Wall clock time and date at job start Mon Mar 30 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99670 * 2 1 4 4 H 1.48504 * 109.47357 * 269.99638 * 3 2 1 5 5 H 1.48500 * 109.47230 * 30.00025 * 3 2 1 6 6 H 1.48508 * 109.47170 * 150.00091 * 3 2 1 7 7 C 1.37875 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00140 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46772 * 179.97438 * 9 7 2 11 11 C 1.53123 * 109.52162 * 184.99799 * 10 9 7 12 12 C 1.53029 * 109.28222 * 182.37695 * 11 10 9 13 13 N 1.46848 * 109.52168 * 59.18035 * 12 11 10 14 14 C 1.46900 * 111.00348 * 174.16241 * 13 12 11 15 15 H 1.08997 * 109.60489 * 57.44350 * 14 13 12 16 16 C 1.53864 * 109.60604 * 297.28915 * 14 13 12 17 17 C 1.55142 * 106.89548 * 192.82166 * 16 14 13 18 18 S 1.83455 * 102.20434 * 42.11738 * 17 16 14 19 19 C 1.54270 * 109.61248 * 177.78691 * 14 13 12 20 20 C 1.46846 * 111.19899 * 298.25863 * 13 12 11 21 21 C 1.53040 * 109.52115 * 61.74357 * 20 13 12 22 22 H 0.97000 * 120.00103 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46785 * 59.99966 * 9 7 2 24 24 H 1.08995 * 109.47081 * 299.99969 * 9 7 2 25 25 H 1.08994 * 109.52597 * 305.12162 * 10 9 7 26 26 H 1.08999 * 109.50063 * 62.43756 * 11 10 9 27 27 H 1.08996 * 109.53361 * 302.34538 * 11 10 9 28 28 H 1.08999 * 109.46412 * 299.16784 * 12 11 10 29 29 H 1.08994 * 109.45831 * 179.19148 * 12 11 10 30 30 H 1.09000 * 109.97585 * 73.46418 * 16 14 13 31 31 H 1.09002 * 109.97025 * 312.17893 * 16 14 13 32 32 H 1.08993 * 110.85520 * 283.93635 * 17 16 14 33 33 H 1.09001 * 110.85029 * 160.29448 * 17 16 14 34 34 H 1.09001 * 110.40279 * 29.08011 * 19 14 13 35 35 H 1.08995 * 110.39971 * 266.66490 * 19 14 13 36 36 H 1.09002 * 109.46336 * 181.75788 * 20 13 12 37 37 H 1.08992 * 109.46369 * 301.72689 * 20 13 12 38 38 H 1.09001 * 109.49947 * 180.88368 * 21 20 13 39 39 H 1.08996 * 109.50509 * 60.76434 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5477 -2.6396 0.1262 12 6 6.0567 -4.0814 0.0659 13 7 5.6517 -4.6920 -1.2068 14 6 6.2398 -6.0294 -1.3599 15 1 5.9431 -6.6577 -0.5201 16 6 7.7739 -5.9174 -1.3994 17 6 8.3137 -7.2882 -1.8855 18 16 7.1461 -7.7077 -3.2369 19 6 5.7502 -6.6625 -2.6787 20 6 4.1893 -4.7430 -1.3296 21 6 3.6246 -3.3208 -1.3110 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6806 0.8906 24 1 3.8753 -0.6795 -0.8894 25 1 3.5856 -3.1770 0.8399 26 1 5.8349 -2.1918 1.0776 27 1 5.9823 -2.0656 -0.6921 28 1 5.6330 -4.6511 0.8930 29 1 7.1440 -4.0861 0.1412 30 1 8.1571 -5.6985 -0.4027 31 1 8.0720 -5.1322 -2.0942 32 1 8.2661 -8.0291 -1.0875 33 1 9.3302 -7.1918 -2.2669 34 1 5.5369 -5.8882 -3.4157 35 1 4.8652 -7.2735 -2.5012 36 1 3.9204 -5.2283 -2.2679 37 1 3.7744 -5.3095 -0.4961 38 1 2.5379 -3.3598 -1.3864 39 1 4.0284 -2.7578 -2.1524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259732455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:20 Heat of formation + Delta-G solvation = -16.180310 kcal Electronic energy + Delta-G solvation = -17347.909822 eV Core-core repulsion = 14801.483523 eV Total energy + Delta-G solvation = -2546.426299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36869 -36.21331 -33.36968 -31.94528 -30.81529 -29.31572 -27.84287 -24.82263 -23.66947 -22.22091 -21.00462 -20.11875 -19.07654 -17.04010 -16.71970 -16.31127 -15.24587 -14.50067 -14.37618 -14.30040 -13.74623 -13.54565 -13.33700 -12.96612 -12.80259 -12.46811 -12.16900 -11.88752 -11.83166 -11.63607 -11.41575 -11.14928 -10.88825 -10.76567 -10.58234 -10.15986 -10.15908 -9.78652 -9.60789 -9.27011 -9.00878 -8.52033 -8.28185 -7.87813 -6.02815 -3.99942 1.61693 2.15228 3.31706 3.39183 3.42818 3.82152 4.34497 4.46716 4.54151 4.70871 4.88732 4.94325 5.15995 5.27294 5.29257 5.31821 5.37122 5.44018 5.50041 5.58732 5.63983 5.75741 5.85527 5.86604 5.99219 6.11015 6.29269 6.42326 6.51921 6.80946 6.91310 7.00052 7.13647 7.21190 7.31747 7.48260 7.82215 8.55884 9.02080 9.60487 11.10596 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.047754 B = 0.004235 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.193630 B = 6610.578568 C = 6912.642225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.057 3.943 13 N -0.526 5.526 14 C 0.078 3.922 15 H 0.049 0.951 16 C -0.121 4.121 17 C -0.070 4.070 18 S -0.298 6.298 19 C -0.063 4.063 20 C 0.052 3.948 21 C -0.101 4.101 22 H 0.262 0.738 23 H 0.014 0.986 24 H 0.012 0.988 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.847 -12.851 -2.237 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.070 4.070 13 N -0.252 5.252 14 C -0.032 4.032 15 H 0.067 0.933 16 C -0.160 4.160 17 C -0.218 4.218 18 S -0.073 6.073 19 C -0.212 4.212 20 C -0.076 4.076 21 C -0.138 4.138 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.971 -13.164 -3.553 21.000 hybrid contribution -0.156 1.129 1.650 2.005 sum 15.815 -12.035 -1.903 19.965 Atomic orbital electron populations 1.69913 1.06294 1.26791 1.51477 1.25029 0.94687 0.99117 0.94706 0.86802 0.80347 0.83780 0.78483 1.20338 1.21530 1.19081 1.21150 0.89516 0.94282 1.50342 0.90992 1.19604 0.97085 0.91741 0.96141 1.21057 0.92401 0.98878 0.96850 1.21724 0.97634 0.94315 1.01525 1.22158 0.99547 0.96371 0.88967 1.62094 1.10344 1.17986 1.34764 1.22410 0.94229 0.90842 0.95700 0.93286 1.22603 0.93876 0.96403 1.03144 1.24186 1.00314 0.99457 0.97885 1.87579 1.16401 1.63475 1.39872 1.24114 0.97284 1.00064 0.99706 1.22291 0.85783 0.99314 1.00179 1.21558 1.01161 0.92662 0.98439 0.92831 0.96798 0.96985 0.92428 0.92038 0.91541 0.95163 0.91323 0.89893 0.89093 0.89292 0.87878 0.87519 0.88844 0.91097 0.95150 0.90245 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.51 -14.34 9.00 -34.44 -0.31 -14.65 16 8 H 0.07 2.14 7.33 -52.49 -0.38 1.76 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 10 C -0.07 -1.39 2.20 -90.50 -0.20 -1.59 16 11 C -0.11 -1.78 5.38 -26.65 -0.14 -1.93 16 12 C 0.06 0.75 5.28 -3.84 -0.02 0.73 16 13 N -0.53 -6.85 4.49 -225.37 -1.01 -7.87 16 14 C 0.08 0.85 2.35 -66.60 -0.16 0.69 16 15 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 16 C -0.12 -1.11 5.18 -25.15 -0.13 -1.24 16 17 C -0.07 -0.59 7.38 38.29 0.28 -0.30 16 18 S -0.30 -3.29 23.26 -107.50 -2.50 -5.79 16 19 C -0.06 -0.69 5.38 37.82 0.20 -0.48 16 20 C 0.05 0.74 5.18 -3.83 -0.02 0.72 16 21 C -0.10 -1.79 5.15 -26.65 -0.14 -1.93 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.77 6.42 -51.93 -0.33 0.43 16 30 H 0.08 0.67 7.12 -51.93 -0.37 0.30 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.11 1.24 7.61 -51.93 -0.40 0.84 16 35 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.07 0.92 6.39 -51.93 -0.33 0.59 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 1.58 7.06 -51.93 -0.37 1.21 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -29.65 305.93 -10.39 -40.04 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.76 Total: -2.54 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -0.83 Total: -18.48 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.24 Total: -34.89 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.50 Total: -5.79 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.65 -10.39 -40.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.861 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds