Wall clock time and date at job start Mon Mar 30 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48505 * 109.46617 * 269.99759 * 3 2 1 5 5 H 1.48506 * 109.46803 * 29.99555 * 3 2 1 6 6 H 1.48498 * 109.47239 * 149.99888 * 3 2 1 7 7 C 1.37875 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99939 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.52452 * 60.00017 * 9 7 2 11 11 C 1.53119 * 109.57327 * 299.83957 * 9 7 2 12 12 C 1.53038 * 109.27882 * 297.72211 * 11 9 7 13 13 N 1.46852 * 109.51870 * 300.81814 * 12 11 9 14 14 C 1.46845 * 111.19842 * 61.74428 * 13 12 11 15 15 H 1.08999 * 109.45709 * 58.27127 * 14 13 12 16 16 C 1.52997 * 109.45877 * 178.23862 * 14 13 12 17 17 C 1.52582 * 109.22700 * 61.29281 * 16 14 13 18 18 C 1.53094 * 109.95429 * 169.00014 * 17 16 14 19 19 S 1.81752 * 108.84203 * 63.02441 * 18 17 16 20 20 C 1.81740 * 102.22019 * 306.73138 * 19 18 17 21 21 C 1.52584 * 109.23044 * 300.05201 * 16 14 13 22 22 C 1.53032 * 109.52093 * 298.25529 * 14 13 12 23 23 H 0.97004 * 119.99927 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.50343 * 57.66022 * 11 9 7 25 25 H 1.08998 * 109.50427 * 177.77856 * 11 9 7 26 26 H 1.09000 * 109.46419 * 180.80819 * 12 11 9 27 27 H 1.08994 * 109.45868 * 60.83010 * 12 11 9 28 28 H 1.00900 * 110.99344 * 185.84392 * 13 12 11 29 29 H 1.09000 * 109.21717 * 180.64977 * 16 14 13 30 30 H 1.08999 * 109.38565 * 289.14641 * 17 16 14 31 31 H 1.08994 * 109.39247 * 48.85199 * 17 16 14 32 32 H 1.09001 * 109.57976 * 303.21362 * 18 17 16 33 33 H 1.09002 * 109.57561 * 182.83026 * 18 17 16 34 34 H 1.08993 * 109.57975 * 293.45858 * 20 19 18 35 35 H 1.09005 * 109.68507 * 173.13481 * 20 19 18 36 36 H 1.09004 * 109.38899 * 311.14899 * 21 16 14 37 37 H 1.09000 * 109.38586 * 70.84728 * 21 16 14 38 38 H 1.08998 * 109.50785 * 299.23475 * 22 14 13 39 39 H 1.09007 * 109.53251 * 179.13847 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8754 -0.6802 0.8908 11 6 4.0249 -0.4765 -1.2503 12 6 3.5615 -1.2371 -2.4948 13 7 4.0773 -2.6113 -2.4504 14 6 3.5599 -3.3352 -1.2822 15 1 2.4704 -3.3470 -1.3157 16 6 4.0858 -4.7718 -1.2988 17 6 5.6095 -4.7500 -1.2201 18 6 6.1395 -6.1626 -0.9607 19 16 5.6935 -7.2244 -2.3667 20 6 3.8988 -6.9655 -2.4901 21 6 3.6210 -5.4625 -2.5774 22 6 4.0232 -2.6372 -0.0016 23 1 -0.4850 0.8401 -0.0004 24 1 3.6290 0.5388 -1.2759 25 1 5.1142 -0.4425 -1.2291 26 1 3.9375 -0.7368 -3.3872 27 1 2.4721 -1.2588 -2.5224 28 1 3.8655 -3.1047 -3.3046 29 1 3.6902 -5.3087 -0.4366 30 1 6.0151 -4.3785 -2.1611 31 1 5.9206 -4.0921 -0.4087 32 1 5.6934 -6.5583 -0.0482 33 1 7.2241 -6.1322 -0.8556 34 1 3.4089 -7.3768 -1.6077 35 1 3.5171 -7.4599 -3.3835 36 1 2.5512 -5.2993 -2.7085 37 1 4.1565 -5.0444 -3.4298 38 1 5.1124 -2.6372 0.0393 39 1 3.6265 -3.1656 0.8654 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259750361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:57 Heat of formation + Delta-G solvation = -16.769433 kcal Electronic energy + Delta-G solvation = -18091.583046 eV Core-core repulsion = 15545.131200 eV Total energy + Delta-G solvation = -2546.451845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10216 -36.13789 -32.81145 -31.61064 -30.91350 -30.40646 -26.30168 -25.27269 -23.00079 -22.33937 -21.82366 -19.68151 -18.47884 -16.79498 -16.11818 -15.99938 -14.72662 -14.64357 -14.31745 -14.05576 -13.77532 -13.33798 -13.05041 -12.89473 -12.69149 -12.50745 -12.27278 -11.98775 -11.79708 -11.35341 -11.22312 -10.83848 -10.62589 -10.54027 -10.16991 -9.94219 -9.80546 -9.57663 -9.39698 -9.07398 -8.95879 -8.55684 -7.68632 -7.66334 -6.09285 -4.06944 1.81678 2.55628 3.24811 3.36601 3.38493 4.39472 4.71376 4.77628 4.85757 4.93633 5.08830 5.23583 5.25917 5.33897 5.52937 5.68167 5.74823 5.82144 5.91504 5.96167 6.08333 6.10673 6.18169 6.23398 6.27926 6.47527 6.53117 6.57358 6.68329 6.84821 6.95144 7.01004 7.14749 7.37008 7.75576 7.79827 8.04855 8.50360 8.93578 9.54369 11.03737 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.005635 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.878108 B = 4967.785871 C = 5105.287470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.006 3.994 10 H 0.025 0.975 11 C -0.114 4.114 12 C 0.070 3.930 13 N -0.682 5.682 14 C 0.103 3.897 15 H 0.053 0.947 16 C -0.089 4.089 17 C -0.109 4.109 18 C -0.078 4.078 19 S -0.286 6.286 20 C -0.074 4.074 21 C -0.120 4.120 22 C -0.089 4.089 23 H 0.262 0.738 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.327 0.673 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.584 -10.231 -4.377 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.544 4.544 8 H 0.089 0.911 9 C -0.013 4.013 10 H 0.043 0.957 11 C -0.151 4.151 12 C -0.059 4.059 13 N -0.314 5.314 14 C -0.006 4.006 15 H 0.071 0.929 16 C -0.108 4.108 17 C -0.147 4.147 18 C -0.226 4.226 19 S -0.060 6.060 20 C -0.223 4.223 21 C -0.159 4.159 22 C -0.127 4.127 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.662 -10.599 -4.677 15.745 hybrid contribution -1.431 1.566 0.433 2.165 sum 9.231 -9.033 -4.244 13.595 Atomic orbital electron populations 1.69902 1.06277 1.26832 1.51172 1.25014 0.94629 0.98994 0.94614 0.86858 0.79905 0.83725 0.77801 1.20670 1.22698 1.19172 1.21022 0.88859 0.94122 1.50417 0.91062 1.19232 0.96784 0.92119 0.93123 0.95669 1.21842 0.98172 0.98024 0.97109 1.21731 0.98628 0.88401 0.97109 1.60427 1.63192 1.03211 1.04568 1.21397 0.97465 0.90032 0.91748 0.92931 1.21228 0.95676 0.96781 0.97132 1.21735 0.95230 0.93576 1.04179 1.23536 1.04101 0.97771 0.97172 1.86691 1.10598 1.62784 1.45964 1.23409 0.93386 1.00118 1.05356 1.21800 1.01978 0.92648 0.99428 1.21496 0.98493 0.97478 0.95250 0.92789 0.93676 0.93909 0.93155 0.93411 0.85611 0.91390 0.89899 0.90113 0.90297 0.88305 0.90129 0.88255 0.90980 0.90302 0.93261 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 21.79 24.40 -169.99 -4.15 17.64 16 4 H -0.28 -6.70 6.85 56.52 0.39 -6.32 16 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 7 C -0.51 -13.54 7.32 -34.44 -0.25 -13.79 16 8 H 0.07 2.07 7.12 -52.49 -0.37 1.70 16 9 C 0.01 0.14 2.19 -91.65 -0.20 -0.06 16 10 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 11 C -0.11 -2.42 5.10 -26.65 -0.14 -2.55 16 12 C 0.07 1.36 6.34 -3.83 -0.02 1.34 16 13 N -0.68 -11.36 5.97 -106.76 -0.64 -11.99 16 14 C 0.10 1.77 1.99 -67.73 -0.13 1.63 16 15 H 0.05 1.07 6.79 -51.93 -0.35 0.72 16 16 C -0.09 -1.21 1.81 -91.05 -0.17 -1.38 16 17 C -0.11 -1.37 4.64 -26.90 -0.12 -1.50 16 18 C -0.08 -0.87 6.45 37.21 0.24 -0.63 16 19 S -0.29 -3.46 22.33 -107.50 -2.40 -5.86 16 20 C -0.07 -0.82 6.45 37.21 0.24 -0.58 16 21 C -0.12 -1.44 4.41 -26.89 -0.12 -1.56 16 22 C -0.09 -1.70 4.49 -26.65 -0.12 -1.82 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.05 1.02 3.27 -51.92 -0.17 0.85 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 1.06 7.31 -51.93 -0.38 0.68 16 28 H 0.33 4.83 7.01 -39.29 -0.28 4.55 16 29 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 31 H 0.08 1.07 5.80 -51.93 -0.30 0.77 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.08 0.96 6.99 -51.93 -0.36 0.59 16 38 H 0.05 0.86 6.12 -51.93 -0.32 0.54 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -28.41 290.75 -9.22 -37.63 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.30 Total: 3.60 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -0.89 Total: -19.07 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.14 Total: -38.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.15 Total: 17.64 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.40 Total: -5.86 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.41 -9.22 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.864 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds