Wall clock time and date at job start Mon Mar 30 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99781 * 2 1 4 4 H 1.48498 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46847 * 300.00101 * 3 2 1 6 6 H 1.48497 * 109.46974 * 60.00183 * 3 2 1 7 7 C 1.37869 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47365 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.22099 * 55.23397 * 10 9 7 12 12 C 1.52584 * 109.19632 * 295.85172 * 10 9 7 13 13 C 1.53095 * 109.95502 * 310.37663 * 12 10 9 14 14 S 1.81746 * 108.84164 * 296.97361 * 13 12 10 15 15 C 1.81754 * 102.22311 * 53.26556 * 14 13 12 16 16 C 1.52587 * 109.22533 * 174.63573 * 10 9 7 17 17 H 1.09000 * 109.38571 * 169.75781 * 16 10 9 18 18 N 1.46898 * 109.39141 * 289.45560 * 16 10 9 19 19 C 1.48531 * 111.00132 * 178.66990 * 18 16 10 20 20 C 1.54935 * 103.22621 * 159.72246 * 19 18 16 21 21 C 1.54602 * 102.92298 * 322.58446 * 20 19 18 22 22 C 1.47906 * 110.99979 * 296.06606 * 18 16 10 23 23 H 0.96995 * 120.00503 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46592 * 60.00642 * 9 7 2 25 25 H 1.09000 * 109.47152 * 300.00477 * 9 7 2 26 26 H 1.09004 * 109.38728 * 70.51996 * 12 10 9 27 27 H 1.08995 * 109.39386 * 190.22840 * 12 10 9 28 28 H 1.08996 * 109.57559 * 177.16602 * 13 12 10 29 29 H 1.09003 * 109.57653 * 56.77871 * 13 12 10 30 30 H 1.08993 * 109.57750 * 186.92886 * 15 14 13 31 31 H 1.08999 * 109.67865 * 66.60308 * 15 14 13 32 32 H 1.08994 * 110.66461 * 278.15658 * 19 18 16 33 33 H 1.09000 * 110.66403 * 41.28658 * 19 18 16 34 34 H 1.09004 * 110.72370 * 204.22588 * 20 19 18 35 35 H 1.09000 * 110.87881 * 81.01231 * 20 19 18 36 36 H 1.09000 * 110.30641 * 263.04256 * 21 20 19 37 37 H 1.09002 * 110.39027 * 140.91843 * 21 20 19 38 38 H 1.08995 * 109.91730 * 333.50797 * 22 18 16 39 39 H 1.09003 * 109.91800 * 94.60408 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9246 -3.5533 0.8450 12 6 3.0489 -3.6350 -1.2973 13 6 2.1037 -3.5108 -2.4952 14 16 1.0395 -4.9828 -2.5582 15 6 0.3375 -5.0221 -0.8822 16 6 1.4816 -4.9761 0.1342 17 1 2.1605 -5.8093 -0.0471 18 7 0.9321 -5.0838 1.4922 19 6 0.1529 -6.3381 1.6532 20 6 0.1176 -6.5388 3.1891 21 6 1.5224 -6.0686 3.6316 22 6 2.0143 -5.1495 2.4982 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.7295 -2.7836 -1.2836 27 1 3.6254 -4.5558 -1.3851 28 1 2.6859 -3.4415 -3.4141 29 1 1.4872 -2.6190 -2.3831 30 1 -0.2342 -5.9401 -0.7471 31 1 -0.3147 -4.1609 -0.7371 32 1 -0.8556 -6.2179 1.2577 33 1 0.6609 -7.1714 1.1679 34 1 -0.0335 -7.5894 3.4375 35 1 -0.6568 -5.9212 3.6439 36 1 2.1899 -6.9232 3.7423 37 1 1.4598 -5.5143 4.5681 38 1 2.9154 -5.5654 2.0476 39 1 2.2203 -4.1525 2.8877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259734582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:28 Heat of formation + Delta-G solvation = -8.104484 kcal Electronic energy + Delta-G solvation = -18077.970691 eV Core-core repulsion = 15531.894586 eV Total energy + Delta-G solvation = -2546.076105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30350 -36.51315 -32.71792 -31.87552 -29.15387 -28.64706 -27.88103 -25.65549 -22.96033 -22.56668 -20.73745 -20.45203 -18.05909 -16.46508 -16.41024 -15.69469 -15.17326 -14.54833 -14.28588 -14.20315 -13.72888 -13.08005 -12.86136 -12.76020 -12.44072 -12.03808 -11.84303 -11.62387 -11.30029 -11.19207 -11.07476 -10.88686 -10.81939 -10.69195 -10.43101 -10.36220 -10.10432 -9.73959 -9.20745 -9.12529 -8.89583 -8.30953 -7.97627 -7.17995 -5.96521 -3.98035 2.34627 3.02330 3.30995 3.39384 3.41884 4.34095 4.47279 4.81963 4.83638 5.08037 5.28291 5.34290 5.39450 5.43551 5.56834 5.64110 5.66770 5.76508 5.83795 5.88951 5.90616 5.93511 6.12314 6.21036 6.26909 6.33138 6.35371 6.40593 6.61041 6.67707 6.77891 7.14943 7.23779 7.45208 7.74012 7.91702 8.07926 8.46518 9.09037 9.65264 11.14182 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.008057 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.312642 B = 3474.464051 C = 4417.016430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.030 3.970 10 C -0.087 4.087 11 H 0.065 0.935 12 C -0.100 4.100 13 C -0.072 4.072 14 S -0.298 6.298 15 C -0.067 4.067 16 C 0.088 3.912 17 H 0.037 0.963 18 N -0.499 5.499 19 C 0.031 3.969 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.040 3.960 23 H 0.258 0.742 24 H 0.020 0.980 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -12.287 2.393 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.106 4.106 11 H 0.084 0.916 12 C -0.139 4.139 13 C -0.219 4.219 14 S -0.072 6.072 15 C -0.216 4.216 16 C -0.021 4.021 17 H 0.055 0.945 18 N -0.224 5.224 19 C -0.097 4.097 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.088 4.088 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.849 -12.402 1.583 12.638 hybrid contribution 1.185 1.142 0.804 1.831 sum 3.034 -11.260 2.387 11.904 Atomic orbital electron populations 1.69969 1.05900 1.26260 1.50944 1.24970 0.94736 0.98914 0.95593 0.86665 0.80141 0.84433 0.77531 1.19894 1.21147 1.21154 1.21278 0.92799 0.91090 1.50238 0.92930 1.19250 0.93460 0.90021 0.97970 1.21211 0.98195 0.94698 0.96503 0.91629 1.21566 0.97489 1.01119 0.93713 1.23563 0.99472 0.97686 1.01220 1.86313 1.60158 1.40552 1.20179 1.23486 1.00111 1.06032 0.91929 1.22053 0.94172 0.98493 0.87418 0.94477 1.64777 1.20697 1.33731 1.03192 1.23242 0.99218 0.91260 0.95934 1.22451 0.97505 1.00548 0.95483 1.22397 0.96624 0.98888 0.98922 1.22812 0.93144 1.00377 0.92500 0.93189 0.96211 0.95030 0.90293 0.93270 0.89330 0.87132 0.89314 0.87694 0.90192 0.94280 0.91623 0.90713 0.92051 0.91160 0.94234 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.52 -13.85 8.44 -34.44 -0.29 -14.14 16 8 H 0.05 1.39 7.02 -52.49 -0.37 1.02 16 9 C 0.03 0.72 3.08 -27.88 -0.09 0.64 16 10 C -0.09 -1.72 2.01 -91.05 -0.18 -1.90 16 11 H 0.07 1.33 6.85 -51.93 -0.36 0.97 16 12 C -0.10 -1.81 5.01 -26.90 -0.13 -1.95 16 13 C -0.07 -1.32 6.00 37.21 0.22 -1.09 16 14 S -0.30 -5.26 22.33 -107.50 -2.40 -7.66 16 15 C -0.07 -1.18 5.16 37.21 0.19 -0.99 16 16 C 0.09 1.53 1.20 -67.88 -0.08 1.45 16 17 H 0.04 0.63 7.88 -51.93 -0.41 0.23 16 18 N -0.50 -8.26 4.69 -222.70 -1.04 -9.30 16 19 C 0.03 0.43 5.33 -1.90 -0.01 0.42 16 20 C -0.12 -1.43 7.06 -24.87 -0.18 -1.60 16 21 C -0.13 -1.55 6.93 -25.37 -0.18 -1.73 16 22 C 0.04 0.59 5.41 -2.75 -0.01 0.58 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.51 4.51 -51.93 -0.23 0.28 16 25 H 0.03 0.86 7.78 -51.93 -0.40 0.46 16 26 H 0.08 1.49 7.20 -51.93 -0.37 1.11 16 27 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.11 2.37 5.99 -51.93 -0.31 2.06 16 30 H 0.09 1.38 6.74 -51.93 -0.35 1.03 16 31 H 0.10 2.12 6.27 -51.93 -0.33 1.80 16 32 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 33 H 0.04 0.51 8.01 -51.93 -0.42 0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.08 1.37 7.97 -51.93 -0.41 0.95 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -28.51 300.78 -10.45 -38.96 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.42 Total: 1.41 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.83 Total: -18.76 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.31 Total: -34.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -2.40 Total: -7.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.51 -10.45 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.860 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds