Wall clock time and date at job start Mon Mar 30 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46954 * 299.99722 * 3 2 1 6 6 H 1.48495 * 109.47379 * 60.00114 * 3 2 1 7 7 C 1.37882 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47128 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.21567 * 305.00005 * 10 9 7 12 12 C 1.52581 * 109.22718 * 64.40020 * 10 9 7 13 13 C 1.53112 * 109.94561 * 191.03846 * 12 10 9 14 14 S 1.81750 * 108.80984 * 296.91577 * 13 12 10 15 15 C 1.81747 * 102.21871 * 53.28904 * 14 13 12 16 16 C 1.52579 * 109.22949 * 185.60259 * 10 9 7 17 17 H 1.09002 * 109.38752 * 289.14891 * 16 10 9 18 18 N 1.46905 * 109.38940 * 48.85071 * 16 10 9 19 19 C 1.48533 * 111.00115 * 69.67853 * 18 16 10 20 20 C 1.54931 * 103.22608 * 159.71681 * 19 18 16 21 21 C 1.54600 * 102.92734 * 322.58719 * 20 19 18 22 22 C 1.47904 * 110.99835 * 187.07451 * 18 16 10 23 23 H 0.97004 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47213 * 60.00292 * 9 7 2 25 25 H 1.09003 * 109.47562 * 300.00016 * 9 7 2 26 26 H 1.08994 * 109.39260 * 311.15071 * 12 10 9 27 27 H 1.09001 * 109.38533 * 70.84893 * 12 10 9 28 28 H 1.09004 * 109.57623 * 177.13155 * 13 12 10 29 29 H 1.08996 * 109.71768 * 56.78712 * 13 12 10 30 30 H 1.09003 * 109.57243 * 186.92638 * 15 14 13 31 31 H 1.08996 * 109.68276 * 66.60368 * 15 14 13 32 32 H 1.09001 * 110.66680 * 278.15657 * 19 18 16 33 33 H 1.09005 * 110.66374 * 41.28718 * 19 18 16 34 34 H 1.09005 * 110.72135 * 204.22741 * 20 19 18 35 35 H 1.09003 * 110.72366 * 80.94518 * 20 19 18 36 36 H 1.08996 * 110.30631 * 263.04434 * 21 20 19 37 37 H 1.08995 * 110.30920 * 140.86836 * 21 20 19 38 38 H 1.09002 * 109.91418 * 333.50962 * 22 18 16 39 39 H 1.09002 * 109.91852 * 94.80260 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9269 -3.5513 -0.8437 12 6 3.0447 -3.6396 1.2987 13 6 4.2213 -4.6150 1.2049 14 16 3.5708 -6.3008 1.0095 15 6 2.4592 -6.1212 -0.4172 16 6 1.4817 -4.9758 -0.1412 17 1 0.9377 -5.1787 0.7813 18 7 0.5285 -4.8692 -1.2539 19 6 1.2368 -4.8187 -2.5585 20 6 0.1424 -5.2367 -3.5724 21 6 -0.6431 -6.3246 -2.8046 22 6 -0.3480 -6.0589 -1.3167 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8897 26 1 3.4232 -2.6325 1.4733 27 1 2.3980 -3.9302 2.1267 28 1 4.8174 -4.5568 2.1156 29 1 4.8418 -4.3611 0.3455 30 1 1.9040 -7.0473 -0.5663 31 1 3.0419 -5.8969 -1.3106 32 1 1.5883 -3.8082 -2.7666 33 1 2.0658 -5.5264 -2.5738 34 1 0.5911 -5.6501 -4.4757 35 1 -0.5034 -4.3921 -3.8129 36 1 -0.2917 -7.3164 -3.0887 37 1 -1.7110 -6.2299 -3.0012 38 1 0.1607 -6.9183 -0.8799 39 1 -1.2780 -5.8636 -0.7828 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259734625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:31 Heat of formation + Delta-G solvation = -22.801832 kcal Electronic energy + Delta-G solvation = -18001.946745 eV Core-core repulsion = 15455.233315 eV Total energy + Delta-G solvation = -2546.713430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74647 -37.59098 -34.79632 -33.27814 -31.14851 -29.83070 -29.49157 -27.16920 -24.21074 -23.90100 -22.20358 -21.44395 -20.25328 -18.55998 -17.91191 -16.74150 -16.60258 -16.34484 -15.68514 -15.29902 -15.16903 -14.71019 -14.50412 -14.22086 -13.93400 -13.51525 -13.36885 -13.05282 -12.93007 -12.69640 -12.55925 -12.36612 -12.19769 -12.12098 -11.93653 -11.67852 -11.41447 -11.36082 -11.22365 -10.91797 -10.62011 -10.45803 -9.28054 -8.54382 -8.10793 -6.19291 0.82314 1.39506 1.40535 1.52085 1.53121 2.44048 3.14040 3.22234 3.58402 3.77504 3.86192 3.93123 3.95625 4.08767 4.14110 4.26911 4.35502 4.44953 4.54240 4.64199 4.70309 4.76603 4.88434 4.91874 4.97298 5.01480 5.10380 5.18561 5.28242 5.30588 5.37038 5.43487 5.65701 5.92142 6.05306 6.11422 6.20925 6.36448 6.99981 7.47681 9.00549 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.008016 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.313426 B = 3492.356896 C = 4720.731541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.054 3.946 10 C -0.067 4.067 11 H 0.049 0.951 12 C -0.105 4.105 13 C -0.068 4.068 14 S -0.280 6.280 15 C -0.101 4.101 16 C 0.093 3.907 17 H 0.071 0.929 18 N -0.521 5.521 19 C 0.028 3.972 20 C -0.120 4.120 21 C -0.120 4.120 22 C 0.027 3.973 23 H 0.258 0.742 24 H 0.012 0.988 25 H -0.026 1.026 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -14.022 -3.823 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.017 3.983 10 C -0.086 4.086 11 H 0.068 0.932 12 C -0.144 4.144 13 C -0.216 4.216 14 S -0.055 6.055 15 C -0.251 4.251 16 C -0.018 4.018 17 H 0.089 0.911 18 N -0.245 5.245 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.100 4.100 23 H 0.067 0.933 24 H 0.031 0.969 25 H -0.007 1.007 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.201 -14.366 -3.122 15.289 hybrid contribution 0.204 1.674 -0.583 1.784 sum 4.405 -12.692 -3.705 13.936 Atomic orbital electron populations 1.70140 1.07654 1.27048 1.52360 1.25865 0.95566 1.02800 0.95454 0.85577 0.79290 0.79797 0.77450 1.18561 1.20872 1.20814 1.21740 0.93191 0.92432 1.49185 0.92406 1.18749 0.93374 0.91053 0.95173 1.20954 0.96708 0.94219 0.96690 0.93229 1.21650 0.95743 0.99412 0.97643 1.23500 0.99730 0.92018 1.06352 1.86511 1.57277 1.17692 1.43994 1.24147 0.99453 1.03221 0.98252 1.21936 0.91674 0.93342 0.94802 0.91069 1.64945 1.18423 1.38535 1.02552 1.23313 0.96776 1.00662 0.89183 1.22460 0.96846 0.98599 0.97861 1.22358 1.01211 0.99293 0.92976 1.22974 0.97383 0.91477 0.98195 0.93268 0.96927 1.00717 0.90979 0.92279 0.86467 0.89529 0.86880 0.89046 0.92496 0.91967 0.88979 0.92412 0.89482 0.90610 0.92616 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.53 -29.46 8.23 25.60 0.21 -29.25 16 8 H 0.06 3.09 7.08 -2.91 -0.02 3.07 16 9 C 0.05 2.81 4.25 29.85 0.13 2.93 16 10 C -0.07 -2.66 1.25 -11.07 -0.01 -2.67 16 11 H 0.05 2.01 7.66 -2.39 -0.02 1.99 16 12 C -0.11 -3.79 4.98 30.49 0.15 -3.64 16 13 C -0.07 -1.93 6.46 72.02 0.46 -1.46 16 14 S -0.28 -7.83 22.33 -56.49 -1.26 -9.09 16 15 C -0.10 -2.75 4.88 72.01 0.35 -2.40 16 16 C 0.09 3.14 1.59 44.81 0.07 3.21 16 17 H 0.07 2.61 8.03 -2.39 -0.02 2.59 16 18 N -0.52 -17.62 3.88 -858.47 -3.33 -20.95 16 19 C 0.03 0.84 5.57 86.65 0.48 1.32 16 20 C -0.12 -2.92 7.06 31.80 0.22 -2.69 16 21 C -0.12 -2.58 6.93 31.47 0.22 -2.36 16 22 C 0.03 0.73 6.46 86.45 0.56 1.29 16 23 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 24 H 0.01 0.71 7.08 -2.39 -0.02 0.70 16 25 H -0.03 -1.51 8.14 -2.39 -0.02 -1.53 16 26 H 0.07 2.85 6.62 -2.39 -0.02 2.84 16 27 H 0.06 2.18 8.05 -2.39 -0.02 2.16 16 28 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.11 2.71 6.26 -2.39 -0.01 2.69 16 31 H 0.09 2.41 6.12 -2.39 -0.01 2.39 16 32 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 33 H 0.06 1.61 5.40 -2.38 -0.01 1.60 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.31 5.90 -2.39 -0.01 1.30 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -63.88 303.12 2.04 -61.84 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.01 Total: 13.94 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.31 Total: -35.22 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.04 Total: -78.08 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.26 Total: -9.09 kcal Total: -63.88 2.04 -61.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.039 kcal (2) G-P(sol) polarization free energy of solvation -63.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds