Wall clock time and date at job start Mon Mar 30 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.04281 * 60.72543 * 9 7 2 11 11 C 1.54509 * 109.05370 * 301.80795 * 9 7 2 12 12 C 1.50462 * 108.85092 * 162.26868 * 11 9 7 13 13 C 1.54297 * 113.03708 * 92.15458 * 12 11 9 14 14 C 1.54073 * 112.28383 * 318.30093 * 13 12 11 15 15 N 1.44268 * 111.97937 * 318.91238 * 14 13 12 16 16 C 1.46895 * 111.00400 * 219.31286 * 15 14 13 17 17 H 1.09006 * 108.82741 * 297.32248 * 16 15 14 18 18 C 1.52338 * 108.86901 * 55.84650 * 16 15 14 19 19 C 1.54251 * 112.58875 * 120.81992 * 18 16 15 20 20 S 1.83957 * 102.58092 * 24.53346 * 19 18 16 21 21 C 1.54261 * 108.87366 * 178.78856 * 16 15 14 22 22 C 1.45860 * 109.05699 * 179.72111 * 9 7 2 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.56746 * 282.07718 * 11 9 7 25 25 H 1.08995 * 109.57907 * 42.45220 * 11 9 7 26 26 H 1.08993 * 108.76878 * 331.23329 * 12 11 9 27 27 H 1.09001 * 108.67786 * 213.00310 * 12 11 9 28 28 H 1.08998 * 108.91788 * 197.57806 * 13 12 11 29 29 H 1.08998 * 108.84473 * 78.97019 * 13 12 11 30 30 H 1.09001 * 108.97811 * 198.27558 * 14 13 12 31 31 H 1.08993 * 108.97945 * 79.55696 * 14 13 12 32 32 H 1.08994 * 108.86973 * 241.64508 * 18 16 15 33 33 H 1.09003 * 108.86551 * 0.14833 * 18 16 15 34 34 H 1.09002 * 110.78795 * 142.80687 * 19 18 16 35 35 H 1.09005 * 110.79176 * 266.25896 * 19 18 16 36 36 H 1.08998 * 110.78486 * 332.92303 * 21 16 15 37 37 H 1.09001 * 110.78251 * 96.38046 * 21 16 15 38 38 H 1.09007 * 108.78950 * 302.75463 * 22 9 7 39 39 H 1.09001 * 108.79337 * 60.98009 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6406 -2.5534 -0.9069 11 6 0.3268 -2.5536 1.2317 12 6 -0.7195 -3.6121 1.0107 13 6 -0.3082 -4.9925 1.5640 14 6 1.1679 -5.3230 1.2714 15 7 1.5561 -4.9272 -0.0605 16 6 2.4443 -5.9265 -0.6689 17 1 3.3588 -5.9900 -0.0790 18 6 1.7491 -7.2818 -0.6472 19 6 1.5700 -7.8785 -2.0584 20 16 2.9135 -7.0609 -3.0126 21 6 2.8034 -5.4707 -2.0983 22 6 2.2067 -3.6010 -0.0102 23 1 -0.4850 0.8401 -0.0004 24 1 0.9146 -2.8001 2.1160 25 1 -0.1559 -1.5862 1.3698 26 1 -0.9047 -3.7041 -0.0594 27 1 -1.6418 -3.2988 1.5000 28 1 -0.9384 -5.7572 1.1100 29 1 -0.4650 -5.0003 2.6427 30 1 1.3190 -6.3970 1.3801 31 1 1.7975 -4.8030 1.9934 32 1 2.3404 -7.9717 -0.0452 33 1 0.7672 -7.1670 -0.1881 34 1 1.7098 -8.9594 -2.0419 35 1 0.5930 -7.6199 -2.4667 36 1 2.0167 -4.8398 -2.5121 37 1 3.7624 -4.9528 -2.1096 38 1 2.8586 -3.4965 -0.8776 39 1 2.8149 -3.5423 0.8925 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:29 Heat of formation + Delta-G solvation = -13.645486 kcal Electronic energy + Delta-G solvation = -18058.038194 eV Core-core repulsion = 15511.721813 eV Total energy + Delta-G solvation = -2546.316381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62571 -37.25557 -34.96053 -33.57678 -32.54074 -30.31085 -27.75062 -26.89670 -24.92069 -24.73075 -21.46157 -20.92427 -20.03006 -18.52123 -17.87802 -17.06516 -16.65550 -16.09787 -15.94445 -15.29115 -14.92311 -14.79050 -14.49651 -14.06276 -13.98528 -13.38970 -13.04420 -12.93535 -12.82479 -12.68613 -12.61537 -12.44444 -12.22587 -12.13783 -11.92537 -11.50996 -11.34763 -11.19270 -10.92026 -10.79155 -10.51587 -10.30298 -9.14150 -8.75100 -8.05227 -6.20899 0.91753 1.33676 1.40466 1.41696 1.50902 2.42485 3.04094 3.20315 3.52126 3.92151 3.97236 4.05028 4.20344 4.26858 4.28783 4.38689 4.55412 4.59177 4.64159 4.71570 4.76560 4.84654 4.88453 4.96538 5.04823 5.09991 5.13100 5.20650 5.30835 5.53701 5.59430 5.71158 5.80675 5.96967 6.17646 6.33170 6.38829 6.51748 6.93722 7.47307 8.97361 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.006396 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.155545 B = 4376.617286 C = 5140.765855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.055 3.945 10 H -0.007 1.007 11 C -0.100 4.100 12 C -0.095 4.095 13 C -0.099 4.099 14 C 0.053 3.947 15 N -0.530 5.530 16 C 0.084 3.916 17 H 0.050 0.950 18 C -0.119 4.119 19 C -0.046 4.046 20 S -0.339 6.339 21 C -0.048 4.048 22 C 0.087 3.913 23 H 0.259 0.741 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -15.367 1.111 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.036 3.964 10 H 0.011 0.989 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.137 4.137 14 C -0.076 4.076 15 N -0.255 5.255 16 C -0.026 4.026 17 H 0.068 0.932 18 C -0.158 4.158 19 C -0.193 4.193 20 S -0.114 6.114 21 C -0.197 4.197 22 C -0.040 4.040 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.196 -15.620 -0.114 15.774 hybrid contribution 0.331 1.935 1.160 2.281 sum 2.528 -13.685 1.046 13.956 Atomic orbital electron populations 1.70042 1.07064 1.26838 1.50976 1.25655 0.95585 1.02079 0.94967 0.85704 0.78824 0.79886 0.78113 1.20370 1.20916 1.19386 1.21605 0.92818 0.92388 1.50689 0.93314 1.17534 0.93574 0.91465 0.93817 0.98933 1.21187 0.97024 0.98597 0.97006 1.21082 0.97448 0.95103 0.99635 1.21904 0.95615 0.96140 1.00012 1.22000 0.96565 1.00588 0.88424 1.61889 1.40375 1.01688 1.21511 1.22295 0.94745 0.92028 0.93492 0.93161 1.22120 1.03009 0.93875 0.96821 1.24185 0.97529 1.03184 0.94427 1.87917 1.51716 1.16735 1.54985 1.24145 1.04730 0.95398 0.95416 1.20954 0.95800 0.88575 0.98696 0.93183 0.95809 0.92368 0.94555 0.94711 0.91176 0.91567 0.89143 0.95531 0.88712 0.88706 0.85470 0.89001 0.89934 0.88392 0.93074 0.96398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.76 11.18 21.45 0.24 -52.52 16 2 C 0.02 0.89 5.21 84.66 0.44 1.33 16 3 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.52 8.50 25.60 0.22 -29.30 16 8 H 0.05 2.64 7.72 -2.91 -0.02 2.61 16 9 C 0.05 2.74 1.87 -13.21 -0.02 2.71 16 10 H -0.01 -0.42 7.58 -2.38 -0.02 -0.44 16 11 C -0.10 -4.75 4.77 30.29 0.14 -4.61 16 12 C -0.09 -3.77 5.42 30.21 0.16 -3.61 16 13 C -0.10 -2.93 6.15 31.40 0.19 -2.73 16 14 C 0.05 1.52 4.43 87.16 0.39 1.91 16 15 N -0.53 -17.30 3.97 -885.25 -3.52 -20.81 16 16 C 0.08 2.25 2.38 45.12 0.11 2.36 16 17 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 18 C -0.12 -2.37 4.91 30.80 0.15 -2.22 16 19 C -0.05 -0.87 7.46 72.41 0.54 -0.33 16 20 S -0.34 -8.88 23.26 -56.49 -1.31 -10.19 16 21 C -0.05 -1.41 5.45 72.41 0.39 -1.01 16 22 C 0.09 3.54 3.86 83.94 0.32 3.87 16 23 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 24 H 0.02 1.07 7.15 -2.39 -0.02 1.06 16 25 H 0.06 3.20 5.64 -2.39 -0.01 3.19 16 26 H 0.04 1.58 7.38 -2.39 -0.02 1.56 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.99 5.81 -2.39 -0.01 1.98 16 31 H 0.03 0.84 6.51 -2.39 -0.02 0.83 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.87 6.41 -2.39 -0.02 1.85 16 34 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 2.78 8.01 -2.39 -0.02 2.76 16 37 H 0.10 2.84 7.81 -2.39 -0.02 2.82 16 38 H 0.05 2.09 6.14 -2.38 -0.01 2.07 16 39 H 0.02 0.75 7.24 -2.39 -0.02 0.73 16 Total: -1.00 -60.51 298.40 1.48 -59.03 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.01 Total: 10.35 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.04 Total: -31.64 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -3.28 Total: -73.34 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.31 Total: -10.19 kcal Total: -60.51 1.48 -59.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.380 kcal (2) G-P(sol) polarization free energy of solvation -60.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds