Wall clock time and date at job start Mon Mar 30 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46853 * 110.99643 * 2 1 4 4 C 1.53046 * 109.53381 * 174.08981 * 3 2 1 5 5 C 1.53136 * 109.24820 * 59.27640 * 4 3 2 6 6 C 1.53008 * 109.18030 * 302.48723 * 5 4 3 7 7 C 1.52978 * 109.62639 * 296.96630 * 6 5 4 8 8 C 1.52608 * 109.95824 * 303.14155 * 7 6 5 9 9 H 1.08997 * 109.22661 * 49.79929 * 8 7 6 10 10 C 1.50698 * 109.18725 * 169.17990 * 8 7 6 11 11 H 1.08000 * 120.00026 * 1.21792 * 10 8 7 12 12 C 1.37879 * 120.00071 * 181.22600 * 10 8 7 13 13 N 1.31519 * 119.99807 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00206 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47012 * 89.99633 * 14 12 10 16 16 H 1.48499 * 109.46863 * 209.99902 * 14 12 10 17 17 H 1.48502 * 109.46880 * 329.99635 * 14 12 10 18 18 C 1.52578 * 110.73267 * 289.47866 * 8 7 6 19 19 C 1.53098 * 109.99692 * 70.68414 * 18 8 7 20 20 S 1.81657 * 109.42746 * 177.47178 * 6 5 4 21 21 C 1.46867 * 111.00620 * 235.79286 * 2 1 3 22 22 H 1.09010 * 109.47118 * 56.04927 * 1 2 3 23 23 H 1.08998 * 109.46967 * 176.04206 * 1 2 3 24 24 H 1.08994 * 109.47802 * 296.04787 * 1 2 3 25 25 H 1.09001 * 109.46174 * 54.07683 * 3 2 1 26 26 H 1.08997 * 109.46175 * 294.10685 * 3 2 1 27 27 H 1.08994 * 109.51291 * 179.20995 * 4 3 2 28 28 H 1.09000 * 109.50868 * 299.34732 * 4 3 2 29 29 H 1.08999 * 109.51982 * 62.39666 * 5 4 3 30 30 H 1.08998 * 109.52251 * 182.57634 * 5 4 3 31 31 H 1.08993 * 109.39283 * 63.29191 * 7 6 5 32 32 H 1.09004 * 109.38642 * 182.99885 * 7 6 5 33 33 H 0.96997 * 120.00094 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.38085 * 310.51546 * 18 8 7 35 35 H 1.09005 * 109.29260 * 190.79184 * 18 8 7 36 36 H 1.08999 * 109.57986 * 177.15385 * 19 18 8 37 37 H 1.08991 * 109.69512 * 56.81052 * 19 18 8 38 38 H 1.09006 * 109.45121 * 305.65963 * 21 2 1 39 39 H 1.09001 * 109.45440 * 65.60029 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3347 0.1485 5 6 4.1197 0.5389 -1.0133 6 6 3.5173 -0.8675 -1.0245 7 6 3.8967 -1.5993 0.2641 8 6 5.4150 -1.6376 0.4137 9 1 5.8152 -0.6340 0.2700 10 6 5.7642 -2.1174 1.7989 11 1 4.9799 -2.3870 2.4908 12 6 7.0850 -2.2122 2.1831 13 7 8.0401 -1.8843 1.3405 14 14 7.5180 -2.8063 3.9004 15 1 7.6737 -4.2831 3.8886 16 1 8.7911 -2.1777 4.3353 17 1 6.4332 -2.4304 4.8423 18 6 6.0356 -2.5779 -0.6151 19 6 5.9278 -1.9671 -2.0148 20 16 4.1703 -1.7932 -2.4446 21 6 1.9954 -0.7708 -1.1339 22 1 -0.3634 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 -0.3634 0.4512 0.9232 25 1 1.5623 1.9261 0.8323 26 1 1.7334 1.8605 -0.9381 27 1 3.9095 2.3518 0.1344 28 1 3.7804 0.8561 1.0920 29 1 3.8924 1.0400 -1.9542 30 1 5.2002 0.4713 -0.8874 31 1 3.4620 -1.0787 1.1174 32 1 3.5109 -2.6182 0.2287 33 1 8.9693 -1.9513 1.6105 34 1 5.5104 -3.5329 -0.5955 35 1 7.0856 -2.7376 -0.3698 36 1 6.4175 -2.6203 -2.7371 37 1 6.4052 -0.9874 -2.0258 38 1 1.5662 -1.7727 -1.1223 39 1 1.7292 -0.2728 -2.0662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:07 Heat of formation + Delta-G solvation = -11.332675 kcal Electronic energy + Delta-G solvation = -18286.945874 eV Core-core repulsion = 15740.729784 eV Total energy + Delta-G solvation = -2546.216090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25134 -35.95487 -33.17707 -31.70897 -30.94356 -28.33976 -26.60799 -25.13897 -22.94279 -22.68309 -22.06114 -19.63396 -18.01885 -16.55017 -16.25904 -15.30904 -14.78630 -14.54738 -14.24106 -13.96484 -13.51375 -13.25444 -12.99059 -12.50210 -12.29657 -12.21979 -11.97941 -11.62212 -11.52077 -11.41180 -10.93331 -10.84934 -10.68470 -10.55869 -10.31947 -10.03433 -9.87127 -9.44547 -9.19686 -8.91578 -8.68477 -8.26380 -8.08919 -7.03116 -5.99167 -4.05801 2.42777 3.23766 3.30341 3.37293 3.40925 4.18396 4.43236 4.98663 5.13678 5.26792 5.29046 5.31457 5.50854 5.54066 5.63341 5.75959 5.87054 5.89656 5.93129 5.96152 6.05858 6.10429 6.15183 6.35375 6.44448 6.59406 6.67525 6.70993 6.84805 7.12867 7.18323 7.20570 7.25825 7.43853 7.71888 7.97762 8.09887 8.45283 8.98397 9.58826 11.05132 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.007927 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.522480 B = 3531.589201 C = 4200.525556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.534 5.534 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.002 4.002 7 C -0.090 4.090 8 C 0.039 3.961 9 H 0.032 0.968 10 C -0.505 4.505 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.116 4.116 19 C -0.059 4.059 20 S -0.314 6.314 21 C 0.085 3.915 22 H 0.020 0.980 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.260 0.740 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.785 4.825 -4.700 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.259 5.259 3 C -0.070 4.070 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.128 4.128 8 C 0.021 3.979 9 H 0.050 0.950 10 C -0.543 4.543 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.155 4.155 19 C -0.207 4.207 20 S -0.085 6.085 21 C -0.044 4.044 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.960 4.205 -5.232 12.011 hybrid contribution 0.713 0.423 1.083 1.364 sum -9.246 4.628 -4.150 11.141 Atomic orbital electron populations 1.22329 0.87543 1.01753 1.00414 1.61839 1.06951 1.13735 1.43352 1.22112 0.96330 0.88790 0.99738 1.21653 0.93496 0.99825 1.00617 1.21904 1.01626 0.93465 0.97813 1.22610 0.95485 0.96698 0.96415 1.21760 0.99370 0.98298 0.93401 1.18711 0.88922 0.95907 0.94376 0.94971 1.21202 0.91771 1.43600 0.97723 0.92639 1.24956 0.96581 0.95446 0.97083 1.69844 0.99687 1.48899 1.34743 0.86638 0.77799 0.78868 0.84988 1.20770 1.21334 1.19913 1.21863 1.05583 0.98294 0.89744 1.23536 0.90541 1.03848 1.02796 1.86115 1.13606 1.75598 1.33210 1.21814 0.93301 0.98362 0.90933 0.96115 0.91481 0.91404 0.91010 0.95443 0.91774 0.89640 0.92569 0.90179 0.90706 0.93017 0.93050 0.93919 0.87696 0.89949 0.90829 0.90364 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.62 60.06 0.58 0.91 16 2 N -0.53 -7.83 4.18 -243.03 -1.02 -8.85 16 3 C 0.06 0.79 5.46 -3.83 -0.02 0.77 16 4 C -0.12 -1.80 5.75 -26.64 -0.15 -1.95 16 5 C -0.11 -1.86 4.36 -26.66 -0.12 -1.98 16 6 C 0.00 -0.04 0.60 -90.69 -0.05 -0.09 16 7 C -0.09 -1.87 3.38 -26.94 -0.09 -1.96 16 8 C 0.04 0.93 1.69 -92.19 -0.16 0.78 16 9 H 0.03 0.83 5.79 -51.93 -0.30 0.53 16 10 C -0.50 -13.50 8.50 -34.44 -0.29 -13.79 16 11 H 0.06 1.49 7.73 -52.49 -0.41 1.09 16 12 C 0.06 1.62 5.25 -17.82 -0.09 1.52 16 13 N -0.89 -24.70 11.28 55.43 0.63 -24.08 16 14 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 18 C -0.12 -2.67 4.92 -26.90 -0.13 -2.80 16 19 C -0.06 -1.17 6.09 37.21 0.23 -0.95 16 20 S -0.31 -5.86 21.10 -107.50 -2.27 -8.13 16 21 C 0.08 1.34 4.19 -3.90 -0.02 1.33 16 22 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 23 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.52 6.69 -51.93 -0.35 1.17 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.55 5.14 -51.93 -0.27 1.28 16 31 H 0.07 1.60 6.10 -51.93 -0.32 1.29 16 32 H 0.05 1.13 8.06 -51.93 -0.42 0.71 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.04 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.11 2.71 5.80 -51.93 -0.30 2.41 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.47 7.51 -51.93 -0.39 1.08 16 38 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -26.98 297.60 -10.03 -37.02 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.52 Total: 1.75 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -0.32 Total: -18.22 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.39 Total: -32.93 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -2.27 Total: -8.13 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.98 -10.03 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.686 kcal (2) G-P(sol) polarization free energy of solvation -26.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds