Wall clock time and date at job start Mon Mar 30 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48497 * 109.46984 * 359.97438 * 3 2 1 5 5 H 1.48488 * 109.47307 * 119.99992 * 3 2 1 6 6 H 1.48497 * 109.46916 * 240.00276 * 3 2 1 7 7 C 1.37879 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99730 * 173.33306 * 7 2 1 9 9 C 1.50695 * 119.99744 * 353.33303 * 7 2 1 10 10 H 1.09002 * 109.52834 * 328.80378 * 9 7 2 11 11 C 1.53122 * 109.52573 * 88.99461 * 9 7 2 12 12 C 1.53043 * 109.27834 * 62.24482 * 11 9 7 13 13 N 1.46851 * 109.51850 * 59.18204 * 12 11 9 14 14 C 1.46850 * 111.19930 * 298.25933 * 13 12 11 15 15 H 1.09005 * 109.46051 * 301.72359 * 14 13 12 16 16 C 1.52999 * 109.45336 * 181.75459 * 14 13 12 17 17 C 1.52580 * 109.22805 * 180.54832 * 16 14 13 18 18 C 1.53114 * 109.95018 * 168.96090 * 17 16 14 19 19 S 1.81752 * 108.80441 * 63.08701 * 18 17 16 20 20 C 1.81742 * 102.22172 * 306.71332 * 19 18 17 21 21 C 1.52581 * 109.22892 * 59.35245 * 16 14 13 22 22 C 1.53031 * 109.52231 * 61.74186 * 14 13 12 23 23 H 0.96996 * 120.00004 * 174.72592 * 1 2 3 24 24 H 1.08992 * 109.50688 * 182.18764 * 11 9 7 25 25 H 1.09004 * 109.50158 * 302.31184 * 11 9 7 26 26 H 1.09000 * 109.46323 * 299.17203 * 12 11 9 27 27 H 1.08990 * 109.45836 * 179.19211 * 12 11 9 28 28 H 1.00905 * 110.99926 * 174.16355 * 13 12 11 29 29 H 1.08999 * 109.22371 * 299.95021 * 16 14 13 30 30 H 1.09001 * 109.39236 * 289.15449 * 17 16 14 31 31 H 1.08998 * 109.38871 * 48.85025 * 17 16 14 32 32 H 1.08999 * 109.60874 * 303.28048 * 18 17 16 33 33 H 1.08998 * 109.68292 * 182.93596 * 18 17 16 34 34 H 1.09004 * 109.58012 * 293.45701 * 20 19 18 35 35 H 1.09003 * 109.57741 * 173.07610 * 20 19 18 36 36 H 1.09005 * 109.39292 * 311.14707 * 21 16 14 37 37 H 1.09003 * 109.38755 * 70.84410 * 21 16 14 38 38 H 1.09006 * 109.50056 * 180.87802 * 22 14 13 39 39 H 1.09001 * 109.53592 * 60.78979 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0790 -1.1972 -0.1091 9 6 1.2586 -2.4947 0.1504 10 1 0.3733 -2.3377 0.7666 11 6 0.8384 -3.0069 -1.2301 12 6 2.0884 -3.2822 -2.0690 13 7 2.9246 -4.2806 -1.3904 14 6 3.3792 -3.7919 -0.0823 15 1 3.9385 -2.8657 -0.2151 16 6 4.2805 -4.8427 0.5691 17 6 4.7387 -4.3357 1.9333 18 6 5.4084 -5.4697 2.7142 19 16 6.8969 -6.0001 1.8162 20 6 6.2431 -6.3404 0.1549 21 6 5.4786 -5.1088 -0.3374 22 6 2.1677 -3.5318 0.8157 23 1 -0.4850 -0.8365 -0.0772 24 1 0.2655 -3.9273 -1.1179 25 1 0.2256 -2.2542 -1.7264 26 1 2.6538 -2.3584 -2.1923 27 1 1.7930 -3.6605 -3.0475 28 1 3.7072 -4.5495 -1.9678 29 1 3.7175 -5.7668 0.7003 30 1 5.4495 -3.5207 1.7964 31 1 3.8767 -3.9718 2.4923 32 1 4.7183 -6.3086 2.8050 33 1 5.6872 -5.1170 3.7071 34 1 5.5693 -7.1963 0.1957 35 1 7.0676 -6.5546 -0.5253 36 1 5.1305 -5.2821 -1.3558 37 1 6.1408 -4.2431 -0.3254 38 1 2.5048 -3.1542 1.7811 39 1 1.6155 -4.4603 0.9608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259750354.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:53 Heat of formation + Delta-G solvation = -28.223325 kcal Electronic energy + Delta-G solvation = -17983.256242 eV Core-core repulsion = 15436.307719 eV Total energy + Delta-G solvation = -2546.948523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.04819 -36.18149 -33.19547 -31.70753 -30.33297 -30.23730 -26.32332 -24.63920 -23.31446 -21.99397 -21.73360 -19.83843 -19.02313 -16.94258 -16.21784 -15.90159 -14.63601 -14.47798 -14.15636 -13.74835 -13.63898 -13.40564 -13.18739 -12.94437 -12.90665 -12.61824 -12.12518 -12.00055 -11.36432 -11.05378 -10.95098 -10.84047 -10.74461 -10.50739 -10.27769 -10.17209 -10.11062 -9.65572 -9.34779 -9.09231 -8.51947 -8.26871 -7.72310 -7.67218 -6.33539 -4.04384 1.77210 2.51110 3.41070 3.42456 3.60983 4.51891 4.55091 4.73806 4.80604 4.98787 5.03006 5.20292 5.31141 5.37121 5.47173 5.63485 5.71090 5.81675 5.96427 5.98582 6.02130 6.02563 6.17824 6.24236 6.31254 6.45298 6.50334 6.60781 6.82888 6.86292 6.99533 7.13948 7.38119 7.46055 7.79542 8.00800 8.27060 8.45272 8.89193 9.67050 11.04303 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.006068 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.777937 B = 4613.514236 C = 5055.143341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 1.059 2.941 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.586 4.586 8 H 0.047 0.953 9 C 0.025 3.975 10 H 0.030 0.970 11 C -0.104 4.104 12 C 0.073 3.927 13 N -0.688 5.688 14 C 0.104 3.896 15 H 0.047 0.953 16 C -0.088 4.088 17 C -0.121 4.121 18 C -0.073 4.073 19 S -0.286 6.286 20 C -0.073 4.073 21 C -0.119 4.119 22 C -0.092 4.092 23 H 0.270 0.730 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.323 0.677 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 -10.856 0.630 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.888 3.112 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.624 4.624 8 H 0.065 0.935 9 C 0.006 3.994 10 H 0.048 0.952 11 C -0.142 4.142 12 C -0.056 4.056 13 N -0.320 5.320 14 C -0.005 4.005 15 H 0.065 0.935 16 C -0.107 4.107 17 C -0.160 4.160 18 C -0.221 4.221 19 S -0.060 6.060 20 C -0.221 4.221 21 C -0.158 4.158 22 C -0.130 4.130 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.194 -9.638 1.334 14.092 hybrid contribution -0.310 -0.936 -0.858 1.307 sum 9.884 -10.574 0.476 14.482 Atomic orbital electron populations 1.70778 1.06902 1.30881 1.46375 1.25714 0.96500 1.02349 0.93820 0.83685 0.75060 0.76023 0.76420 1.20842 1.21521 1.21694 1.21897 0.94318 0.91712 1.54505 0.93522 1.18920 0.95157 0.93596 0.91704 0.95178 1.21655 0.95336 0.97861 0.99371 1.21750 0.95492 0.92992 0.95380 1.60468 1.23966 1.42895 1.04670 1.21353 0.95160 0.94424 0.89580 0.93474 1.21194 0.95383 0.99959 0.94200 1.21850 1.01375 0.97014 0.95731 1.23460 0.96364 1.01478 1.00837 1.86724 1.19515 1.88333 1.11458 1.23406 1.02901 1.01076 0.94767 1.21814 0.97107 0.96957 0.99941 1.21594 0.95773 0.98155 0.97505 0.91848 0.95027 0.92865 0.94238 0.93321 0.85852 0.90941 0.90728 0.89583 0.90034 0.88055 0.89970 0.88245 0.90590 0.90947 0.92654 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.96 13.56 55.43 0.75 -26.21 16 2 C 0.02 0.56 5.45 -17.82 -0.10 0.47 16 3 Si 1.06 24.78 29.91 -169.99 -5.08 19.70 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.59 -15.51 6.87 -34.44 -0.24 -15.74 16 8 H 0.05 1.24 6.21 -52.49 -0.33 0.91 16 9 C 0.03 0.60 2.24 -91.65 -0.21 0.40 16 10 H 0.03 0.80 6.96 -51.93 -0.36 0.44 16 11 C -0.10 -2.31 5.49 -26.65 -0.15 -2.46 16 12 C 0.07 1.43 6.34 -3.83 -0.02 1.40 16 13 N -0.69 -11.91 6.49 -106.76 -0.69 -12.61 16 14 C 0.10 1.85 1.87 -67.72 -0.13 1.72 16 15 H 0.05 0.96 6.42 -51.93 -0.33 0.63 16 16 C -0.09 -1.24 1.71 -91.05 -0.16 -1.40 16 17 C -0.12 -1.63 4.94 -26.89 -0.13 -1.76 16 18 C -0.07 -0.86 6.46 37.22 0.24 -0.62 16 19 S -0.29 -3.54 22.33 -107.50 -2.40 -5.94 16 20 C -0.07 -0.80 6.45 37.21 0.24 -0.56 16 21 C -0.12 -1.45 4.96 -26.90 -0.13 -1.58 16 22 C -0.09 -1.87 4.49 -26.65 -0.12 -1.99 16 23 H 0.27 7.95 6.46 -40.82 -0.26 7.68 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 1.28 7.79 -51.93 -0.40 0.88 16 26 H 0.04 0.86 7.31 -51.93 -0.38 0.48 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.32 4.83 6.52 -39.29 -0.26 4.57 16 29 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 31 H 0.09 1.23 5.86 -51.93 -0.30 0.92 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.88 5.97 -51.93 -0.31 0.57 16 37 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 38 H 0.05 1.11 6.21 -51.93 -0.32 0.79 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 297.78 15.07 4.49 4.49 Total: -1.00 -28.33 297.78 -10.11 -38.44 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.27 Total: 4.25 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.90 Total: -22.12 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.06 Total: -38.81 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.40 Total: -5.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.33 -10.11 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750354.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.215 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds