Wall clock time and date at job start Mon Mar 30 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99706 * 2 1 4 4 H 1.48495 * 109.47285 * 269.99939 * 3 2 1 5 5 H 1.48502 * 109.47297 * 30.00216 * 3 2 1 6 6 H 1.48503 * 109.47000 * 150.00126 * 3 2 1 7 7 C 1.37881 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99568 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46549 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52149 * 184.99775 * 10 9 7 12 12 C 1.53036 * 109.28007 * 182.44032 * 11 10 9 13 13 N 1.46846 * 109.52162 * 59.18140 * 12 11 10 14 14 C 1.46909 * 111.00243 * 174.15828 * 13 12 11 15 15 H 1.09001 * 109.59935 * 54.30426 * 14 13 12 16 16 C 1.53850 * 109.60836 * 174.63908 * 14 13 12 17 17 C 1.55042 * 106.94665 * 167.33757 * 16 14 13 18 18 S 1.83462 * 102.08573 * 317.64197 * 17 16 14 19 19 C 1.54273 * 109.60901 * 293.96431 * 14 13 12 20 20 C 1.46846 * 111.19997 * 298.26076 * 13 12 11 21 21 C 1.53030 * 109.52377 * 61.74000 * 20 13 12 22 22 H 0.97001 * 120.00172 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47385 * 60.00426 * 9 7 2 24 24 H 1.09001 * 109.47246 * 299.99560 * 9 7 2 25 25 H 1.08993 * 109.52716 * 305.12622 * 10 9 7 26 26 H 1.09008 * 109.50062 * 62.50560 * 11 10 9 27 27 H 1.09002 * 109.53946 * 302.40314 * 11 10 9 28 28 H 1.08998 * 109.46728 * 299.16963 * 12 11 10 29 29 H 1.09004 * 109.46553 * 179.19847 * 12 11 10 30 30 H 1.09004 * 109.97633 * 286.53712 * 16 14 13 31 31 H 1.08997 * 109.97927 * 47.81891 * 16 14 13 32 32 H 1.09002 * 110.81659 * 199.54383 * 17 16 14 33 33 H 1.09006 * 111.18892 * 75.90169 * 17 16 14 34 34 H 1.08997 * 110.40372 * 330.91764 * 19 14 13 35 35 H 1.09004 * 110.39852 * 93.21639 * 19 14 13 36 36 H 1.08999 * 109.46373 * 181.76104 * 20 13 12 37 37 H 1.08998 * 109.45881 * 301.72191 * 20 13 12 38 38 H 1.09003 * 109.50272 * 180.88314 * 21 20 13 39 39 H 1.09003 * 109.50540 * 60.76497 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5476 -2.6396 0.1241 12 6 6.0567 -4.0815 0.0625 13 7 5.6508 -4.6911 -1.2103 14 6 6.2390 -6.0285 -1.3648 15 1 5.9891 -6.6402 -0.4979 16 6 5.6886 -6.6904 -2.6398 17 6 6.5711 -7.9339 -2.9205 18 16 8.2570 -7.2917 -2.5866 19 6 7.7720 -5.9086 -1.4894 20 6 4.1883 -4.7422 -1.3321 21 6 3.6235 -3.3201 -1.3121 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6799 -0.8912 25 1 3.5861 -3.1767 0.8395 26 1 5.8356 -2.1924 1.0756 27 1 5.9817 -2.0651 -0.6942 28 1 5.6337 -4.6517 0.8895 29 1 7.1442 -4.0862 0.1370 30 1 4.6549 -6.9987 -2.4829 31 1 5.7469 -5.9937 -3.4760 32 1 6.4751 -8.2507 -3.9590 33 1 6.3262 -8.7519 -2.2429 34 1 8.0432 -4.9535 -1.9393 35 1 8.2421 -6.0141 -0.5116 36 1 3.9187 -5.2269 -2.2705 37 1 3.7741 -5.3093 -0.4986 38 1 2.5367 -3.3590 -1.3867 39 1 4.0267 -2.7564 -2.1534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259732457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:22 Heat of formation + Delta-G solvation = -33.487628 kcal Electronic energy + Delta-G solvation = -17352.889111 eV Core-core repulsion = 14805.712310 eV Total energy + Delta-G solvation = -2547.176801 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49003 -37.43633 -35.03747 -33.52472 -31.95617 -30.66955 -29.17442 -26.13347 -24.83147 -23.57426 -22.41720 -21.08679 -20.52576 -18.86569 -17.86377 -17.27705 -16.39503 -16.08608 -15.59828 -15.31210 -15.18343 -14.82401 -14.72813 -14.29246 -13.98641 -13.71226 -13.47426 -13.23289 -12.95180 -12.76137 -12.60851 -12.41150 -12.30042 -12.06968 -12.00539 -11.77860 -11.65069 -11.28624 -11.09282 -10.81735 -10.73629 -10.70270 -9.31911 -8.70498 -8.26377 -6.28396 0.85306 1.36142 1.37341 1.38959 1.49167 2.37661 2.85461 3.09313 3.56638 3.72721 3.89409 4.00345 4.05927 4.09431 4.13180 4.24940 4.36894 4.52129 4.58346 4.62828 4.65518 4.73237 4.76536 4.80251 4.88804 4.94867 5.03814 5.09495 5.13128 5.23360 5.32846 5.41687 5.52789 5.71632 5.74418 6.09311 6.13662 6.33968 6.78933 7.35573 8.90259 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.048726 B = 0.004225 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.507531 B = 6626.071216 C = 6933.615084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.518 4.518 8 H 0.035 0.965 9 C -0.006 4.006 10 C -0.072 4.072 11 C -0.107 4.107 12 C 0.061 3.939 13 N -0.531 5.531 14 C 0.080 3.920 15 H 0.055 0.945 16 C -0.123 4.123 17 C -0.056 4.056 18 S -0.337 6.337 19 C -0.051 4.051 20 C 0.063 3.937 21 C -0.097 4.097 22 H 0.264 0.736 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 -14.124 -3.634 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.557 4.557 8 H 0.053 0.947 9 C -0.043 4.043 10 C -0.090 4.090 11 C -0.145 4.145 12 C -0.066 4.066 13 N -0.257 5.257 14 C -0.029 4.029 15 H 0.073 0.927 16 C -0.162 4.162 17 C -0.204 4.204 18 S -0.113 6.113 19 C -0.200 4.200 20 C -0.064 4.064 21 C -0.135 4.135 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.054 -14.095 -4.378 22.554 hybrid contribution -1.813 0.865 1.144 2.312 sum 15.241 -13.230 -3.234 20.439 Atomic orbital electron populations 1.70069 1.08220 1.27909 1.53300 1.25977 0.95532 1.03323 0.94524 0.85715 0.79524 0.78695 0.79055 1.19393 1.21216 1.17154 1.21474 0.92008 0.92891 1.49279 0.94693 1.19570 0.93943 0.94826 0.95994 1.20980 0.95076 0.96001 0.96982 1.21631 0.94458 0.96424 1.02002 1.22111 1.00822 0.94572 0.89144 1.62040 1.09283 1.19675 1.34687 1.22459 0.92420 0.89638 0.98426 0.92736 1.22627 1.00381 0.95587 0.97584 1.24234 0.89840 0.99732 1.06547 1.87718 1.17950 1.39990 1.65607 1.23979 0.96653 0.98446 1.00901 1.22125 0.86661 0.96552 1.01108 1.21430 0.99295 0.95214 0.97513 0.92711 0.96714 0.96752 0.93808 0.91175 0.91601 0.94998 0.89020 0.88634 0.89832 0.86504 0.87864 0.88311 0.88067 0.89253 0.95347 0.93479 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.52 -29.64 9.00 25.60 0.23 -29.41 16 8 H 0.03 2.19 7.32 -2.91 -0.02 2.17 16 9 C -0.01 -0.28 3.52 29.85 0.11 -0.17 16 10 C -0.07 -2.71 2.20 -10.71 -0.02 -2.74 16 11 C -0.11 -3.16 5.38 30.65 0.16 -3.00 16 12 C 0.06 1.45 5.32 86.33 0.46 1.91 16 13 N -0.53 -12.58 4.49 -866.92 -3.89 -16.47 16 14 C 0.08 1.51 2.37 45.63 0.11 1.62 16 15 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 16 C -0.12 -2.01 4.62 31.58 0.15 -1.87 16 17 C -0.06 -0.80 7.38 72.68 0.54 -0.26 16 18 S -0.34 -6.67 23.25 -56.49 -1.31 -7.98 16 19 C -0.05 -0.94 5.75 72.41 0.42 -0.53 16 20 C 0.06 1.70 5.04 86.32 0.44 2.13 16 21 C -0.10 -3.44 5.15 30.65 0.16 -3.28 16 22 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 24 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.79 7.07 -2.39 -0.02 1.77 16 30 H 0.10 1.40 7.11 -2.39 -0.02 1.38 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 35 H 0.10 1.65 8.08 -2.38 -0.02 1.63 16 36 H 0.09 2.10 6.15 -2.39 -0.01 2.08 16 37 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 1.94 7.05 -2.39 -0.02 1.93 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -64.81 306.47 1.12 -63.70 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.94 Total: 8.94 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.20 Total: -34.96 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.59 Total: -76.27 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -1.31 Total: -7.98 kcal Total: -64.81 1.12 -63.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.210 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds