Wall clock time and date at job start Mon Mar 30 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47301 * 264.83017 * 3 2 1 5 5 H 1.48497 * 109.46851 * 24.83021 * 3 2 1 6 6 H 1.48501 * 109.46924 * 144.83070 * 3 2 1 7 7 C 1.37872 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00031 * 4.43586 * 7 2 1 9 9 C 1.50703 * 120.00412 * 184.43118 * 7 2 1 10 10 H 1.09004 * 109.54115 * 335.75881 * 9 7 2 11 11 C 1.50755 * 109.53950 * 96.02596 * 9 7 2 12 12 C 1.54171 * 112.60836 * 212.87656 * 11 9 7 13 13 C 1.53819 * 111.97632 * 318.48802 * 12 11 9 14 14 C 1.50819 * 111.61895 * 319.04324 * 13 12 11 15 15 N 1.47626 * 108.04146 * 95.05662 * 14 13 12 16 16 C 1.46904 * 111.00020 * 150.32973 * 15 14 13 17 17 H 1.08993 * 108.84627 * 186.74841 * 16 15 14 18 18 C 1.52942 * 108.88627 * 68.16900 * 16 15 14 19 19 C 1.54991 * 109.04283 * 208.99129 * 18 16 15 20 20 S 1.83993 * 100.82044 * 41.61427 * 19 18 16 21 21 C 1.53703 * 108.88395 * 305.32519 * 16 15 14 22 22 C 1.39781 * 114.76646 * 277.18828 * 15 14 13 23 23 H 0.97002 * 120.00159 * 359.97438 * 1 2 3 24 24 H 1.08992 * 108.85842 * 333.68572 * 11 9 7 25 25 H 1.09003 * 108.84864 * 92.07639 * 11 9 7 26 26 H 1.08999 * 108.98131 * 197.84621 * 12 11 9 27 27 H 1.08994 * 108.98002 * 79.12996 * 12 11 9 28 28 H 1.08997 * 109.05502 * 198.49017 * 13 12 11 29 29 H 1.09000 * 109.04735 * 79.59011 * 13 12 11 30 30 H 1.08994 * 109.74880 * 214.69584 * 14 13 12 31 31 H 1.09006 * 109.74530 * 335.36997 * 14 13 12 32 32 H 1.08999 * 109.60655 * 329.04043 * 18 16 15 33 33 H 1.09002 * 109.59715 * 89.17795 * 18 16 15 34 34 H 1.08992 * 111.23769 * 283.70586 * 19 18 16 35 35 H 1.09000 * 111.14998 * 159.48079 * 19 18 16 36 36 H 1.09004 * 110.33834 * 242.48774 * 21 16 15 37 37 H 1.08995 * 110.34726 * 4.74344 * 21 16 15 38 38 H 1.08997 * 109.02074 * 182.86891 * 22 15 14 39 39 H 1.09003 * 109.02248 * 301.76393 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6059 1.9834 -1.3943 5 1 1.3961 2.6817 0.5879 6 1 3.4878 1.4742 0.8064 7 6 2.0045 -1.1940 -0.0005 8 1 1.4669 -2.1279 -0.0733 9 6 3.5081 -1.1960 0.1003 10 1 3.8990 -0.2441 -0.2592 11 6 3.9169 -1.4010 1.5368 12 6 5.2217 -0.6611 1.8931 13 6 6.2721 -0.7758 0.7753 14 6 6.3056 -2.1630 0.1845 15 7 5.4441 -2.1703 -1.0144 16 6 5.9232 -3.1476 -2.0010 17 1 5.3392 -3.0404 -2.9150 18 6 5.7157 -4.5565 -1.4432 19 6 6.7947 -5.4987 -2.0351 20 16 8.2818 -4.4189 -1.9474 21 6 7.3987 -2.8543 -2.3158 22 6 4.0818 -2.3464 -0.7555 23 1 -0.4850 0.8400 0.0004 24 1 3.1187 -1.0397 2.1852 25 1 4.0569 -2.4673 1.7145 26 1 5.6313 -1.0860 2.8095 27 1 4.9972 0.3921 2.0619 28 1 7.2543 -0.5395 1.1845 29 1 6.0341 -0.0597 -0.0113 30 1 7.3274 -2.4199 -0.0946 31 1 5.9309 -2.8825 0.9126 32 1 5.8026 -4.5362 -0.3568 33 1 4.7257 -4.9177 -1.7215 34 1 6.5631 -5.7656 -3.0661 35 1 6.9192 -6.3896 -1.4196 36 1 7.5168 -2.5911 -3.3670 37 1 7.7696 -2.0509 -1.6793 38 1 3.5429 -2.3880 -1.7020 39 1 3.9399 -3.2877 -0.2245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259666769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:31 Heat of formation + Delta-G solvation = 0.469514 kcal Electronic energy + Delta-G solvation = -18176.092565 eV Core-core repulsion = 15630.388256 eV Total energy + Delta-G solvation = -2545.704309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68599 -35.95488 -33.04487 -32.31587 -31.15068 -29.24744 -26.70963 -24.51989 -24.35034 -23.18178 -20.78442 -19.19698 -18.49346 -17.10282 -16.73707 -16.10012 -15.15695 -14.63299 -14.38550 -14.09417 -13.92458 -13.60639 -13.22352 -12.70888 -12.58918 -12.29398 -11.98967 -11.71032 -11.62507 -11.43757 -11.29803 -10.93804 -10.78440 -10.47275 -10.37842 -10.28689 -9.93936 -9.71848 -9.50801 -9.18679 -8.92474 -8.49942 -7.78461 -7.74279 -6.06408 -4.05656 1.80433 2.25542 3.32543 3.40360 3.43844 4.26139 4.45276 4.52899 4.73593 4.98781 5.06723 5.08098 5.24028 5.34673 5.42543 5.49550 5.57537 5.66531 5.71651 5.86952 5.92109 5.98856 6.05169 6.15118 6.16697 6.36451 6.42307 6.51699 6.64064 6.74278 6.87740 7.09666 7.31967 7.55393 7.58348 7.75188 8.00710 8.55034 8.98310 9.57561 11.06830 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.006411 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.284161 B = 4366.179610 C = 4677.651090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.070 0.930 9 C 0.023 3.977 10 H 0.044 0.956 11 C -0.111 4.111 12 C -0.122 4.122 13 C -0.115 4.115 14 C 0.059 3.941 15 N -0.540 5.540 16 C 0.081 3.919 17 H 0.090 0.910 18 C -0.157 4.157 19 C -0.061 4.061 20 S -0.314 6.314 21 C -0.061 4.061 22 C 0.080 3.920 23 H 0.263 0.737 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.320 -6.560 -2.518 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.549 4.549 8 H 0.088 0.912 9 C 0.004 3.996 10 H 0.062 0.938 11 C -0.149 4.149 12 C -0.159 4.159 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.264 5.264 16 C -0.029 4.029 17 H 0.108 0.892 18 C -0.197 4.197 19 C -0.209 4.209 20 S -0.089 6.089 21 C -0.209 4.209 22 C -0.049 4.049 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 15.334 -6.226 -2.468 16.733 hybrid contribution -1.014 0.346 0.132 1.080 sum 14.320 -5.881 -2.336 15.656 Atomic orbital electron populations 1.69907 1.06369 1.26936 1.50921 1.25020 0.94626 0.98957 0.94325 0.86874 0.80355 0.83529 0.78899 1.20241 1.21970 1.18397 1.20941 0.89039 0.94396 1.50495 0.91231 1.18997 0.95813 0.94447 0.90392 0.93802 1.21806 0.94700 0.98000 1.00370 1.22026 0.96352 1.00644 0.96902 1.21363 0.97823 0.97406 0.98681 1.21886 0.96640 0.97405 0.90829 1.59400 1.04753 1.49030 1.13173 1.22212 0.94026 0.89335 0.97306 0.89237 1.23095 0.99310 0.94925 1.02408 1.24225 0.93044 0.99362 1.04311 1.87755 1.19260 1.07480 1.94415 1.24207 0.95369 0.96214 1.05082 1.21216 0.85010 0.98147 1.00477 0.92733 0.92211 0.94470 0.93750 0.92857 0.93028 0.90879 0.90799 0.94055 0.90108 0.89811 0.89206 0.88007 0.89049 0.86921 0.91461 0.97157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.46 26.98 -169.99 -4.59 16.87 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.04 6.23 56.52 0.35 -5.69 16 7 C -0.51 -13.91 8.53 -34.44 -0.29 -14.20 16 8 H 0.07 2.07 8.06 -52.48 -0.42 1.64 16 9 C 0.02 0.52 1.49 -92.15 -0.14 0.38 16 10 H 0.04 1.03 4.25 -51.93 -0.22 0.81 16 11 C -0.11 -2.28 4.86 -27.24 -0.13 -2.41 16 12 C -0.12 -2.13 5.91 -25.69 -0.15 -2.29 16 13 C -0.11 -1.81 5.41 -27.40 -0.15 -1.96 16 14 C 0.06 0.89 3.94 -4.52 -0.02 0.87 16 15 N -0.54 -8.70 3.91 -231.59 -0.91 -9.60 16 16 C 0.08 1.07 2.69 -67.38 -0.18 0.89 16 17 H 0.09 1.19 7.98 -51.93 -0.41 0.77 16 18 C -0.16 -1.90 4.46 -25.71 -0.11 -2.01 16 19 C -0.06 -0.63 7.52 38.21 0.29 -0.34 16 20 S -0.31 -3.83 23.07 -107.50 -2.48 -6.31 16 21 C -0.06 -0.72 6.25 37.52 0.23 -0.49 16 22 C 0.08 1.54 3.91 -6.75 -0.03 1.51 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.06 1.35 7.71 -51.93 -0.40 0.95 16 25 H 0.04 0.73 6.58 -51.93 -0.34 0.39 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.98 7.55 -51.93 -0.39 0.59 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.27 7.27 -51.93 -0.38 0.89 16 30 H 0.07 1.01 5.42 -51.93 -0.28 0.72 16 31 H 0.04 0.65 6.03 -51.93 -0.31 0.34 16 32 H 0.08 1.08 6.37 -51.93 -0.33 0.75 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.11 1.40 6.05 -51.93 -0.31 1.08 16 38 H 0.07 1.36 7.76 -51.93 -0.40 0.96 16 39 H 0.01 0.20 6.50 -51.93 -0.34 -0.14 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -28.77 293.49 -9.83 -38.60 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.27 Total: 0.71 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.78 Total: -18.11 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.13 Total: -36.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.59 Total: 16.87 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.48 Total: -6.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.77 -9.83 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.068 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds