Wall clock time and date at job start Mon Mar 30 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47301 * 264.83017 * 3 2 1 5 5 H 1.48497 * 109.46851 * 24.83021 * 3 2 1 6 6 H 1.48501 * 109.46924 * 144.83070 * 3 2 1 7 7 C 1.37872 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00031 * 4.43586 * 7 2 1 9 9 C 1.50703 * 120.00412 * 184.43118 * 7 2 1 10 10 H 1.09004 * 109.54115 * 335.75881 * 9 7 2 11 11 C 1.50755 * 109.53950 * 96.02596 * 9 7 2 12 12 C 1.54171 * 112.60836 * 212.87656 * 11 9 7 13 13 C 1.53819 * 111.97632 * 318.48802 * 12 11 9 14 14 C 1.50819 * 111.61895 * 319.04324 * 13 12 11 15 15 N 1.47626 * 108.04146 * 95.05662 * 14 13 12 16 16 C 1.46904 * 111.00020 * 150.32973 * 15 14 13 17 17 H 1.08993 * 108.84627 * 186.74841 * 16 15 14 18 18 C 1.52942 * 108.88627 * 68.16900 * 16 15 14 19 19 C 1.54991 * 109.04283 * 208.99129 * 18 16 15 20 20 S 1.83993 * 100.82044 * 41.61427 * 19 18 16 21 21 C 1.53703 * 108.88395 * 305.32519 * 16 15 14 22 22 C 1.39781 * 114.76646 * 277.18828 * 15 14 13 23 23 H 0.97002 * 120.00159 * 359.97438 * 1 2 3 24 24 H 1.08992 * 108.85842 * 333.68572 * 11 9 7 25 25 H 1.09003 * 108.84864 * 92.07639 * 11 9 7 26 26 H 1.08999 * 108.98131 * 197.84621 * 12 11 9 27 27 H 1.08994 * 108.98002 * 79.12996 * 12 11 9 28 28 H 1.08997 * 109.05502 * 198.49017 * 13 12 11 29 29 H 1.09000 * 109.04735 * 79.59011 * 13 12 11 30 30 H 1.08994 * 109.74880 * 214.69584 * 14 13 12 31 31 H 1.09006 * 109.74530 * 335.36997 * 14 13 12 32 32 H 1.08999 * 109.60655 * 329.04043 * 18 16 15 33 33 H 1.09002 * 109.59715 * 89.17795 * 18 16 15 34 34 H 1.08992 * 111.23769 * 283.70586 * 19 18 16 35 35 H 1.09000 * 111.14998 * 159.48079 * 19 18 16 36 36 H 1.09004 * 110.33834 * 242.48774 * 21 16 15 37 37 H 1.08995 * 110.34726 * 4.74344 * 21 16 15 38 38 H 1.08997 * 109.02074 * 182.86891 * 22 15 14 39 39 H 1.09003 * 109.02248 * 301.76393 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6059 1.9834 -1.3943 5 1 1.3961 2.6817 0.5879 6 1 3.4878 1.4742 0.8064 7 6 2.0045 -1.1940 -0.0005 8 1 1.4669 -2.1279 -0.0733 9 6 3.5081 -1.1960 0.1003 10 1 3.8990 -0.2441 -0.2592 11 6 3.9169 -1.4010 1.5368 12 6 5.2217 -0.6611 1.8931 13 6 6.2721 -0.7758 0.7753 14 6 6.3056 -2.1630 0.1845 15 7 5.4441 -2.1703 -1.0144 16 6 5.9232 -3.1476 -2.0010 17 1 5.3392 -3.0404 -2.9150 18 6 5.7157 -4.5565 -1.4432 19 6 6.7947 -5.4987 -2.0351 20 16 8.2818 -4.4189 -1.9474 21 6 7.3987 -2.8543 -2.3158 22 6 4.0818 -2.3464 -0.7555 23 1 -0.4850 0.8400 0.0004 24 1 3.1187 -1.0397 2.1852 25 1 4.0569 -2.4673 1.7145 26 1 5.6313 -1.0860 2.8095 27 1 4.9972 0.3921 2.0619 28 1 7.2543 -0.5395 1.1845 29 1 6.0341 -0.0597 -0.0113 30 1 7.3274 -2.4199 -0.0946 31 1 5.9309 -2.8825 0.9126 32 1 5.8026 -4.5362 -0.3568 33 1 4.7257 -4.9177 -1.7215 34 1 6.5631 -5.7656 -3.0661 35 1 6.9192 -6.3896 -1.4196 36 1 7.5168 -2.5911 -3.3670 37 1 7.7696 -2.0509 -1.6793 38 1 3.5429 -2.3880 -1.7020 39 1 3.9399 -3.2877 -0.2245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:30 Heat of formation + Delta-G solvation = -16.468976 kcal Electronic energy + Delta-G solvation = -18176.827073 eV Core-core repulsion = 15630.388256 eV Total energy + Delta-G solvation = -2546.438817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00081 -37.32674 -34.89522 -33.55230 -32.89995 -30.29494 -28.31411 -25.94028 -25.78175 -24.49312 -22.16878 -20.58673 -19.99854 -18.97202 -17.76563 -17.39708 -16.60123 -16.03355 -15.87278 -15.48124 -15.20990 -14.88360 -14.60296 -14.55040 -13.77341 -13.59620 -13.12902 -13.09033 -13.04984 -12.76457 -12.69468 -12.60309 -12.10320 -12.02836 -11.84411 -11.59652 -11.55339 -11.12244 -10.98372 -10.87592 -10.78373 -10.59676 -9.05725 -8.70988 -8.27074 -6.29738 0.90591 1.35036 1.36977 1.37809 1.49515 2.37732 3.02134 3.12524 3.54305 3.74782 4.00165 4.05086 4.09230 4.12696 4.21298 4.31006 4.39247 4.53425 4.54725 4.63841 4.69168 4.73886 4.84118 4.87203 4.94988 5.01640 5.04259 5.11128 5.16512 5.28055 5.36575 5.51829 5.62333 5.74692 5.86301 6.25656 6.34137 6.57050 6.79839 7.36580 8.89848 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.006411 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.284161 B = 4366.179610 C = 4677.651090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.239 1.239 7 C -0.511 4.511 8 H 0.028 0.972 9 C 0.023 3.977 10 H 0.039 0.961 11 C -0.107 4.107 12 C -0.118 4.118 13 C -0.113 4.113 14 C 0.064 3.936 15 N -0.548 5.548 16 C 0.081 3.919 17 H 0.088 0.912 18 C -0.153 4.153 19 C -0.049 4.049 20 S -0.333 6.333 21 C -0.052 4.052 22 C 0.100 3.900 23 H 0.264 0.736 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.318 -6.539 -2.662 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.162 1.162 7 C -0.549 4.549 8 H 0.047 0.953 9 C 0.003 3.997 10 H 0.058 0.942 11 C -0.145 4.145 12 C -0.155 4.155 13 C -0.151 4.151 14 C -0.062 4.062 15 N -0.271 5.271 16 C -0.028 4.028 17 H 0.106 0.894 18 C -0.194 4.194 19 C -0.197 4.197 20 S -0.108 6.108 21 C -0.200 4.200 22 C -0.030 4.030 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 18.365 -6.224 -2.613 19.566 hybrid contribution -1.993 0.217 0.168 2.012 sum 16.372 -6.007 -2.445 17.610 Atomic orbital electron populations 1.70058 1.08260 1.27868 1.53186 1.25863 0.95322 1.02814 0.94306 0.85870 0.79665 0.78778 0.79422 1.19540 1.22063 1.16182 1.21259 0.91782 0.92721 1.49142 0.95329 1.18936 0.92630 0.95617 0.92473 0.94238 1.21640 0.95880 0.98840 0.98182 1.21982 0.95054 0.99718 0.98790 1.21377 0.98684 0.97339 0.97683 1.21894 0.97259 0.96942 0.90152 1.59267 1.03183 1.50476 1.14214 1.22278 0.94982 0.89263 0.96317 0.89379 1.23001 0.99943 0.94755 1.01701 1.24261 0.91062 0.98960 1.05419 1.87868 1.20332 1.08110 1.94504 1.24129 0.93919 0.96047 1.05919 1.20778 0.86918 0.96455 0.98816 0.92746 0.94988 0.93913 0.91308 0.93559 0.89909 0.92285 0.88801 0.94644 0.91190 0.90035 0.87672 0.86627 0.87713 0.86990 0.93129 0.97496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 13.96 21.44 0.30 -59.51 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.94 44.57 26.98 68.60 1.85 46.42 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.24 -10.41 6.23 99.48 0.62 -9.79 16 7 C -0.51 -28.77 8.53 25.60 0.22 -28.55 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.02 1.02 1.49 -11.78 -0.02 1.01 16 10 H 0.04 1.81 4.25 -2.39 -0.01 1.80 16 11 C -0.11 -4.35 4.86 30.26 0.15 -4.20 16 12 C -0.12 -3.83 5.91 31.27 0.18 -3.64 16 13 C -0.11 -3.19 5.41 30.16 0.16 -3.03 16 14 C 0.06 1.73 3.94 85.46 0.34 2.07 16 15 N -0.55 -16.67 3.91 -886.61 -3.47 -20.14 16 16 C 0.08 1.98 2.69 45.13 0.12 2.10 16 17 H 0.09 2.19 7.98 -2.39 -0.02 2.17 16 18 C -0.15 -3.41 4.46 31.26 0.14 -3.27 16 19 C -0.05 -0.88 7.52 72.66 0.55 -0.33 16 20 S -0.33 -7.17 23.07 -56.49 -1.30 -8.47 16 21 C -0.05 -1.09 6.25 72.22 0.45 -0.64 16 22 C 0.10 3.81 3.91 88.07 0.34 4.15 16 23 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 24 H 0.03 1.44 7.71 -2.39 -0.02 1.42 16 25 H 0.04 1.65 6.58 -2.39 -0.02 1.63 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.57 7.55 -2.39 -0.02 1.55 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.86 7.27 -2.39 -0.02 1.85 16 30 H 0.09 2.22 5.42 -2.39 -0.01 2.20 16 31 H 0.04 1.03 6.03 -2.38 -0.01 1.01 16 32 H 0.07 1.73 6.37 -2.39 -0.02 1.72 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.11 2.40 6.05 -2.39 -0.01 2.39 16 38 H 0.05 2.07 7.76 -2.39 -0.02 2.05 16 39 H 0.01 0.27 6.50 -2.39 -0.02 0.26 16 Total: -1.00 -63.54 293.49 1.41 -62.13 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.93 Total: 12.67 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 3.10 Total: -33.09 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -3.17 Total: -79.65 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.85 Total: 46.42 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.30 Total: -8.47 kcal Total: -63.54 1.41 -62.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.659 kcal (2) G-P(sol) polarization free energy of solvation -63.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds