Wall clock time and date at job start Mon Mar 30 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99781 * 2 1 4 4 H 1.48498 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46847 * 300.00101 * 3 2 1 6 6 H 1.48497 * 109.46974 * 60.00183 * 3 2 1 7 7 C 1.37869 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47365 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.22099 * 55.23397 * 10 9 7 12 12 C 1.52584 * 109.19632 * 295.85172 * 10 9 7 13 13 C 1.53095 * 109.95502 * 310.37663 * 12 10 9 14 14 S 1.81746 * 108.84164 * 296.97361 * 13 12 10 15 15 C 1.81754 * 102.22311 * 53.26556 * 14 13 12 16 16 C 1.52587 * 109.22533 * 174.63573 * 10 9 7 17 17 H 1.09000 * 109.38571 * 169.75781 * 16 10 9 18 18 N 1.46898 * 109.39141 * 289.45560 * 16 10 9 19 19 C 1.48531 * 111.00132 * 178.66990 * 18 16 10 20 20 C 1.54935 * 103.22621 * 159.72246 * 19 18 16 21 21 C 1.54602 * 102.92298 * 322.58446 * 20 19 18 22 22 C 1.47906 * 110.99979 * 296.06606 * 18 16 10 23 23 H 0.96995 * 120.00503 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46592 * 60.00642 * 9 7 2 25 25 H 1.09000 * 109.47152 * 300.00477 * 9 7 2 26 26 H 1.09004 * 109.38728 * 70.51996 * 12 10 9 27 27 H 1.08995 * 109.39386 * 190.22840 * 12 10 9 28 28 H 1.08996 * 109.57559 * 177.16602 * 13 12 10 29 29 H 1.09003 * 109.57653 * 56.77871 * 13 12 10 30 30 H 1.08993 * 109.57750 * 186.92886 * 15 14 13 31 31 H 1.08999 * 109.67865 * 66.60308 * 15 14 13 32 32 H 1.08994 * 110.66461 * 278.15658 * 19 18 16 33 33 H 1.09000 * 110.66403 * 41.28658 * 19 18 16 34 34 H 1.09004 * 110.72370 * 204.22588 * 20 19 18 35 35 H 1.09000 * 110.87881 * 81.01231 * 20 19 18 36 36 H 1.09000 * 110.30641 * 263.04256 * 21 20 19 37 37 H 1.09002 * 110.39027 * 140.91843 * 21 20 19 38 38 H 1.08995 * 109.91730 * 333.50797 * 22 18 16 39 39 H 1.09003 * 109.91800 * 94.60408 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9246 -3.5533 0.8450 12 6 3.0489 -3.6350 -1.2973 13 6 2.1037 -3.5108 -2.4952 14 16 1.0395 -4.9828 -2.5582 15 6 0.3375 -5.0221 -0.8822 16 6 1.4816 -4.9761 0.1342 17 1 2.1605 -5.8093 -0.0471 18 7 0.9321 -5.0838 1.4922 19 6 0.1529 -6.3381 1.6532 20 6 0.1176 -6.5388 3.1891 21 6 1.5224 -6.0686 3.6316 22 6 2.0143 -5.1495 2.4982 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.7295 -2.7836 -1.2836 27 1 3.6254 -4.5558 -1.3851 28 1 2.6859 -3.4415 -3.4141 29 1 1.4872 -2.6190 -2.3831 30 1 -0.2342 -5.9401 -0.7471 31 1 -0.3147 -4.1609 -0.7371 32 1 -0.8556 -6.2179 1.2577 33 1 0.6609 -7.1714 1.1679 34 1 -0.0335 -7.5894 3.4375 35 1 -0.6568 -5.9212 3.6439 36 1 2.1899 -6.9232 3.7423 37 1 1.4598 -5.5143 4.5681 38 1 2.9154 -5.5654 2.0476 39 1 2.2203 -4.1525 2.8877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259734582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:28 Heat of formation + Delta-G solvation = -24.289637 kcal Electronic energy + Delta-G solvation = -18078.672532 eV Core-core repulsion = 15531.894586 eV Total energy + Delta-G solvation = -2546.777946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61319 -37.93573 -34.69272 -33.29273 -30.48067 -30.17898 -29.28148 -27.33003 -24.87919 -23.91369 -21.95350 -21.56108 -19.62124 -18.45021 -17.83613 -16.86774 -16.65244 -16.36153 -15.89220 -15.66402 -14.94035 -14.59820 -14.23853 -14.15637 -13.98549 -13.55846 -13.25571 -13.06724 -13.01197 -12.75828 -12.50796 -12.34602 -12.19523 -12.19132 -11.97471 -11.70941 -11.45636 -11.38982 -10.95211 -10.90273 -10.59444 -10.46146 -9.21952 -8.62452 -8.12421 -6.20372 0.91222 1.38306 1.40003 1.50951 1.56631 2.43133 3.13923 3.21506 3.64787 3.75808 3.85874 4.00572 4.08854 4.13386 4.22318 4.33434 4.38791 4.44790 4.63658 4.71838 4.75324 4.80753 4.87629 4.93308 5.02055 5.04165 5.05425 5.09505 5.20902 5.25926 5.36073 5.45933 5.63248 5.87271 5.98410 6.07282 6.20246 6.35619 6.97279 7.47059 8.98770 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.008057 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.312642 B = 3474.464051 C = 4417.016430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.081 4.081 11 H 0.059 0.941 12 C -0.095 4.095 13 C -0.072 4.072 14 S -0.281 6.281 15 C -0.064 4.064 16 C 0.099 3.901 17 H 0.052 0.948 18 N -0.529 5.529 19 C 0.030 3.970 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.038 3.962 23 H 0.259 0.741 24 H 0.001 0.999 25 H -0.008 1.008 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -13.885 2.469 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.100 4.100 11 H 0.077 0.923 12 C -0.134 4.134 13 C -0.220 4.220 14 S -0.055 6.055 15 C -0.212 4.212 16 C -0.011 4.011 17 H 0.070 0.930 18 N -0.254 5.254 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.090 4.090 23 H 0.067 0.933 24 H 0.019 0.981 25 H 0.011 0.989 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.185 -14.011 1.662 14.464 hybrid contribution 0.730 1.630 0.783 1.950 sum 3.914 -12.381 2.446 13.213 Atomic orbital electron populations 1.70108 1.07566 1.27070 1.52401 1.25807 0.95513 1.02636 0.95462 0.85619 0.79333 0.80024 0.77404 1.18637 1.20787 1.21053 1.21676 0.93137 0.92279 1.49075 0.92566 1.18960 0.93511 0.91355 0.95058 1.21080 0.97277 0.94347 0.97314 0.92297 1.21525 0.97165 1.02130 0.92580 1.23474 0.99351 0.96681 1.02481 1.86203 1.59862 1.39266 1.20141 1.23429 0.99972 1.05533 0.92302 1.21857 0.93891 0.97193 0.88156 0.93000 1.64699 1.21686 1.36103 1.02904 1.23313 0.98616 0.90240 0.97583 1.22451 0.97019 1.02131 0.93832 1.22381 0.97092 0.98990 0.97697 1.22801 0.93211 0.99795 0.93230 0.93262 0.98122 0.98929 0.91109 0.90533 0.86954 0.90934 0.87074 0.91197 0.90538 0.92900 0.88768 0.91603 0.89774 0.90830 0.93611 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.44 0.28 -56.35 16 2 C 0.00 0.18 5.46 84.65 0.46 0.65 16 3 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 7 C -0.52 -28.78 8.44 25.60 0.22 -28.56 16 8 H 0.06 2.99 7.02 -2.91 -0.02 2.97 16 9 C 0.05 2.43 3.08 29.85 0.09 2.52 16 10 C -0.08 -3.22 2.01 -11.07 -0.02 -3.25 16 11 H 0.06 2.40 6.85 -2.39 -0.02 2.39 16 12 C -0.09 -3.35 5.01 30.49 0.15 -3.20 16 13 C -0.07 -2.60 6.00 72.01 0.43 -2.17 16 14 S -0.28 -9.56 22.33 -56.49 -1.26 -10.82 16 15 C -0.06 -2.22 5.16 72.01 0.37 -1.85 16 16 C 0.10 3.36 1.20 44.81 0.05 3.42 16 17 H 0.05 1.64 7.88 -2.39 -0.02 1.62 16 18 N -0.53 -17.30 4.69 -858.50 -4.03 -21.33 16 19 C 0.03 0.76 5.33 86.65 0.46 1.22 16 20 C -0.12 -2.45 7.06 31.80 0.22 -2.23 16 21 C -0.12 -2.68 6.93 31.47 0.22 -2.47 16 22 C 0.04 1.10 5.41 86.44 0.47 1.56 16 23 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 24 H 0.00 0.04 4.51 -2.38 -0.01 0.03 16 25 H -0.01 -0.45 7.78 -2.39 -0.02 -0.47 16 26 H 0.07 2.61 7.20 -2.39 -0.02 2.59 16 27 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 28 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.07 3.19 5.99 -2.39 -0.01 3.18 16 30 H 0.11 3.31 6.74 -2.39 -0.02 3.30 16 31 H 0.07 2.93 6.27 -2.39 -0.01 2.92 16 32 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 33 H 0.05 1.21 8.01 -2.39 -0.02 1.19 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.25 7.66 -2.39 -0.02 1.23 16 39 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 Total: -1.00 -62.62 300.78 1.16 -61.45 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.01 Total: 14.99 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.13 Total: -34.35 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.74 Total: -77.68 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.26 Total: -10.82 kcal Total: -62.62 1.16 -61.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.163 kcal (2) G-P(sol) polarization free energy of solvation -62.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds