Wall clock time and date at job start Mon Mar 30 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48501 * 109.47374 * 269.99975 * 3 2 1 5 5 H 1.48504 * 109.46985 * 30.00180 * 3 2 1 6 6 H 1.48504 * 109.47327 * 150.00025 * 3 2 1 7 7 C 1.37881 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46653 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.22524 * 304.39941 * 10 9 7 12 12 C 1.52581 * 109.19226 * 63.78888 * 10 9 7 13 13 C 1.53102 * 109.95878 * 49.61856 * 12 10 9 14 14 S 1.81744 * 108.83822 * 63.02614 * 13 12 10 15 15 C 1.81748 * 102.22096 * 306.73407 * 14 13 12 16 16 C 1.52580 * 109.22358 * 184.99854 * 10 9 7 17 17 H 1.08994 * 109.31382 * 190.30021 * 16 10 9 18 18 N 1.46899 * 109.39142 * 70.54931 * 16 10 9 19 19 C 1.48527 * 111.00075 * 57.10635 * 18 16 10 20 20 C 1.54942 * 103.22815 * 159.72576 * 19 18 16 21 21 C 1.54598 * 102.91921 * 322.58442 * 20 19 18 22 22 C 1.47898 * 111.00342 * 174.50938 * 18 16 10 23 23 H 0.96993 * 120.00104 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47047 * 59.99879 * 9 7 2 25 25 H 1.08996 * 109.46953 * 299.99924 * 9 7 2 26 26 H 1.09000 * 109.39174 * 169.77020 * 12 10 9 27 27 H 1.09001 * 109.38570 * 289.47068 * 12 10 9 28 28 H 1.08997 * 109.57493 * 182.83741 * 13 12 10 29 29 H 1.09003 * 109.57440 * 303.08936 * 13 12 10 30 30 H 1.08998 * 109.57842 * 293.45887 * 15 14 13 31 31 H 1.09010 * 109.57199 * 173.07531 * 15 14 13 32 32 H 1.09008 * 110.67015 * 278.16004 * 19 18 16 33 33 H 1.08999 * 110.66575 * 41.28648 * 19 18 16 34 34 H 1.09001 * 110.72067 * 204.23078 * 20 19 18 35 35 H 1.08994 * 110.87568 * 81.01413 * 20 19 18 36 36 H 1.09000 * 110.31124 * 263.04590 * 21 20 19 37 37 H 1.08995 * 110.38789 * 140.91548 * 21 20 19 38 38 H 1.09003 * 109.91719 * 333.49910 * 22 18 16 39 39 H 1.08994 * 109.92358 * 94.80271 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 1 2.9207 -3.5561 -0.8519 12 6 3.0552 -3.6307 1.2901 13 6 2.1157 -3.5027 2.4922 14 16 1.0519 -4.9745 2.5650 15 6 0.3420 -5.0191 0.8925 16 6 1.4812 -4.9765 -0.1294 17 1 2.1618 -5.8082 0.0524 18 7 0.9252 -5.0887 -1.4845 19 6 1.9964 -4.9934 -2.5090 20 6 1.3495 -5.6399 -3.7596 21 6 0.5204 -6.7988 -3.1599 22 6 0.2883 -6.4078 -1.6886 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8880 26 1 3.6322 -4.5513 1.3782 27 1 3.7357 -2.7794 1.2704 28 1 2.7023 -3.4303 3.4080 29 1 1.5003 -2.6099 2.3812 30 1 -0.3097 -4.1573 0.7491 31 1 -0.2304 -5.9378 0.7632 32 1 2.2517 -3.9516 -2.7030 33 1 2.8774 -5.5549 -2.1978 34 1 2.1144 -6.0224 -4.4354 35 1 0.7030 -4.9289 -4.2739 36 1 1.0781 -7.7334 -3.2195 37 1 -0.4323 -6.8934 -3.6810 38 1 0.7463 -7.1470 -1.0314 39 1 -0.7807 -6.3393 -1.4868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259734603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:30 Heat of formation + Delta-G solvation = -23.901145 kcal Electronic energy + Delta-G solvation = -18095.034302 eV Core-core repulsion = 15548.273202 eV Total energy + Delta-G solvation = -2546.761100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62669 -37.91783 -34.69095 -33.28921 -30.51708 -30.11599 -29.30552 -27.32755 -24.87566 -23.86817 -22.20464 -21.29048 -19.70449 -18.44260 -17.82799 -16.82185 -16.66954 -16.36110 -15.87818 -15.56774 -15.08238 -14.59905 -14.23006 -14.14879 -13.85083 -13.70271 -13.23642 -13.06548 -12.92924 -12.76814 -12.52207 -12.36945 -12.17941 -12.14746 -12.03746 -11.70450 -11.43720 -11.40015 -10.94254 -10.90312 -10.57702 -10.45530 -9.22579 -8.62698 -8.12069 -6.20166 0.91485 1.39753 1.40294 1.50153 1.56974 2.43408 3.14498 3.21830 3.64998 3.77255 3.86158 4.01031 4.08808 4.13788 4.23044 4.33825 4.38237 4.45796 4.63803 4.72484 4.74423 4.81537 4.87860 4.95705 5.01001 5.03567 5.06453 5.09535 5.22243 5.24985 5.36370 5.45904 5.63364 5.86959 5.98279 6.06791 6.20654 6.35455 6.97395 7.47277 8.98907 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.008167 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.104171 B = 3427.681652 C = 4419.179920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.084 4.084 11 H 0.063 0.937 12 C -0.094 4.094 13 C -0.072 4.072 14 S -0.282 6.282 15 C -0.062 4.062 16 C 0.099 3.901 17 H 0.052 0.948 18 N -0.528 5.528 19 C 0.037 3.963 20 C -0.118 4.118 21 C -0.122 4.122 22 C 0.031 3.969 23 H 0.259 0.741 24 H -0.008 1.008 25 H 0.000 1.000 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -13.560 -2.691 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.103 4.103 11 H 0.081 0.919 12 C -0.134 4.134 13 C -0.220 4.220 14 S -0.056 6.056 15 C -0.210 4.210 16 C -0.011 4.011 17 H 0.070 0.930 18 N -0.254 5.254 19 C -0.091 4.091 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.097 4.097 23 H 0.067 0.933 24 H 0.010 0.990 25 H 0.018 0.982 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.592 -13.727 -1.847 14.309 hybrid contribution 0.708 1.620 -0.779 1.932 sum 4.300 -12.107 -2.626 13.113 Atomic orbital electron populations 1.70104 1.07590 1.27134 1.52309 1.25810 0.95497 1.02639 0.95449 0.85675 0.78929 0.79683 0.78123 1.20396 1.21338 1.18692 1.21650 0.93156 0.92231 1.49206 0.92475 1.18957 0.93487 0.91364 0.95060 1.21139 0.97328 0.94259 0.97559 0.91886 1.21526 0.97160 1.02142 0.92546 1.23469 0.99370 0.96647 1.02481 1.86201 1.59683 1.39325 1.20383 1.23386 0.99989 1.05394 0.92233 1.21854 0.93733 0.97254 0.88288 0.92977 1.64681 1.27431 1.30951 1.02294 1.23174 0.93260 1.00469 0.92167 1.22457 0.99477 0.97398 0.96318 1.22370 1.01114 0.98478 0.93986 1.22949 1.00004 0.89149 0.97603 0.93268 0.98960 0.98173 0.90531 0.91059 0.87000 0.90944 0.91251 0.87334 0.92065 0.93176 0.89117 0.91862 0.89835 0.90289 0.93240 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.52 -28.63 8.42 25.60 0.22 -28.42 16 8 H 0.06 3.00 6.99 -2.91 -0.02 2.98 16 9 C 0.05 2.43 3.08 29.85 0.09 2.52 16 10 C -0.08 -3.30 1.92 -11.07 -0.02 -3.32 16 11 H 0.06 2.52 6.28 -2.39 -0.01 2.50 16 12 C -0.09 -3.33 5.00 30.49 0.15 -3.18 16 13 C -0.07 -2.60 5.99 72.02 0.43 -2.16 16 14 S -0.28 -9.66 22.33 -56.49 -1.26 -10.92 16 15 C -0.06 -2.16 5.31 72.01 0.38 -1.77 16 16 C 0.10 3.35 1.21 44.81 0.05 3.41 16 17 H 0.05 1.64 7.86 -2.39 -0.02 1.63 16 18 N -0.53 -17.27 4.70 -858.50 -4.03 -21.30 16 19 C 0.04 1.09 5.29 86.65 0.46 1.55 16 20 C -0.12 -2.72 7.06 31.80 0.22 -2.50 16 21 C -0.12 -2.46 6.93 31.48 0.22 -2.24 16 22 C 0.03 0.78 5.50 86.45 0.48 1.25 16 23 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 24 H -0.01 -0.46 7.79 -2.39 -0.02 -0.48 16 25 H 0.00 0.01 4.51 -2.39 -0.01 0.00 16 26 H 0.08 2.31 8.05 -2.39 -0.02 2.29 16 27 H 0.07 2.61 7.18 -2.39 -0.02 2.59 16 28 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.07 3.19 5.99 -2.39 -0.01 3.18 16 30 H 0.07 2.94 6.25 -2.39 -0.01 2.92 16 31 H 0.11 3.31 7.25 -2.38 -0.02 3.29 16 32 H 0.06 2.11 7.39 -2.38 -0.02 2.09 16 33 H 0.05 1.34 8.02 -2.39 -0.02 1.32 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.16 7.65 -2.39 -0.02 1.14 16 39 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 Total: -1.00 -62.17 300.72 1.18 -61.00 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.01 Total: 15.49 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 3.15 Total: -34.21 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -3.75 Total: -77.57 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -1.26 Total: -10.92 kcal Total: -62.17 1.18 -61.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.094 kcal (2) G-P(sol) polarization free energy of solvation -62.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds