Wall clock time and date at job start Mon Mar 30 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46853 * 110.99643 * 2 1 4 4 C 1.53046 * 109.53381 * 174.08981 * 3 2 1 5 5 C 1.53136 * 109.24820 * 59.27640 * 4 3 2 6 6 C 1.53008 * 109.18030 * 302.48723 * 5 4 3 7 7 C 1.52978 * 109.62639 * 296.96630 * 6 5 4 8 8 C 1.52608 * 109.95824 * 303.14155 * 7 6 5 9 9 H 1.08997 * 109.22661 * 49.79929 * 8 7 6 10 10 C 1.50698 * 109.18725 * 169.17990 * 8 7 6 11 11 H 1.08000 * 120.00026 * 1.21792 * 10 8 7 12 12 C 1.37879 * 120.00071 * 181.22600 * 10 8 7 13 13 N 1.31519 * 119.99807 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00206 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47012 * 89.99633 * 14 12 10 16 16 H 1.48499 * 109.46863 * 209.99902 * 14 12 10 17 17 H 1.48502 * 109.46880 * 329.99635 * 14 12 10 18 18 C 1.52578 * 110.73267 * 289.47866 * 8 7 6 19 19 C 1.53098 * 109.99692 * 70.68414 * 18 8 7 20 20 S 1.81657 * 109.42746 * 177.47178 * 6 5 4 21 21 C 1.46867 * 111.00620 * 235.79286 * 2 1 3 22 22 H 1.09010 * 109.47118 * 56.04927 * 1 2 3 23 23 H 1.08998 * 109.46967 * 176.04206 * 1 2 3 24 24 H 1.08994 * 109.47802 * 296.04787 * 1 2 3 25 25 H 1.09001 * 109.46174 * 54.07683 * 3 2 1 26 26 H 1.08997 * 109.46175 * 294.10685 * 3 2 1 27 27 H 1.08994 * 109.51291 * 179.20995 * 4 3 2 28 28 H 1.09000 * 109.50868 * 299.34732 * 4 3 2 29 29 H 1.08999 * 109.51982 * 62.39666 * 5 4 3 30 30 H 1.08998 * 109.52251 * 182.57634 * 5 4 3 31 31 H 1.08993 * 109.39283 * 63.29191 * 7 6 5 32 32 H 1.09004 * 109.38642 * 182.99885 * 7 6 5 33 33 H 0.96997 * 120.00094 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.38085 * 310.51546 * 18 8 7 35 35 H 1.09005 * 109.29260 * 190.79184 * 18 8 7 36 36 H 1.08999 * 109.57986 * 177.15385 * 19 18 8 37 37 H 1.08991 * 109.69512 * 56.81052 * 19 18 8 38 38 H 1.09006 * 109.45121 * 305.65963 * 21 2 1 39 39 H 1.09001 * 109.45440 * 65.60029 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3347 0.1485 5 6 4.1197 0.5389 -1.0133 6 6 3.5173 -0.8675 -1.0245 7 6 3.8967 -1.5993 0.2641 8 6 5.4150 -1.6376 0.4137 9 1 5.8152 -0.6340 0.2700 10 6 5.7642 -2.1174 1.7989 11 1 4.9799 -2.3870 2.4908 12 6 7.0850 -2.2122 2.1831 13 7 8.0401 -1.8843 1.3405 14 14 7.5180 -2.8063 3.9004 15 1 7.6737 -4.2831 3.8886 16 1 8.7911 -2.1777 4.3353 17 1 6.4332 -2.4304 4.8423 18 6 6.0356 -2.5779 -0.6151 19 6 5.9278 -1.9671 -2.0148 20 16 4.1703 -1.7932 -2.4446 21 6 1.9954 -0.7708 -1.1339 22 1 -0.3634 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 -0.3634 0.4512 0.9232 25 1 1.5623 1.9261 0.8323 26 1 1.7334 1.8605 -0.9381 27 1 3.9095 2.3518 0.1344 28 1 3.7804 0.8561 1.0920 29 1 3.8924 1.0400 -1.9542 30 1 5.2002 0.4713 -0.8874 31 1 3.4620 -1.0787 1.1174 32 1 3.5109 -2.6182 0.2287 33 1 8.9693 -1.9513 1.6105 34 1 5.5104 -3.5329 -0.5955 35 1 7.0856 -2.7376 -0.3698 36 1 6.4175 -2.6203 -2.7371 37 1 6.4052 -0.9874 -2.0258 38 1 1.5662 -1.7727 -1.1223 39 1 1.7292 -0.2728 -2.0662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:07 Heat of formation + Delta-G solvation = -25.460976 kcal Electronic energy + Delta-G solvation = -18287.558523 eV Core-core repulsion = 15740.729784 eV Total energy + Delta-G solvation = -2546.828739 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58360 -37.59432 -34.73773 -33.45598 -32.35884 -30.08975 -27.68628 -26.94257 -24.68301 -23.93101 -23.42326 -21.35142 -19.49618 -18.43335 -17.82079 -16.64833 -16.49490 -15.97984 -15.53820 -15.37750 -14.98640 -14.70810 -14.68950 -14.03126 -13.77580 -13.51366 -13.44519 -13.15365 -13.13552 -12.83468 -12.69993 -12.38584 -12.26917 -12.14736 -11.77721 -11.63317 -11.47772 -11.21308 -11.03706 -10.73928 -10.42791 -10.19739 -9.19495 -8.57982 -8.05583 -6.20290 0.92247 1.40390 1.42243 1.51487 1.66524 2.43927 3.09971 3.18712 3.65084 3.83678 4.06051 4.16913 4.20510 4.26019 4.35657 4.50275 4.53235 4.60599 4.63735 4.70300 4.76671 4.80009 4.88711 4.96002 5.04069 5.05959 5.08065 5.15936 5.29082 5.36364 5.44660 5.57578 5.64826 6.01375 6.09433 6.13741 6.21237 6.41459 6.90347 7.47061 8.95820 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.007927 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.522480 B = 3531.589201 C = 4200.525556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.554 5.554 3 C 0.062 3.938 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.002 4.002 7 C -0.074 4.074 8 C 0.042 3.958 9 H 0.012 0.988 10 C -0.526 4.526 11 H 0.047 0.953 12 C 0.016 3.984 13 N -0.914 5.914 14 Si 0.947 3.053 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.108 4.108 19 C -0.057 4.057 20 S -0.296 6.296 21 C 0.093 3.907 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.349 5.551 -4.998 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.279 5.279 3 C -0.065 4.065 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.112 4.112 7 C -0.113 4.113 8 C 0.024 3.976 9 H 0.030 0.970 10 C -0.564 4.564 11 H 0.065 0.935 12 C -0.182 4.182 13 N -0.554 5.554 14 Si 0.773 3.227 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.147 4.147 19 C -0.205 4.205 20 S -0.067 6.067 21 C -0.036 4.036 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.540 4.932 -5.532 13.715 hybrid contribution 1.193 0.203 1.192 1.699 sum -10.347 5.135 -4.340 12.339 Atomic orbital electron populations 1.22385 0.85406 1.02428 1.01675 1.61819 1.08953 1.14284 1.42836 1.22104 0.94564 0.88608 1.01243 1.21618 0.95330 1.00152 0.98219 1.21838 0.99867 0.93355 0.99340 1.22646 0.97503 0.96617 0.94431 1.21504 0.96962 0.97801 0.95019 1.18625 0.90950 0.94637 0.93395 0.97018 1.21530 0.91886 1.43913 0.99114 0.93504 1.25629 0.96546 0.95619 1.00403 1.69965 0.99824 1.49436 1.36142 0.85727 0.77551 0.78397 0.81027 1.20393 1.20906 1.19531 1.21653 1.03437 0.97915 0.91728 1.23371 0.92375 1.03670 1.01114 1.86014 1.11796 1.75849 1.33046 1.21677 0.91138 0.98799 0.92003 0.94762 0.91203 0.90127 0.89206 0.93963 0.89924 0.92609 0.90992 0.92998 0.91495 0.94348 0.93055 0.94831 0.90595 0.88250 0.91261 0.90637 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.62 127.69 1.23 1.81 16 2 N -0.55 -14.95 4.18 -922.82 -3.86 -18.81 16 3 C 0.06 1.53 5.46 86.33 0.47 2.00 16 4 C -0.11 -3.37 5.75 30.66 0.18 -3.20 16 5 C -0.10 -3.50 4.36 30.64 0.13 -3.37 16 6 C 0.00 -0.07 0.60 -10.84 -0.01 -0.08 16 7 C -0.07 -3.12 3.38 30.46 0.10 -3.02 16 8 C 0.04 2.07 1.69 -11.81 -0.02 2.05 16 9 H 0.01 0.63 5.79 -2.39 -0.01 0.62 16 10 C -0.53 -28.89 8.50 25.60 0.22 -28.68 16 11 H 0.05 2.58 7.73 -2.91 -0.02 2.56 16 12 C 0.02 0.90 5.25 84.65 0.44 1.35 16 13 N -0.91 -51.73 11.28 21.45 0.24 -51.49 16 14 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 C -0.11 -5.12 4.92 30.49 0.15 -4.97 16 19 C -0.06 -2.27 6.09 72.01 0.44 -1.83 16 20 S -0.30 -10.72 21.10 -56.49 -1.19 -11.91 16 21 C 0.09 2.76 4.19 86.27 0.36 3.12 16 22 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 23 H 0.07 1.36 8.03 -2.39 -0.02 1.34 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.90 8.12 -2.39 -0.02 1.88 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.99 6.69 -2.39 -0.02 1.97 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.03 5.14 -2.39 -0.01 2.02 16 31 H 0.07 2.92 6.10 -2.39 -0.01 2.90 16 32 H 0.04 1.69 8.06 -2.38 -0.02 1.67 16 33 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.03 1.60 8.06 -2.39 -0.02 1.58 16 35 H 0.08 4.06 5.80 -2.38 -0.01 4.05 16 36 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.07 2.80 7.51 -2.39 -0.02 2.79 16 38 H 0.08 2.27 8.04 -2.38 -0.02 2.26 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -57.97 297.60 1.92 -56.04 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.01 Total: 15.33 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.70 Total: -34.81 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -3.62 Total: -70.29 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.19 Total: -11.91 kcal Total: -57.97 1.92 -56.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.584 kcal (2) G-P(sol) polarization free energy of solvation -57.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds