Wall clock time and date at job start Mon Mar 30 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99706 * 2 1 4 4 H 1.48495 * 109.47285 * 269.99939 * 3 2 1 5 5 H 1.48502 * 109.47297 * 30.00216 * 3 2 1 6 6 H 1.48503 * 109.47000 * 150.00126 * 3 2 1 7 7 C 1.37881 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99568 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46549 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52149 * 184.99775 * 10 9 7 12 12 C 1.53036 * 109.28007 * 182.44032 * 11 10 9 13 13 N 1.46846 * 109.52162 * 59.18140 * 12 11 10 14 14 C 1.46909 * 111.00243 * 174.15828 * 13 12 11 15 15 H 1.09001 * 109.59935 * 54.30426 * 14 13 12 16 16 C 1.53850 * 109.60836 * 174.63908 * 14 13 12 17 17 C 1.55042 * 106.94665 * 167.33757 * 16 14 13 18 18 S 1.83462 * 102.08573 * 317.64197 * 17 16 14 19 19 C 1.54273 * 109.60901 * 293.96431 * 14 13 12 20 20 C 1.46846 * 111.19997 * 298.26076 * 13 12 11 21 21 C 1.53030 * 109.52377 * 61.74000 * 20 13 12 22 22 H 0.97001 * 120.00172 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47385 * 60.00426 * 9 7 2 24 24 H 1.09001 * 109.47246 * 299.99560 * 9 7 2 25 25 H 1.08993 * 109.52716 * 305.12622 * 10 9 7 26 26 H 1.09008 * 109.50062 * 62.50560 * 11 10 9 27 27 H 1.09002 * 109.53946 * 302.40314 * 11 10 9 28 28 H 1.08998 * 109.46728 * 299.16963 * 12 11 10 29 29 H 1.09004 * 109.46553 * 179.19847 * 12 11 10 30 30 H 1.09004 * 109.97633 * 286.53712 * 16 14 13 31 31 H 1.08997 * 109.97927 * 47.81891 * 16 14 13 32 32 H 1.09002 * 110.81659 * 199.54383 * 17 16 14 33 33 H 1.09006 * 111.18892 * 75.90169 * 17 16 14 34 34 H 1.08997 * 110.40372 * 330.91764 * 19 14 13 35 35 H 1.09004 * 110.39852 * 93.21639 * 19 14 13 36 36 H 1.08999 * 109.46373 * 181.76104 * 20 13 12 37 37 H 1.08998 * 109.45881 * 301.72191 * 20 13 12 38 38 H 1.09003 * 109.50272 * 180.88314 * 21 20 13 39 39 H 1.09003 * 109.50540 * 60.76497 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5476 -2.6396 0.1241 12 6 6.0567 -4.0815 0.0625 13 7 5.6508 -4.6911 -1.2103 14 6 6.2390 -6.0285 -1.3648 15 1 5.9891 -6.6402 -0.4979 16 6 5.6886 -6.6904 -2.6398 17 6 6.5711 -7.9339 -2.9205 18 16 8.2570 -7.2917 -2.5866 19 6 7.7720 -5.9086 -1.4894 20 6 4.1883 -4.7422 -1.3321 21 6 3.6235 -3.3201 -1.3121 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6799 -0.8912 25 1 3.5861 -3.1767 0.8395 26 1 5.8356 -2.1924 1.0756 27 1 5.9817 -2.0651 -0.6942 28 1 5.6337 -4.6517 0.8895 29 1 7.1442 -4.0862 0.1370 30 1 4.6549 -6.9987 -2.4829 31 1 5.7469 -5.9937 -3.4760 32 1 6.4751 -8.2507 -3.9590 33 1 6.3262 -8.7519 -2.2429 34 1 8.0432 -4.9535 -1.9393 35 1 8.2421 -6.0141 -0.5116 36 1 3.9187 -5.2269 -2.2705 37 1 3.7741 -5.3093 -0.4986 38 1 2.5367 -3.3590 -1.3867 39 1 4.0267 -2.7564 -2.1534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259732457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:22 Heat of formation + Delta-G solvation = -16.139649 kcal Electronic energy + Delta-G solvation = -17352.136846 eV Core-core repulsion = 14805.712310 eV Total energy + Delta-G solvation = -2546.424536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37432 -36.21764 -33.36841 -31.90059 -30.77441 -29.47463 -27.73132 -24.93601 -23.49779 -22.36894 -20.95425 -20.09157 -19.08864 -16.99728 -16.76359 -16.31533 -15.17200 -14.57693 -14.32942 -14.29527 -13.75020 -13.71816 -13.22754 -12.85999 -12.80918 -12.48300 -12.25293 -11.93954 -11.75271 -11.60709 -11.29481 -11.18859 -10.95411 -10.79193 -10.58577 -10.18841 -10.12670 -9.78667 -9.59995 -9.26432 -9.01305 -8.52242 -8.28494 -7.88250 -6.03172 -4.00251 1.61875 2.14925 3.31626 3.39138 3.42945 3.83374 4.37009 4.46560 4.51719 4.73071 4.89097 4.93484 5.16652 5.26533 5.29527 5.31294 5.40390 5.44975 5.46977 5.60095 5.67309 5.73852 5.85726 5.86798 5.99669 6.10798 6.29227 6.42369 6.52303 6.80942 6.91200 6.99752 7.13575 7.21398 7.31773 7.48243 7.82006 8.55521 9.01661 9.60184 11.10225 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.048726 B = 0.004225 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.507531 B = 6626.071216 C = 6933.615084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.057 3.943 13 N -0.526 5.526 14 C 0.078 3.922 15 H 0.050 0.950 16 C -0.125 4.125 17 C -0.069 4.069 18 S -0.300 6.300 19 C -0.061 4.061 20 C 0.052 3.948 21 C -0.101 4.101 22 H 0.262 0.738 23 H 0.014 0.986 24 H 0.012 0.988 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.738 -13.642 -3.492 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.071 4.071 13 N -0.252 5.252 14 C -0.032 4.032 15 H 0.068 0.932 16 C -0.164 4.164 17 C -0.218 4.218 18 S -0.075 6.075 19 C -0.209 4.209 20 C -0.075 4.075 21 C -0.138 4.138 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.097 0.903 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.832 -13.593 -4.236 20.560 hybrid contribution -1.062 0.791 1.112 1.729 sum 13.770 -12.802 -3.124 19.060 Atomic orbital electron populations 1.69916 1.06292 1.26791 1.51493 1.25031 0.94690 0.99123 0.94702 0.86799 0.80356 0.83767 0.78485 1.20339 1.21526 1.19073 1.21150 0.89520 0.94271 1.50337 0.91003 1.19605 0.97074 0.91754 0.96153 1.21057 0.92412 0.98881 0.96839 1.21725 0.97607 0.94311 1.01553 1.22146 0.99515 0.96408 0.88992 1.62092 1.10337 1.18035 1.34727 1.22405 0.92253 0.90915 0.97608 0.93214 1.22652 0.99699 0.95421 0.98587 1.24176 0.92272 0.99990 1.05312 1.87551 1.15462 1.39333 1.65157 1.24049 0.97085 0.99117 1.00670 1.22310 0.85753 0.99295 1.00173 1.21562 1.01122 0.92711 0.98441 0.92835 0.96786 0.96984 0.92426 0.92016 0.91534 0.95113 0.91412 0.89620 0.88984 0.87844 0.89223 0.87638 0.89090 0.90983 0.95221 0.90275 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.51 -14.31 9.00 -34.44 -0.31 -14.62 16 8 H 0.07 2.14 7.32 -52.49 -0.38 1.75 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 10 C -0.07 -1.39 2.20 -90.49 -0.20 -1.59 16 11 C -0.11 -1.79 5.38 -26.65 -0.14 -1.94 16 12 C 0.06 0.76 5.32 -3.84 -0.02 0.74 16 13 N -0.53 -6.85 4.49 -225.36 -1.01 -7.86 16 14 C 0.08 0.85 2.37 -66.60 -0.16 0.69 16 15 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 16 C -0.12 -1.19 4.62 -25.21 -0.12 -1.30 16 17 C -0.07 -0.59 7.38 38.24 0.28 -0.31 16 18 S -0.30 -3.27 23.25 -107.50 -2.50 -5.77 16 19 C -0.06 -0.63 5.75 37.82 0.22 -0.42 16 20 C 0.05 0.74 5.04 -3.84 -0.02 0.72 16 21 C -0.10 -1.78 5.15 -26.65 -0.14 -1.92 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 23 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.78 7.07 -51.93 -0.37 0.42 16 30 H 0.09 0.75 7.11 -51.93 -0.37 0.38 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.09 0.87 8.08 -51.93 -0.42 0.46 16 36 H 0.07 0.91 6.15 -51.93 -0.32 0.59 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.56 7.05 -51.93 -0.37 1.20 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -29.59 306.47 -10.39 -39.98 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.81 Total: -2.56 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.80 Total: -18.48 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.24 Total: -34.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.50 Total: -5.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.59 -10.39 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.840 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds