -21.35163 -19.49490 -18.43683 -17.81971 -16.65355 -16.50061 -15.98068 -15.54349 -15.37241 -14.98921 -14.70896 -14.68664 -14.03118 -13.77647 -13.51039 -13.44218 -13.16091 -13.11871 -12.85486 -12.70874 -12.37163 -12.26799 -12.13456 -11.77955 -11.63167 -11.47620 -11.20885 -11.03636 -10.75344 -10.42129 -10.19586 -9.19706 -8.58109 -8.05124 -6.20517 0.92337 1.39074 1.42316 1.52738 1.66703 2.43781 3.09924 3.18306 3.65066 3.83546 4.05983 4.16884 4.20540 4.25884 4.36121 4.51353 4.52719 4.60684 4.63815 4.70622 4.75998 4.80180 4.88634 4.96018 5.04268 5.05821 5.08028 5.15766 5.29238 5.36496 5.44933 5.58295 5.64915 6.01442 6.09247 6.14731 6.21364 6.41760 6.90172 7.46946 8.95588 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.007920 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.610566 B = 3534.705108 C = 4203.439190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.553 5.553 3 C 0.062 3.938 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.002 4.002 7 C -0.074 4.074 8 C 0.042 3.958 9 H 0.011 0.989 10 C -0.525 4.525 11 H 0.047 0.953 12 C 0.016 3.984 13 N -0.913 5.913 14 Si 0.947 3.053 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.282 1.282 18 C -0.110 4.110 19 C -0.057 4.057 20 S -0.297 6.297 21 C 0.093 3.907 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.260 0.740 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 5.659 4.936 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.279 5.279 3 C -0.065 4.065 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.112 4.112 7 C -0.113 4.113 8 C 0.024 3.976 9 H 0.029 0.971 10 C -0.563 4.563 11 H 0.065 0.935 12 C -0.182 4.182 13 N -0.554 5.554 14 Si 0.774 3.226 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.149 4.149 19 C -0.205 4.205 20 S -0.068 6.068 21 C -0.036 4.036 22 H 0.051 0.949 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.518 5.031 5.470 13.708 hybrid contribution 1.193 0.204 -1.181 1.691 sum -10.325 5.235 4.290 12.346 Atomic orbital electron populations 1.22384 0.85408 1.02808 1.01291 1.61818 1.08954 1.14274 1.42840 1.22107 0.94576 0.88614 1.01252 1.21620 0.95334 1.00155 0.98215 1.21837 0.99872 0.93341 0.99353 1.22643 0.97490 0.96620 0.94433 1.21503 0.96967 0.97797 0.95018 1.18626 0.90949 0.94611 0.93435 0.97075 1.21563 0.91843 1.44042 0.98880 0.93505 1.25629 0.96548 0.95657 1.00394 1.69954 0.99793 1.49783 1.35829 0.85667 0.78112 0.77937 0.80932 1.19487 1.20662 1.20748 1.21669 1.03709 0.97845 0.91666 1.23374 0.92329 1.03673 1.01122 1.86013 1.11845 1.75815 1.33105 1.21670 0.91137 0.98827 0.91961 0.94880 0.89993 0.91226 0.89163 0.93992 0.92589 0.89907 0.90995 0.92990 0.94379 0.91480 0.93048 0.90290 0.94930 0.91277 0.88262 0.90677 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.59 127.69 1.22 1.81 16 2 N -0.55 -14.94 4.18 -922.81 -3.86 -18.80 16 3 C 0.06 1.52 5.46 86.33 0.47 1.99 16 4 C -0.11 -3.37 5.75 30.65 0.18 -3.19 16 5 C -0.10 -3.50 4.36 30.64 0.13 -3.37 16 6 C 0.00 -0.07 0.60 -10.84 -0.01 -0.08 16 7 C -0.07 -3.12 3.38 30.46 0.10 -3.02 16 8 C 0.04 2.07 1.71 -11.81 -0.02 2.05 16 9 H 0.01 0.60 5.79 -2.39 -0.01 0.59 16 10 C -0.53 -28.83 8.52 25.60 0.22 -28.62 16 11 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 12 C 0.02 0.88 5.25 84.66 0.44 1.32 16 13 N -0.91 -51.63 11.19 21.45 0.24 -51.39 16 14 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 C -0.11 -5.21 4.91 30.49 0.15 -5.06 16 19 C -0.06 -2.26 6.09 72.02 0.44 -1.83 16 20 S -0.30 -10.77 21.10 -56.49 -1.19 -11.97 16 21 C 0.09 2.77 4.20 86.27 0.36 3.13 16 22 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.90 8.08 -2.38 -0.02 1.88 16 26 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 1.99 6.69 -2.39 -0.02 1.97 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.03 5.14 -2.39 -0.01 2.02 16 31 H 0.04 1.68 8.06 -2.39 -0.02 1.66 16 32 H 0.07 2.92 6.09 -2.38 -0.01 2.91 16 33 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.08 4.23 5.70 -2.39 -0.01 4.22 16 35 H 0.03 1.56 8.06 -2.39 -0.02 1.54 16 36 H 0.07 2.80 7.50 -2.39 -0.02 2.78 16 37 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 38 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -57.98 297.51 1.92 -56.06 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.01 Total: 15.30 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.69 Total: -34.85 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -3.62 Total: -70.19 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.19 Total: -11.97 kcal Total: -57.98 1.92 -56.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.833 kcal (2) G-P(sol) polarization free energy of solvation -57.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds