Wall clock time and date at job start Mon Mar 30 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48497 * 109.46984 * 359.97438 * 3 2 1 5 5 H 1.48488 * 109.47307 * 119.99992 * 3 2 1 6 6 H 1.48497 * 109.46916 * 240.00276 * 3 2 1 7 7 C 1.37879 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99730 * 173.33306 * 7 2 1 9 9 C 1.50695 * 119.99744 * 353.33303 * 7 2 1 10 10 H 1.09002 * 109.52834 * 328.80378 * 9 7 2 11 11 C 1.53122 * 109.52573 * 88.99461 * 9 7 2 12 12 C 1.53043 * 109.27834 * 62.24482 * 11 9 7 13 13 N 1.46851 * 109.51850 * 59.18204 * 12 11 9 14 14 C 1.46850 * 111.19930 * 298.25933 * 13 12 11 15 15 H 1.09005 * 109.46051 * 301.72359 * 14 13 12 16 16 C 1.52999 * 109.45336 * 181.75459 * 14 13 12 17 17 C 1.52580 * 109.22805 * 180.54832 * 16 14 13 18 18 C 1.53114 * 109.95018 * 168.96090 * 17 16 14 19 19 S 1.81752 * 108.80441 * 63.08701 * 18 17 16 20 20 C 1.81742 * 102.22172 * 306.71332 * 19 18 17 21 21 C 1.52581 * 109.22892 * 59.35245 * 16 14 13 22 22 C 1.53031 * 109.52231 * 61.74186 * 14 13 12 23 23 H 0.96996 * 120.00004 * 174.72592 * 1 2 3 24 24 H 1.08992 * 109.50688 * 182.18764 * 11 9 7 25 25 H 1.09004 * 109.50158 * 302.31184 * 11 9 7 26 26 H 1.09000 * 109.46323 * 299.17203 * 12 11 9 27 27 H 1.08990 * 109.45836 * 179.19211 * 12 11 9 28 28 H 1.00905 * 110.99926 * 174.16355 * 13 12 11 29 29 H 1.08999 * 109.22371 * 299.95021 * 16 14 13 30 30 H 1.09001 * 109.39236 * 289.15449 * 17 16 14 31 31 H 1.08998 * 109.38871 * 48.85025 * 17 16 14 32 32 H 1.08999 * 109.60874 * 303.28048 * 18 17 16 33 33 H 1.08998 * 109.68292 * 182.93596 * 18 17 16 34 34 H 1.09004 * 109.58012 * 293.45701 * 20 19 18 35 35 H 1.09003 * 109.57741 * 173.07610 * 20 19 18 36 36 H 1.09005 * 109.39292 * 311.14707 * 21 16 14 37 37 H 1.09003 * 109.38755 * 70.84410 * 21 16 14 38 38 H 1.09006 * 109.50056 * 180.87802 * 22 14 13 39 39 H 1.09001 * 109.53592 * 60.78979 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0790 -1.1972 -0.1091 9 6 1.2586 -2.4947 0.1504 10 1 0.3733 -2.3377 0.7666 11 6 0.8384 -3.0069 -1.2301 12 6 2.0884 -3.2822 -2.0690 13 7 2.9246 -4.2806 -1.3904 14 6 3.3792 -3.7919 -0.0823 15 1 3.9385 -2.8657 -0.2151 16 6 4.2805 -4.8427 0.5691 17 6 4.7387 -4.3357 1.9333 18 6 5.4084 -5.4697 2.7142 19 16 6.8969 -6.0001 1.8162 20 6 6.2431 -6.3404 0.1549 21 6 5.4786 -5.1088 -0.3374 22 6 2.1677 -3.5318 0.8157 23 1 -0.4850 -0.8365 -0.0772 24 1 0.2655 -3.9273 -1.1179 25 1 0.2256 -2.2542 -1.7264 26 1 2.6538 -2.3584 -2.1923 27 1 1.7930 -3.6605 -3.0475 28 1 3.7072 -4.5495 -1.9678 29 1 3.7175 -5.7668 0.7003 30 1 5.4495 -3.5207 1.7964 31 1 3.8767 -3.9718 2.4923 32 1 4.7183 -6.3086 2.8050 33 1 5.6872 -5.1170 3.7071 34 1 5.5693 -7.1963 0.1957 35 1 7.0676 -6.5546 -0.5253 36 1 5.1305 -5.2821 -1.3558 37 1 6.1408 -4.2431 -0.3254 38 1 2.5048 -3.1542 1.7811 39 1 1.6155 -4.4603 0.9608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750354.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:53 Heat of formation + Delta-G solvation = -44.461433 kcal Electronic energy + Delta-G solvation = -17983.960379 eV Core-core repulsion = 15436.307719 eV Total energy + Delta-G solvation = -2547.652661 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50835 -37.58683 -35.04876 -32.88819 -31.92340 -31.75056 -27.62909 -26.61183 -24.66198 -23.42488 -23.12449 -21.07921 -20.87138 -18.29159 -17.70238 -17.49205 -15.96527 -15.75365 -15.62229 -15.47251 -15.07066 -14.66337 -14.48933 -14.45127 -14.16491 -13.98263 -13.49618 -13.33151 -12.86793 -12.65503 -12.54808 -12.37697 -12.28161 -12.07062 -11.98129 -11.63186 -11.51199 -10.97339 -10.85995 -10.56846 -10.53372 -10.30720 -9.25028 -8.66614 -8.54570 -6.24449 0.86608 1.50280 1.56678 1.60657 1.75398 2.57214 3.21334 3.23784 3.65785 3.76116 3.87320 4.03981 4.21275 4.27348 4.33892 4.38117 4.42125 4.47667 4.53580 4.69990 4.74564 4.78112 4.82668 4.91797 4.97115 5.01699 5.04865 5.15942 5.18594 5.26700 5.34661 5.42113 5.47808 5.65110 6.15784 6.19483 6.29953 6.65244 6.71115 7.53996 8.83639 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.006068 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.777937 B = 4613.514236 C = 5055.143341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.033 4.033 3 Si 1.103 2.897 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.581 4.581 8 H 0.045 0.955 9 C 0.016 3.984 10 H -0.006 1.006 11 C -0.098 4.098 12 C 0.080 3.920 13 N -0.678 5.678 14 C 0.113 3.887 15 H 0.021 0.979 16 C -0.077 4.077 17 C -0.118 4.118 18 C -0.065 4.065 19 S -0.310 6.310 20 C -0.064 4.064 21 C -0.114 4.114 22 C -0.087 4.087 23 H 0.257 0.743 24 H 0.041 0.959 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.075 0.925 28 H 0.343 0.657 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 -12.328 0.179 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.231 4.231 3 Si 0.926 3.074 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.619 4.619 8 H 0.063 0.937 9 C -0.003 4.003 10 H 0.012 0.988 11 C -0.137 4.137 12 C -0.049 4.049 13 N -0.311 5.311 14 C 0.003 3.997 15 H 0.039 0.961 16 C -0.096 4.096 17 C -0.158 4.158 18 C -0.213 4.213 19 S -0.085 6.085 20 C -0.212 4.212 21 C -0.153 4.153 22 C -0.125 4.125 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.164 0.836 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.119 -11.140 0.877 16.484 hybrid contribution -0.924 -0.524 -0.710 1.278 sum 11.194 -11.664 0.168 16.167 Atomic orbital electron populations 1.70892 1.07937 1.30156 1.49181 1.27012 0.96568 1.05985 0.93524 0.83110 0.74278 0.72382 0.77633 1.21384 1.19861 1.19971 1.22154 0.94243 0.92729 1.52760 0.93702 1.18962 0.94416 0.94271 0.92625 0.98803 1.21517 0.96525 0.97270 0.98362 1.21597 0.94233 0.92848 0.96217 1.60413 1.24685 1.41393 1.04643 1.21206 0.94124 0.94795 0.89591 0.96111 1.21075 0.95512 0.98537 0.94506 1.21790 1.00812 0.97517 0.95651 1.23406 0.96037 1.00949 1.00887 1.86867 1.20327 1.88339 1.12945 1.23421 1.03462 1.00501 0.93778 1.21748 0.96144 0.97452 0.99953 1.21486 0.96216 0.97105 0.97649 0.93236 0.94009 0.95666 0.96607 0.90677 0.83610 0.90477 0.91752 0.90709 0.89017 0.87062 0.88916 0.86457 0.89489 0.91703 0.92980 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.56 21.45 0.29 -57.26 16 2 C -0.03 -1.88 5.45 84.65 0.46 -1.41 16 3 Si 1.10 50.20 29.91 68.60 2.05 52.25 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.58 -31.28 6.87 25.60 0.18 -31.10 16 8 H 0.04 2.40 6.21 -2.91 -0.02 2.38 16 9 C 0.02 0.79 2.24 -11.46 -0.03 0.77 16 10 H -0.01 -0.35 6.96 -2.39 -0.02 -0.37 16 11 C -0.10 -4.42 5.49 30.65 0.17 -4.25 16 12 C 0.08 3.06 6.34 86.33 0.55 3.61 16 13 N -0.68 -21.94 6.49 -491.67 -3.19 -25.13 16 14 C 0.11 3.83 1.87 44.94 0.08 3.92 16 15 H 0.02 0.84 6.42 -2.38 -0.02 0.82 16 16 C -0.08 -2.00 1.71 -11.07 -0.02 -2.02 16 17 C -0.12 -3.01 4.94 30.49 0.15 -2.86 16 18 C -0.06 -1.37 6.46 72.02 0.47 -0.90 16 19 S -0.31 -6.91 22.33 -56.49 -1.26 -8.17 16 20 C -0.06 -1.17 6.45 72.01 0.46 -0.71 16 21 C -0.11 -2.43 4.96 30.49 0.15 -2.28 16 22 C -0.09 -3.49 4.49 30.64 0.14 -3.35 16 23 H 0.26 15.89 6.46 -92.71 -0.60 15.30 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.02 1.24 7.79 -2.38 -0.02 1.22 16 26 H 0.02 0.67 7.31 -2.39 -0.02 0.66 16 27 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 28 H 0.34 9.12 6.52 -89.69 -0.59 8.53 16 29 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.07 2.07 5.86 -2.39 -0.01 2.06 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.68 5.97 -2.38 -0.01 1.67 16 37 H 0.06 1.52 8.06 -2.39 -0.02 1.50 16 38 H 0.05 2.10 6.21 -2.38 -0.01 2.09 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -61.94 297.78 1.27 -60.67 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.61 Total: 18.22 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 2.76 Total: -40.59 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.90 Total: -82.38 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Atomic # 16 Polarization: -6.91 SS G_CDS: -1.26 Total: -8.17 kcal Total: -61.94 1.27 -60.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750354.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.208 kcal (2) G-P(sol) polarization free energy of solvation -61.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds