Wall clock time and date at job start Mon Mar 30 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48501 * 109.47374 * 269.99975 * 3 2 1 5 5 H 1.48504 * 109.46985 * 30.00180 * 3 2 1 6 6 H 1.48504 * 109.47327 * 150.00025 * 3 2 1 7 7 C 1.37881 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46653 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.22524 * 304.39941 * 10 9 7 12 12 C 1.52581 * 109.19226 * 63.78888 * 10 9 7 13 13 C 1.53102 * 109.95878 * 49.61856 * 12 10 9 14 14 S 1.81744 * 108.83822 * 63.02614 * 13 12 10 15 15 C 1.81748 * 102.22096 * 306.73407 * 14 13 12 16 16 C 1.52580 * 109.22358 * 184.99854 * 10 9 7 17 17 H 1.08994 * 109.31382 * 190.30021 * 16 10 9 18 18 N 1.46899 * 109.39142 * 70.54931 * 16 10 9 19 19 C 1.48527 * 111.00075 * 57.10635 * 18 16 10 20 20 C 1.54942 * 103.22815 * 159.72576 * 19 18 16 21 21 C 1.54598 * 102.91921 * 322.58442 * 20 19 18 22 22 C 1.47898 * 111.00342 * 174.50938 * 18 16 10 23 23 H 0.96993 * 120.00104 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47047 * 59.99879 * 9 7 2 25 25 H 1.08996 * 109.46953 * 299.99924 * 9 7 2 26 26 H 1.09000 * 109.39174 * 169.77020 * 12 10 9 27 27 H 1.09001 * 109.38570 * 289.47068 * 12 10 9 28 28 H 1.08997 * 109.57493 * 182.83741 * 13 12 10 29 29 H 1.09003 * 109.57440 * 303.08936 * 13 12 10 30 30 H 1.08998 * 109.57842 * 293.45887 * 15 14 13 31 31 H 1.09010 * 109.57199 * 173.07531 * 15 14 13 32 32 H 1.09008 * 110.67015 * 278.16004 * 19 18 16 33 33 H 1.08999 * 110.66575 * 41.28648 * 19 18 16 34 34 H 1.09001 * 110.72067 * 204.23078 * 20 19 18 35 35 H 1.08994 * 110.87568 * 81.01413 * 20 19 18 36 36 H 1.09000 * 110.31124 * 263.04590 * 21 20 19 37 37 H 1.08995 * 110.38789 * 140.91548 * 21 20 19 38 38 H 1.09003 * 109.91719 * 333.49910 * 22 18 16 39 39 H 1.08994 * 109.92358 * 94.80271 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 1 2.9207 -3.5561 -0.8519 12 6 3.0552 -3.6307 1.2901 13 6 2.1157 -3.5027 2.4922 14 16 1.0519 -4.9745 2.5650 15 6 0.3420 -5.0191 0.8925 16 6 1.4812 -4.9765 -0.1294 17 1 2.1618 -5.8082 0.0524 18 7 0.9252 -5.0887 -1.4845 19 6 1.9964 -4.9934 -2.5090 20 6 1.3495 -5.6399 -3.7596 21 6 0.5204 -6.7988 -3.1599 22 6 0.2883 -6.4078 -1.6886 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8880 26 1 3.6322 -4.5513 1.3782 27 1 3.7357 -2.7794 1.2704 28 1 2.7023 -3.4303 3.4080 29 1 1.5003 -2.6099 2.3812 30 1 -0.3097 -4.1573 0.7491 31 1 -0.2304 -5.9378 0.7632 32 1 2.2517 -3.9516 -2.7030 33 1 2.8774 -5.5549 -2.1978 34 1 2.1144 -6.0224 -4.4354 35 1 0.7030 -4.9289 -4.2739 36 1 1.0781 -7.7334 -3.2195 37 1 -0.4323 -6.8934 -3.6810 38 1 0.7463 -7.1470 -1.0314 39 1 -0.7807 -6.3393 -1.4868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259734603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:30 Heat of formation + Delta-G solvation = -7.915986 kcal Electronic energy + Delta-G solvation = -18094.341134 eV Core-core repulsion = 15548.273202 eV Total energy + Delta-G solvation = -2546.067931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31130 -36.49947 -32.72205 -31.86899 -29.14197 -28.65223 -27.87632 -25.65851 -22.95621 -22.52270 -20.98823 -20.18145 -18.14644 -16.46383 -16.39171 -15.62551 -15.17567 -14.56661 -14.29119 -14.12255 -13.81028 -13.20127 -12.78185 -12.65468 -12.43589 -12.08483 -11.83373 -11.61773 -11.25519 -11.21190 -11.02597 -10.99427 -10.74254 -10.68079 -10.44725 -10.36982 -10.10991 -9.73902 -9.20511 -9.11114 -8.90565 -8.31475 -7.98590 -7.17559 -5.97049 -3.98830 2.35575 3.03136 3.31464 3.38749 3.40434 4.35619 4.46664 4.81633 4.86657 5.07374 5.29632 5.34709 5.38855 5.46078 5.56978 5.64722 5.68550 5.77306 5.83327 5.89393 5.90731 5.96188 6.13818 6.22380 6.29799 6.32703 6.36582 6.41096 6.60947 6.66959 6.76966 7.14021 7.24213 7.45466 7.73204 7.90110 8.06882 8.45429 9.08042 9.64473 11.13549 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.008167 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.104171 B = 3427.681652 C = 4419.179920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.030 3.970 10 C -0.090 4.090 11 H 0.067 0.933 12 C -0.099 4.099 13 C -0.072 4.072 14 S -0.299 6.299 15 C -0.065 4.065 16 C 0.088 3.912 17 H 0.038 0.962 18 N -0.500 5.500 19 C 0.039 3.961 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.033 3.967 23 H 0.259 0.741 24 H 0.031 0.969 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -11.992 -2.542 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.070 0.930 9 C -0.007 4.007 10 C -0.109 4.109 11 H 0.085 0.915 12 C -0.138 4.138 13 C -0.219 4.219 14 S -0.073 6.073 15 C -0.213 4.213 16 C -0.022 4.022 17 H 0.055 0.945 18 N -0.225 5.225 19 C -0.089 4.089 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.095 4.095 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.111 -12.149 -1.694 12.447 hybrid contribution 1.208 1.143 -0.823 1.856 sum 3.320 -11.006 -2.518 11.768 Atomic orbital electron populations 1.69959 1.05905 1.26392 1.50766 1.24972 0.94734 0.98907 0.95561 0.86720 0.79895 0.84097 0.78020 1.20830 1.21340 1.20023 1.21240 0.92758 0.91086 1.50475 0.92967 1.19250 0.93433 0.89996 0.98011 1.21270 0.98214 0.94724 0.96680 0.91505 1.21563 0.97496 1.01110 0.93679 1.23554 0.99487 0.97700 1.01186 1.86311 1.59960 1.40563 1.20450 1.23448 1.00078 1.06014 0.91767 1.22041 0.94054 0.98471 0.87591 0.94464 1.64747 1.26568 1.28593 1.02573 1.23198 0.92878 1.01681 0.91157 1.22475 0.99031 0.97399 0.97233 1.22380 1.00418 0.98173 0.95770 1.22882 1.00467 0.90463 0.95704 0.93115 0.95089 0.96146 0.93273 0.90294 0.89356 0.87138 0.87704 0.89395 0.89195 0.94343 0.91561 0.90659 0.92043 0.91311 0.94249 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.81 8.42 -34.44 -0.29 -14.10 16 8 H 0.05 1.36 6.99 -52.49 -0.37 1.00 16 9 C 0.03 0.72 3.08 -27.88 -0.09 0.64 16 10 C -0.09 -1.76 1.92 -91.05 -0.18 -1.94 16 11 H 0.07 1.33 6.28 -51.93 -0.33 1.00 16 12 C -0.10 -1.80 5.00 -26.89 -0.13 -1.94 16 13 C -0.07 -1.31 5.99 37.21 0.22 -1.09 16 14 S -0.30 -5.29 22.33 -107.50 -2.40 -7.69 16 15 C -0.06 -1.14 5.31 37.21 0.20 -0.94 16 16 C 0.09 1.53 1.21 -67.88 -0.08 1.45 16 17 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 18 N -0.50 -8.27 4.70 -222.70 -1.05 -9.32 16 19 C 0.04 0.58 5.29 -1.90 -0.01 0.57 16 20 C -0.12 -1.53 7.06 -24.87 -0.18 -1.70 16 21 C -0.13 -1.49 6.93 -25.37 -0.18 -1.66 16 22 C 0.03 0.45 5.50 -2.75 -0.02 0.44 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.03 0.84 7.79 -51.93 -0.40 0.43 16 25 H 0.02 0.53 4.51 -51.93 -0.23 0.30 16 26 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 27 H 0.08 1.48 7.18 -51.93 -0.37 1.11 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.11 2.37 5.99 -51.93 -0.31 2.06 16 30 H 0.10 2.13 6.25 -51.93 -0.32 1.81 16 31 H 0.09 1.39 7.25 -51.92 -0.38 1.02 16 32 H 0.09 1.51 7.39 -51.92 -0.38 1.13 16 33 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.52 7.65 -51.93 -0.40 0.12 16 39 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -28.30 300.72 -10.43 -38.73 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.41 Total: 1.65 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -0.82 Total: -18.72 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.31 Total: -34.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -2.40 Total: -7.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.30 -10.43 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.812 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds