Wall clock time and date at job start Mon Mar 30 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46954 * 299.99722 * 3 2 1 6 6 H 1.48495 * 109.47379 * 60.00114 * 3 2 1 7 7 C 1.37882 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47128 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.21567 * 305.00005 * 10 9 7 12 12 C 1.52581 * 109.22718 * 64.40020 * 10 9 7 13 13 C 1.53112 * 109.94561 * 191.03846 * 12 10 9 14 14 S 1.81750 * 108.80984 * 296.91577 * 13 12 10 15 15 C 1.81747 * 102.21871 * 53.28904 * 14 13 12 16 16 C 1.52579 * 109.22949 * 185.60259 * 10 9 7 17 17 H 1.09002 * 109.38752 * 289.14891 * 16 10 9 18 18 N 1.46905 * 109.38940 * 48.85071 * 16 10 9 19 19 C 1.48533 * 111.00115 * 69.67853 * 18 16 10 20 20 C 1.54931 * 103.22608 * 159.71681 * 19 18 16 21 21 C 1.54600 * 102.92734 * 322.58719 * 20 19 18 22 22 C 1.47904 * 110.99835 * 187.07451 * 18 16 10 23 23 H 0.97004 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47213 * 60.00292 * 9 7 2 25 25 H 1.09003 * 109.47562 * 300.00016 * 9 7 2 26 26 H 1.08994 * 109.39260 * 311.15071 * 12 10 9 27 27 H 1.09001 * 109.38533 * 70.84893 * 12 10 9 28 28 H 1.09004 * 109.57623 * 177.13155 * 13 12 10 29 29 H 1.08996 * 109.71768 * 56.78712 * 13 12 10 30 30 H 1.09003 * 109.57243 * 186.92638 * 15 14 13 31 31 H 1.08996 * 109.68276 * 66.60368 * 15 14 13 32 32 H 1.09001 * 110.66680 * 278.15657 * 19 18 16 33 33 H 1.09005 * 110.66374 * 41.28718 * 19 18 16 34 34 H 1.09005 * 110.72135 * 204.22741 * 20 19 18 35 35 H 1.09003 * 110.72366 * 80.94518 * 20 19 18 36 36 H 1.08996 * 110.30631 * 263.04434 * 21 20 19 37 37 H 1.08995 * 110.30920 * 140.86836 * 21 20 19 38 38 H 1.09002 * 109.91418 * 333.50962 * 22 18 16 39 39 H 1.09002 * 109.91852 * 94.80260 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9269 -3.5513 -0.8437 12 6 3.0447 -3.6396 1.2987 13 6 4.2213 -4.6150 1.2049 14 16 3.5708 -6.3008 1.0095 15 6 2.4592 -6.1212 -0.4172 16 6 1.4817 -4.9758 -0.1412 17 1 0.9377 -5.1787 0.7813 18 7 0.5285 -4.8692 -1.2539 19 6 1.2368 -4.8187 -2.5585 20 6 0.1424 -5.2367 -3.5724 21 6 -0.6431 -6.3246 -2.8046 22 6 -0.3480 -6.0589 -1.3167 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8897 26 1 3.4232 -2.6325 1.4733 27 1 2.3980 -3.9302 2.1267 28 1 4.8174 -4.5568 2.1156 29 1 4.8418 -4.3611 0.3455 30 1 1.9040 -7.0473 -0.5663 31 1 3.0419 -5.8969 -1.3106 32 1 1.5883 -3.8082 -2.7666 33 1 2.0658 -5.5264 -2.5738 34 1 0.5911 -5.6501 -4.4757 35 1 -0.5034 -4.3921 -3.8129 36 1 -0.2917 -7.3164 -3.0887 37 1 -1.7110 -6.2299 -3.0012 38 1 0.1607 -6.9183 -0.8799 39 1 -1.2780 -5.8636 -0.7828 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259734625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:32 Heat of formation + Delta-G solvation = -6.851864 kcal Electronic energy + Delta-G solvation = -18001.255102 eV Core-core repulsion = 15455.233315 eV Total energy + Delta-G solvation = -2546.021787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45590 -36.15399 -32.78009 -31.96812 -29.37708 -28.66835 -28.30480 -25.33442 -22.90776 -22.14091 -20.90103 -20.20976 -18.80856 -16.96362 -16.10413 -15.55241 -15.24683 -14.63307 -14.31561 -14.08716 -13.67958 -13.27685 -13.08283 -12.86649 -12.37456 -12.12758 -11.96122 -11.58072 -11.26143 -11.13390 -11.08437 -10.90211 -10.79242 -10.65166 -10.48375 -10.33092 -10.08862 -9.69509 -9.58150 -9.16935 -8.84511 -8.28767 -8.03740 -7.31674 -5.92019 -3.93278 2.03024 2.75651 3.32827 3.40982 3.43459 4.35488 4.49810 4.82816 4.90968 5.02647 5.08254 5.15836 5.29174 5.41716 5.45365 5.49511 5.55248 5.65448 5.76782 5.88022 5.90681 5.94580 5.99756 6.13076 6.22557 6.30329 6.32091 6.41372 6.45351 6.78596 6.92943 7.16953 7.29710 7.47729 7.82508 8.02530 8.19728 8.51297 9.15235 9.69090 11.18606 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.008016 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.313426 B = 3492.356896 C = 4720.731541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.052 0.948 9 C 0.039 3.961 10 C -0.077 4.077 11 H 0.053 0.947 12 C -0.110 4.110 13 C -0.075 4.075 14 S -0.286 6.286 15 C -0.112 4.112 16 C 0.084 3.916 17 H 0.087 0.913 18 N -0.487 5.487 19 C 0.028 3.972 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.029 3.971 23 H 0.257 0.743 24 H 0.041 0.959 25 H 0.011 0.989 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -12.591 -3.229 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.002 3.998 10 C -0.096 4.096 11 H 0.072 0.928 12 C -0.149 4.149 13 C -0.223 4.223 14 S -0.061 6.061 15 C -0.262 4.262 16 C -0.026 4.026 17 H 0.105 0.895 18 N -0.210 5.210 19 C -0.100 4.100 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.099 4.099 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.674 -12.920 -2.527 13.434 hybrid contribution 0.728 1.221 -0.782 1.623 sum 3.403 -11.699 -3.309 12.625 Atomic orbital electron populations 1.69994 1.05882 1.26094 1.51016 1.24976 0.94731 0.98852 0.95704 0.86682 0.80122 0.84533 0.77501 1.19930 1.21188 1.21172 1.21337 0.92742 0.91363 1.50158 0.93006 1.19011 0.93136 0.89154 0.98461 1.21157 0.97799 0.94701 0.95948 0.92807 1.21782 0.94797 0.99354 0.98950 1.23586 1.01045 0.92810 1.04828 1.86490 1.57408 1.18413 1.43787 1.24258 1.00025 1.03719 0.98153 1.22199 0.91431 0.93976 0.94982 0.89529 1.65060 1.17659 1.36249 1.02018 1.23355 0.95499 1.01972 0.89190 1.22473 0.97660 0.98681 0.97311 1.22370 1.00830 0.98506 0.94996 1.22928 0.98327 0.92215 0.96446 0.93282 0.94086 0.97024 0.89068 0.91580 0.88549 0.90330 0.88707 0.89702 0.89254 0.93811 0.91658 0.90563 0.92134 0.91267 0.94105 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.08 8.23 -34.44 -0.28 -14.37 16 8 H 0.05 1.37 7.08 -52.49 -0.37 1.00 16 9 C 0.04 0.98 4.25 -27.88 -0.12 0.86 16 10 C -0.08 -1.51 1.25 -91.05 -0.11 -1.62 16 11 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 12 C -0.11 -1.97 4.98 -26.89 -0.13 -2.11 16 13 C -0.07 -1.13 6.46 37.22 0.24 -0.89 16 14 S -0.29 -4.34 22.33 -107.50 -2.40 -6.74 16 15 C -0.11 -1.64 4.88 37.21 0.18 -1.46 16 16 C 0.08 1.43 1.59 -67.88 -0.11 1.32 16 17 H 0.09 1.57 8.03 -51.93 -0.42 1.15 16 18 N -0.49 -8.18 3.88 -222.69 -0.86 -9.04 16 19 C 0.03 0.42 5.57 -1.90 -0.01 0.41 16 20 C -0.12 -1.59 7.06 -24.87 -0.18 -1.76 16 21 C -0.13 -1.53 6.93 -25.37 -0.18 -1.71 16 22 C 0.03 0.40 6.46 -2.75 -0.02 0.38 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.04 1.11 7.08 -51.93 -0.37 0.74 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 1.79 6.62 -51.93 -0.34 1.44 16 27 H 0.07 1.20 8.05 -51.93 -0.42 0.79 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.29 6.26 -51.93 -0.33 0.97 16 31 H 0.08 1.23 6.12 -51.93 -0.32 0.91 16 32 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 33 H 0.04 0.61 5.40 -51.93 -0.28 0.33 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.53 5.90 -51.93 -0.31 0.22 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -28.89 303.12 -10.27 -39.17 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.48 Total: 0.83 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.81 Total: -19.38 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.13 Total: -34.88 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.40 Total: -6.74 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.89 -10.27 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.314 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds